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Phyton-International Journal of Experimental Botany 2020年第3期89卷 743-764页

作者： Thatsanee Luangharn Samantha C.Karunarathna Peter E.Mortimer Kevin D.Hyde Jianchu Xu Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming650201China University of chinese Academy of Sciences Beijing100049China East and central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming650201China centre for Mountain Futures Kunming Institute of BotanyKunming650201China center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai57100Thailand

Ganoderma is a genus of medicinally and economically important mushrooms in the family Ganodermataceae.Ganoderma species are popular medicinal mushrooms and their health benefits are well-documented.Ganoderma is a cosmopolitan genus that is widely distributed in both tropical and temperate regions.This genus is characterized by its unique laccate or non-laccate species with double-walled basidiospores.Here,we report on eight collections of G.gibbosum collected during surveys in Kunming,Yunnan Province,china.The specimens are described and illustrated based on macro-and micro-morphological characteristics.Total DNA of the eight G.gibbosum strains were extracted using the Biospin Fungal Extraction Kit following manufacturer protocol.Amplification of the Internal Transcribed Spacer(nrITS)region was carried out using ITS5/ITS4 primers and LROR/LR5 for the nuclear ribosomal large subunit 28S rDNA gene(LSU).Phylogenetic analysis with closely related species to G.gibbosum showed that all eight collections grouped with G.gibbosum with 100%bootstrap support.Phylogenetic similarity and morphological variations within the eight collections of G.gibbosum are discussed.

关键词： chinese medicine medicinal mushroom morphology phylogeny

Multi-Gene Phylogeny and Taxonomy of the Wood-Rotting Fungal Genus Phlebia sensu lato(Polyporales,Basidiomycota)

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Multi-Gene Phylogeny and Taxonomy of the Wood-Rotting Fungal...

Morphology and multigene phylogeny revealed Peroneutypa aquilariae sp.nov.(Diatrypaceae,Xylariales)from Aquilaria sinensis in Yunnan Province,china

中国菌物学会2023年学术年会

作者： chang-Lin Zhao Meng-Han Qu Ruo-Xia Huang Samantha C.Karunarathna

Phlebia s.l.(Polyporales,Basidiomycota) accommodates numerous species of wood-inhabiting fungi within the phylum Basidiomycota.The present study employs the morphological and phylogenetic approaches to revise the generic and species classification of Phlebia s.***.and surveys the species diversity.The phylogenetic analyses were performed using multiple gene regions viz.the internal transcribed spacer(ITS),the large subunit nuclear ribosomal RNA gene(nLSU),the translation elongation factor 1-α(tef1),the small subunit of mitochondrial rRNA gene(mtSSU),the glyceraldehyde 3-phosphate dehydrogenase(GAPDH),RNA polymerase II largest subunit(rpb1),and RNA polymerase II second largest subunit(rpb2).We overall recognize twenty genera of Phlebia s.l.,including three new genera viz.ceriporiopsoides,Phlebicolorata,and Pseudophlebia,seven new species viz.crustodontia rhododendri,Hydnophlebia fissurata,Luteoporia straminea,Merulius sinensis,Mycoaciella brunneospina,Phlebia niveomarginata,and P.poroides,and seventeen new combinations viz.ceriporiopsoides guidella,c.lagerheimii,Hydnophlebia acanthocystis,H.capsica,H.fimbriata,Merulius fuscotuberculatus,M.nantahaliensis,M.tomentopileatus,Mycoacia tuberculata,Mycoaciella uda,Phlebicolorata alboaurantia,Ph.brevispora,Ph.pseudoplacenta,Ph.rosea,Pseudophlebia lindtneri,Ps.semisupina,and Ps.setulosa.Descriptions,illustrations,phylogenetic trees to show the placements,and notes of new taxa are provided.

