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Identification of Proteins and Genes Associated with Hedgehog Signaling Pathway Involved in Neoplasm Formation Using Text-Mining Approach

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Big Data Mining and Analytics 2024年第1期7卷 107-130页

作者： Nadezhda yu.Biziukova sergey M.Ivanov Oga A.Tarasova Department of Bioinformatics Institute of Biomedical ChemistryMoscow 119121Russia Department of Bioinformatics Pirogov Russian National Research Medical UniversityMoscow 117997Russia

Analysis of molecular mechanisms that lead to the development of various types of tumors is essential for biology and medicine,because it may help to find new therapeutic opportunities for cancer treatment and cure including personalized treatment *** of the pathways known to be important for the development of neoplastic diseases and pathological processes is the Hedgehog signaling pathway that normally controls human embryonic *** accumulation of various types of biological data,including interactions between proteins,regulation of genes transcription,proteomics,and metabolomics experiments results,allows the application of computational analysis of these big data for identification of key molecular mechanisms of certain diseases and pathologies and promising therapeutic *** aim of this study is to develop a computational approach for revealing associations between human proteins and genes interacting with the Hedgehog pathway components,as well as for identifying their roles in the development of various types of *** automatically collect sets of abstract texts from the NCBI PubMed bibliographic *** recognition of the Hedgehog pathway proteins and genes and neoplastic diseases we use a dictionary-based named entity recognition approach,while for all other proteins and genes machine learning method is *** association extraction,we develop a set of semantic *** complete the results of the text analysis with the gene set enrichment *** identified key pathways that may influence the Hedgehog pathway and their roles in tumor development are then verified using the information in the literature.

关键词： text-mining data mining Hedgehog pathway neoplastic processes enrichment analysis pathology molecularmechanisms

Reactivation of hepatitis B virus infection – an important aspect of multifaceted problem

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World Journal of Gastroenterology 2024年第26期30卷 3193-3197页

作者： sergey Morozov sergey Batskikh Department of Gastroenterology Hepatology and NutritionFederal Research Center of NutritionBiotechnology and Food SafetyMoscow 115446Russia Department of Hepatology Moscow Clinical Scientific Center N.A.A.S.LoginovMoscow 111123Russia

In this editorial we comment on the article published in the recent issue of the W orld Journal of *** focus specifically on the problem of occult hepatitis B virus(HBV)infection,that is a result of previous hepatitis B(PHB)and a source for reactivation of *** prevalence of PHB is underestimated due to the lack of population testing ***,this condition not only com-plicate anticancer treatment,but may be responsible for the development of other diseases,like cancer or autoimmune *** we unveil possible mecha-nisms responsible for realization of these processes and suggest practical approa-ches for diagnosis and treatment.

关键词： Occult hepatitis B virus infection Hepatitis B virus reactivation Previous hepatitis B Cancer Autoimmune disorders

Radiation of a TM mode from an open end of a three-layer dielectric capillary

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Chinese Physics B 2024年第7期33卷 311-318页

作者： sergey NGalyamin Alexandr MAltmark St.Petersburg State University 7/9Universitetskayanab.St.Petersburg 199034Russia St.Petersburg Electrotechnical University“LETI” 5ProfessoraPopovaSt.Petersburg 197022Russia

Modern trends in beam-driven radiation sources include the interaction of Cherenkov wakefields in open-ended circular waveguides with complicated dielectric linings, with a three-layer dielectric capillary recently proposed to reduce radiation divergence being a representative example [Opt. Lett. 45 5416(2020)]. We present a rigorous approach that allows for an analytical description of the electromagnetic processes that occur when the structure is excited by a single waveguide TM mode. In other words, the corresponding canonical waveguide diffraction problem is solved in a rigorous formulation. This is a continuation of our previous papers which considered simpler cases with a homogeneous or two-layer dielectric filling. Here we use the same analytical approach based on the Wiener–Hopf–Fock technique and deal with the more complicated case of a three-layer dielectric lining. Using the obtained rigorous solution, we discuss the possibility of manipulating the far-field radiation pattern using a third layer made of a low permittivity material.

关键词： diffraction radiation open-ended waveguide Wiener–Hopf technique Cherenkov radiation

A Note on Transition Kernels for the Most UnfavourableMixed Strategies of the Market

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Journal of the Operations Research Society of China 2024年第1期12卷 35-50页

作者： sergey N.Smirnov Faculty of Computational Mathematics and Cybernetics Lomonosov Moscow State UniversityMoscowRussian Federation 119991

We consider a deterministic model of market evolution with trading constraints andapply a game-theoretic approach to the superhedging *** obtain sufﬁcientconditions for the game equilibrium and prove under these conditions the existenceof a Borel-measurable transition kernel describing dependence on price prehistory ofthe most unfavourable mixed strategy of the market.