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Studies in Fungi 2022年第1期7卷 128-138页

作者： Tian-Ye Du Samantha C.Karunarathna Xian Zhang Dong-Qin Dai Ying Gao Ausana Mapook Saowaluck Tibpromma center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanChina center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand

Dead twigs of Aquilaria sinensis(Thymelaeaceae)with fungal fruiting bodies were collected from Xishuangbanna,Yunnan Province,china.After initial morphological observations,an interesting fungus whose morphologically resembled Peroneutypa was isolated.Molecular phylogeny of combined ITS and tub2 showed our fungal collection is phylogenetically closely related to P.mackenziei.However,in morphology,our fungal collection is distinct from P.mackenziei in having an ostiolar canal without periphyses and the absence of paraphyses.Based on unique morphological characteristics and multigene phylogenetic analyses results,our fungal isolate is described in this paper as Peroneutypa aquilariae sp.nov.In addition,this is the first report of the genus Peroneutypa from the host A.sinensis.Full description,illustrations,and a phylogenetic tree to show the placement of the new species are provided.A synoptic table of morphological characteristics in Peroneutypa reported worldwide is also provided.

关键词： sp.nov illustration Aquilaria

Evolution of non‑lichenized,saprotrophic species of Arthonia(Ascomycota,Arthoniales)and resurrection of Naevia,with notes on Mycoporum

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Fungal Diversity 2020年第3期102卷 205-224页

作者： Vinodhini Thiyagaraja Robert Lücking Damien Ertz Dhanushka N.Wanasinghe Samantha C.Karunarathna Erio camporesi Kevin D.Hyde cAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50002Thailand World Agro Forestry centre East and central Asia Kunming 650201YunnanPeople’s Republic of China Botanischer Garten und Botanisches Museum Freie Universitat BerlinKonigin‑Luise‑Str.6-814195 BerlinGermany Research Department Meise Botanic GardenNieuwelaan 381860 MeiseBelgium Service Général de l’Enseignement Supérieur et de la Recherche Scientifique Fédération Wallonie-BruxellesRue A.Lavallée 11080 BrusselsBelgium A.M.B.G.Gruppo Micologico Forlivese“Antonio cicognani” Via Roma 18ForliItaly A.M.B Circolo Micologico“Giovanni carini”C.P.314BresciaItaly Societa per gli Studi Naturalistici della Romagna C.P.144BagnacavalloRAItaly

Fungi that are barely lichenized or non-lichenized and closely related to lichenized taxa,the so-called borderline fungi,are an important element in reconstructing the evolutionary history of lichenized lineages.Arthoniaceae is a prime example including non-lichenized,saprotrophic lineages which potentially were precursors to lichenized taxa.In this study,we focused on saprotrophic species of Arthonia sensu lato,including new sequence data for Arthonia pinastri.We obtained fresh material of this taxon from a living branch of Fraxinus ornus in Italy to assess its taxonomic status and to elucidate its phylogenetic relationships within Arthonia.Thin sections of the thallus and ascomata of A.pinastri confirmed the absence of a photobiont.Maximum likelihood and Bayesian analyses of combined mtSSU,nuLSU and RPB2 sequence data placed the species close to A.dispersa(barely lichenized or non-lichenized)and A.punctiformis(non-lichenized)in a clade closely related to Arthonia sensu stricto,and the A.pinastri clade is here resurrected under the name Naevia.Ancestral character state analysis within a broader context of Arthoniales does not support the saprotrophic lifestyle to be a plesiomorphic feature,but suggests loss of lichenization in Naevia,as well as loss and possible regain in a second clade containing saprotrophic species and including taxa resembling Mycoporum,underlining the evolutionary plasticity of Arthoniales.These two clades constitute model taxa to further investigate the evolution of alternative biological lifestyles within the context of chiefly lichenized taxa.

关键词： Arthonia susa Arthothelium Evolution Lichenization Mycarthonia Pseudoarthonia Saprobes

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Book reviews

Fungal Diversity 2012年第3期54卷 147-154页

作者： Samantha C.Karunarathna Indunil Senanayake Shova Baral Kasun M.Thambugala Benjarong Thongbai Kevin D.Hyde Mae Fah Luang University 333 Moo 1ThasudMuangChiang Rai 57100Thailand

marine mycology through comprehensive reviews of various aspects of marine fungi.In the last few years,the diversity,ecological role and biotechnological applications of marine fungi have been addressed in numerous scientific publications,but they are scattered in different journals.This book combines and reviews the data from these publications,and is written by reputed marine mycologists.The book comprises 15 chapters which are supported by detailed illustrations,photographs and diagrams,and guides the lay person in understanding the latest information on topics including molecular taxonomy and phylogeny,ecology of fungi in different marine habitats such as deep sea,corals and the Dead Sea,and fungi in extreme marine environments as well as their biotechnological applications.

关键词： illustration scattered extreme

Taxonomic circumscription of Diaporthales based on multigene phylogeny and morphology

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Fungal Diversity 2018年第6期93卷 241-443页

作者： Indunil c.Senanayake Rajesh Jeewon Putarak chomnunti Dhanushka N.Wanasinghe chada Norphanphoun Anuruddha karunarathna Dhandevi Pem Rekhani H.Perera Erio camporesi Eric H.c.McKenzie Kevin D.Hyde Samantha C.Karunarathna Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina World Agroforestry centre East and Central AsiaKunming 650201YunnanChina centre of Excellence for Fungal Research Mae Fah Luang UniversityChiang RaiThailand Department of Health Sciences Faculty of ScienceUniversity of MauritiusReduit 80837Mauritius Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand A.M.B.Gruppo Micologico Forlivese Antonio CicognaniVia Roma 18Forlı`Italy A.M.B.circolo Micologico Giovanni Carini314 BresciaItaly Societa`per gliStudiNaturalisticidella Romagna 144 BagnacavalloRAItaly Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand

Demarcation of family,genus and species boundaries in the Diaporthales has been tentative due to uninformative illus-trations and descriptions,overlapping morphological characteristics,misplacement or poor condition of type specimens and shortage of molecular data from ex-type cultures.In this study,we obtained the type specimens or other authentic specimens of diaporthalean taxa from worldwide fungaria.We examined,described and illustrated them.This study is based on morphological characters from type or authentic specimens,details from protologue and original illustrations and molecular data obtained from GenBank.combined analyses of nrITS,nrLSU,RPB2 and TEF1-a sequence data were used to construct the molecular phylogeny.Additionally,we provided separate phylogenetic trees for families when necessary to show the generic distribution within these families based on suitable gene markers.Based on morphology and phylogeny,we treat 17 genera previously assigned to Diaporthales genera incertae sedis within several families.For some genera we have designated new generic types as they are lacking type species or type species have affiliations with other families.We exclude Anisomycopsis from Diaporthales and place it in Xylariomycetidae genera incertae sedis.Tirisporellaceae,which was previously placed in Tirisporellales is placed in Diaporthales based on phylogeny and morphology.A new combi-nation,Dendrostoma leiphaemia propose for Amphiporthe leiphaemia(Fr.)Butin.Based on the morphological characters and molecular data we accept 27 families and 138 genera within Diaporthales,24 genera in Diaporthales genera incertae sedis and one genus in Xylariomycetidae genera incertae sedis.We provide notes for genera in Diaporthales genera incertae sedis,and excluded and doubtful genera are listed with notes on their taxonomy and phylogeny.

关键词： Authentic specimens Dendrostoma leiphaemia Incertae sedis classification Taxonomy Families Accepted genera

Prized edible Asian mushrooms: ecology, conservation and sustainability

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Fungal Diversity 2012年第5期56卷 31-47页

作者： Peter E.Mortimer Samantha C.Karunarathna Qiaohong Li Heng Gui Xueqing Yang Xuefei Yang Jun He Lei Ye Jiayu Guo Huili Li Phongeun Sysouphanthong Dequn Zhou Jianchu Xu Kevin D.Hyde Key Laboratory of Biodiversity and Biogeography Kunming Institute of BotanyChinese Academy of SciencesKunming 650201China World Agroforestry centre East Asia132 Lanhei RoadKunming 650201China Institute of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand centre for Mountain Ecosystem Studies Kunming Institute of BotanyChinese Academy of Sciences650201KunmingChina Faculty of Environmental Science and Engineering Kunming University of Science and Technology68 Wenchang RoadYieryi StreetYunnan Province Kunming 650093China