关键词： Superhedging Guaranteed deterministic approach Optimal mixedstrategies of the market Borel-measurable transition kernel Game equilibrium

Structural Stability of the Financial Market Model: Continuity of Superhedging Price and Model Approximation

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Journal of the Operations Research Society of China 2024年第1期12卷 215-241页

作者： sergey N.Smirnov Faculty of Computational Mathematics and Cybernetics Lomonosov Moscow State UniversityMoscow119991Russian Federation

The present paper continues the topic of our recent paper in the same journal,aiming to show the role of structural stability in financial *** the context of financial market modeling,structural stability means that a specific“no-arbitrage”property is unaffected by small(with respect to the Pompeiu–Hausdorff metric)perturbations of the model’s *** formulate,based on our economic interpretation,a new requirement concerning“no arbitrage”properties,which we call the“uncertainty principle”.This principle in the case of no-trading constraints is equivalent to structural *** demonstrate that structural stability is essential for a correct model approximation(which is used in our numerical method for superhedging price computation).We also show that structural stability is important for the continuity of superhedging prices and discuss the sufficient conditions for this continuity.

关键词： Uncertainty Structural stability No arbitrage Continuity of superhedging price Compact-valued multifunction Financial market model approximation Trading constraints

Unveiling the early universe:Axion-like particles and their role in primordial structure formation

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Science China(Physics,Mechanics & Astronomy) 2024年第11期67卷 178-179页

作者： sergey G.Rubin National Research Nuclear University MEPhI(Moscow Engineering Physics Institute) Moscow 115409Russia

The groundbreaking discovery of gravitational waves(GWs)by the LIGO-VIRGO-KAGRO collaboration has revolutionized our understanding of the universe and opened up a new way of observing cosmic events. Unlike light waves... 详细信息

关键词： universe gravitational cosmic

Analysis of natural vibration of truncated conical shells partially filled with fluid

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International Journal of Mechanical System Dynamics 2024年第2期4卷 142-152页

作者： sergey A.Bochkarev sergey V.Lekomtsev Laboratory of Functional Materials Institute of Continuous Media MechanicsUral Branch of Russian Academy of SciencesPermRussian Federation

In this paper,we study the vibrational behavior of shells in the form of truncated cones containing an ideal compressible *** sloshing effect on the free surface of the fluid is *** dynamic behavior of the elastic structure is investigated based on the classical shell theory,the constitutive relations of which represent a system of ordinary differential equations written for new *** fluid vibrations are described in terms of acoustic approximation using the wave equation for hydrodynamic pressure written in spherical *** transformation into the system of ordinary differential equations is carried out by applying the generalized differential quadrature *** formulated boundary value problem is solved by Godunov's orthogonal sweep *** frequencies of shell vibrations are calculated using the stepwise procedure and the Muller *** accuracy and reliability of the obtained results are estimated by making a comparison with the known numerical and analytical *** dependencies of the lowest frequency on the fluid level and cone angle of shells under different combinations of boundary conditions(simply supported,rigidly clamped,and cantilevered shells)have been studied *** conical straight and inverted shells,a numerical analysis has been performed to estimate the possibility of finding configurations at which the lowest natural frequencies exceed the corresponding values of the equivalent cylindrical shell.

关键词： classical shell theory conical shell Godunov's orthogonal sweep method ideal compressible fluid generalized differential quadrature method natural vibrations

Relationship between mitochondrial respiratory dysfunction of blood mononuclear cells and heart failure severity

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Journal of Geriatric Cardiology 2024年第1期21卷 130-134页

作者： Viacheslav A.Korepanov Tariel A.Atabekov Tatiana yu.Rebrova Roman E.Batalov sergey A.Afanasiev Cardiology Research Institute Tomsk National Research Medical CenterRussian Academy of SciencesTomskRussia

Chronic heart failure(CHF)is a clinical syndrome manifested by reduced pumping ability of the heart,increased pressure in heart chambers in both physical activity and at *** symptoms of this syndrome are dyspnea,undue fatigability,peripheral edema,which follow structural and functional changes of the myocardium.[1]The growing incidence of CHF,especially among elderly people,is an urgent problem for medicine in the vast majority of industrialized *** instance,in Russian Federation,CHF is diagnosed in about 7%of cardiovascular *** the same time,this indicator varies from 0.3%in young people(20-29 years old)to 70%in the older age group.[2,3].

关键词： severity instance pumping

A Review on Characteristics, Extraction Methods and Applications of Renewable Insect Protein

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Journal of Renewable Materials 2024年第5期12卷 923-950页

作者： Adelya Khayrova sergey Lopatin Valery Varlamov Research Centre of Biotechnology of the Russian Academy of Sciences Moscow119071Russia

Due to the expected rise in the world population,an increase in the requirements for quality and safety of food and feed is expected,which leads to the growing demand for new sources of sustainable and renewable *** protein is gaining importance as a renewable material for several reasons,reﬂecting its potential contribu-tions to sustainability,resource efﬁciency,and environmental *** insect species are known to be able to efﬁciently convert organic waste into high-value products such as protein,requiring less land and water compared to traditional *** addition,insect farming produces fewer greenhouse gas emissions,contri-buting to mitigating climate *** are considered as a major potential alternative to animal or plant protein due to their many nutritional beneﬁts,including high protein,mineral,and vitamin *** average,the protein content of insects ranges between 35%and 60%dry weight,which exceeds plant protein sources,such as cereal,soybeans,and *** the acceptance of insect protein grows and technologies advance,the food and feed industries continue to explore and expand their applications,offering consumers diverse and sustainable pro-tein *** this review,we discuss the recentﬁndings relating to insect protein focusing on its characteristics,extraction methods,applications,and opportunities along with some trade-offs and uncertainties.

关键词： Circular economy waste utilisation protein insect Hermetia illucens