Mushrooms can be found in forests worldwide and have long been exploited as resources in developed economies because of their important agro-industrial,medicinal and commercial uses.For less developed countries,such as those within the Greater Mekong Subregion,wild harvesting and mushroom cultivation provides a much-needed alternative source of income for rural households.However,this has led to over-harvesting and ultimately environmental degradation in certain areas,thus management guidelines allowing for a more sustained approach to the use of wild mushrooms is required.This article addresses a selection of the most popular and highly sought after edible mushrooms from Greater Mekong Subregion:Astraeus hygrometricus,Boletus edulis,Morchella conica,Ophiocordyceps sinensis,Phlebopus portentosus,Pleurotus giganteus,Termitomyces eurhizus,Thelephora ganbajun,Tricholoma matsuake,and Tuber indicum in terms of value,ecology and conservation.The greatest threat to these and many other mushroom species is that of habitat loss and over-harvesting of wild stocks,thus,by creating awareness of these issues we wish to enable a more sustainable use of these natural products.Thus our paper provides baseline data for these fungi so that future monitoring can establish the effects of continued harvesting on mushroom populations and the related host species.

关键词： Mushroom species Greater Mekong Sub-region Medicinal foods Non-timber forest products

Taxonomy and phylogeny of bioluminescent mushrooms in Yunnan Province,P.R.china

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Taxonomy and phylogeny of bioluminescent mushrooms in Yunnan...

The numbers of fungi:contributions from traditional taxonomic studies and challenges of metabarcoding

中国菌物学会2023年学术年会

作者： Wenhua Lu Saowaluck Tibpromma Shicheng Shao Samantha C.Karunarathna center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal University cAS Key Laboratory of Tropical Forest Ecology Xishuangbanna Tropical Botanical GardenChinese Academy of Sciences

Bioluminescent fungi are one of the wonderful creations of nature.Studies on bioluminescent fungi have gained attention due to their application in medical research,agricultural fields,environmental biosensors,biochemistry,photochemistry,evolution,and taxonomic research.Out of 155,000 species of described fungi worldwide,about 113 are known to be bioluminescent or capable of emitting light.As a part of the work on bioluminescent fungi in Asia,we discovered three bioluminescent mushrooms over the last three years viz.Roridomyces phyllostachydis from northeast India;Roridomyces viridiluminus and Favolaschia xtbgensis from Yunnan Province of china.Out of 133,only twenty-six bioluminescent fungi have been reported from china,which is surprisingly a low number compared to the high fungal diversity in Yunnan Province,mainly due to a lack of comprehensive studies.Within this context,we plan to survey the key forest systems in Yunnan,collect bioluminescent mushrooms,and describe them based on the latest morphological and phylogenetic methods.In addition,the collected bioluminescent mushrooms observed for bioluminescence will be isolated into cultures.This study will help biochemists,ecologists,microbiologists,and molecular biologists who try to understand the mechanism behind fungal bioluminescence.

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Fungal Diversity 2022年第3期114卷 327-386页

作者： chayanard Phukhamsakda Rolf Henrik Nilsson chitrabhanu S.Bhunjun Antonio Roberto Gomes de Farias Ya-Ru Sun Subodini N.Wijesinghe Mubashar Raza Dan-Feng Bao Li Lu Saowaluck Tibpromma Wei Dong Danushka S.Tennakoon Xing-Guo Tian Yin-Ru Xiong Samantha C.Karunarathna Lei cai Zong-Long Luo Yong Wang Ishara S.Manawasinghe Erio camporesi Paul M.Kirk Itthayakorn Promputtha chang-Hsin Kuo Hong-Yan Su Mingkwan Doilom Yu Li Yong-Ping Fu Kevin D.Hyde Engineering Research center of chinese Ministry of Education for Edible and Medicinal Fungi Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China college of Plant Protection Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Gothenburg Global Biodiversity centre 40530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgBox 46140530 GothenburgSweden center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025GuizhouPeople’s Republic of China State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of China college of Agriculture and Biological Sciences Dali UniversityDali 671003YunnanPeople’s Republic of China Department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand centre for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanPeople’s Republic of China Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Department of Plant Medicine National Chiayi University300 Syuefu RoadChiayi City 60004Taiwan School of Food and Pharmaceutical Engineering Guizhou Institute of TechnologyGuiyang 550003People’s Republic of China cAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForlìItaly A.M.B Circolo Micologico“Giovanni Carini”C.P.314 BresciaItaly

The global diversity of fungi has been estimated using several different approaches.There is somewhere between 2–11 million estimated species,but the number of formally described taxa is around 150,000,a tiny fraction of the total.In this paper,we examine 12 ascomycete genera as case studies to establish trends in fungal species descriptions,and introduce new species in each genus.To highlight the importance of traditional morpho-molecular methods in publishing new species,we introduce novel taxa in 12 genera that are considered to have low species discovery.We discuss whether the species are likely to be rare or due to a lack of extensive sampling and classification.The genera are Apiospora,Bambusicola,Beltrania,capronia,Distoseptispora,Endocalyx,Neocatenulostroma,Neodeightonia,Paraconiothyrium,Peroneutypa,Phaeoacremonium and Vanakripa.We discuss host-specificity in selected genera and compare the number of species epithets in each genus with the number of ITS(barcode)sequences deposited in GenBank and UNITE.We furthermore discuss the relationship between the divergence times of these genera with those of their hosts.We hypothesize whether there might be more species in these genera and discuss hosts and habitats that should be investigated for novel species discovery.

关键词： 12 new taxa Ascomycota Fungal diversity Fungal numbers High-throughput sequencing Host-specificity

Taxonomy and phylogeny of hyaline‑spored coelomycetes

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Fungal Diversity 2020年第1期100卷 279-801页

作者： Wen‑Jing Li Eric H.c.McKenzie Jian‑Kui(Jack)Liu D.Jayarama Bhat Dong‑Qin Dai Erio camporesi Qing Tian Sajeewa S.N.Maharachchikumbura Zong‑Long Luo Qiu‑Ju Shang Jin‑Feng Zhang Narumon Tangthirasunun Samantha C.Karunarathna Jian‑chu Xu Kevin D.Hyde Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China World Agroforestry centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Landcare Research Manaaki Whenua Private Bag 92170AucklandNew Zealand School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China No.128/1‑J Azad Cooperative Housing SocietyCurcaP.O.Goa VelhaGoa 403108India center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujingYunnan 655011People’s Republic of China A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForlìItaly A.M.B circolo Micologico“Giovanni carini” C.P.314BresciaItaly Societàper gli Studi Naturalistici della Romagna C.P.143BagnacavalloRAItaly college of Agriculture and Biological Sciences Dali UniversityDali 671003YunnanPeople’s Republic of China Department of Biology Faculty of ScienceKing Mongkut’s Institute of TechnologyLadkrabangChalongkrung Rd.Ladkrabang DistrictBangkok 10520Thailand

coelomycete is a general term used for asexual fungi which produce conidia in fruiting bodies:pycnidial,acervular,cupulate,pycnothyria or stromatic conidiomata.The group contains numerous plant pathogenic,saprobic and endophytic species associated with a wide range of hosts.Traditionally,morphological characters and host associations have been used as criteria to identify and classify coelomycetes,and this has resulted in a poor understanding of their generic and species boundaries.DNA based taxonomic studies have provided a better outlook of the phylogenetic and evolutionary trends in coelomycetes.However,the present outcomes represent only a preliminary step towards the understanding of coelomycetes.Many genera have not been revisited since they were first described.The present study revises the classification of the hyaline-spored coelomycetes and provides a modern taxonomic framework based on both morphology and phylogeny.In total,248 genera were investigated,of which less than 100 are known to have sequence data.Multi-locus sequence data analyses of 28S nrDNA,18S nrDNA,ITS,RNA polymerase II second largest subunit(rpb2),and part of the translation elongation factor 1-alpha gene(tef1)andβ-tubulin(tub2)gene regions were analysed.As a result,three new genera and 23 new species are introduced.In addition,three new links between sexual and asexual genera are provided.There are 138 genera that lack sequence data,and these are treated as Ascomycota,genera incertae sedis.Line drawings and descriptions are provided based on the examination of types and fresh collections and on the literature.

关键词： 26 new taxa Ascomycota Asexual morphs Basidiomycota