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The Global Soil mycobiome consortium dataset for boosting fungal diversity research

Fungal Diversity 2021年第6期111卷 573-588页

作者： Leho Tedersoo Vladimir mikryukov Sten Anslan mohammad Bahram Abdul Nasir Khalid Adriana Corrales Ahto Agan Aída-m.Vasco-Palacios alessandro Saitta alexandre Antonelli Andrea C.Rinaldi Annemieke Verbeken Bobby P.Sulistyo Boris Tamgnoue Brendan Furneaux Camila Duarte Ritter Casper Nyamukondiwa Cathy Sharp César marín D.Q.Dai Daniyal Gohar Dipon Sharmah Elisabeth machteld Biersma Erin K.Cameron Eske De Crop Eveli Otsing Evgeny A.Davydov Felipe E.albornoz Francis Q.Brearley Franz Buegger Genevieve Gates Geoffrey Zahn Gregory Bonito Indrek Hiiesalu Inga Hiiesalu Irma Zettur Isabel C.Barrio Jaan Pärn Jacob Heilmann-Clausen Jelena Ankuda John Y.Kupagme Joosep Sarapuu Jose G.maciá-Vicente Joseph Djeugap Fovo József Geml Juha m.alatalo Julieta alvarez-manjarrez Jutamart monkai Kadri Põldmaa Kadri Runnel Kalev Adamson Kari A.Bråthen Karin Pritsch Kassim I.Tchan Kęstutis Armolaitis Kevin D.Hyde Kevin K.Newsham Kristel Panksep Lateef A.Adebola Louis J.Lamit malka Saba marcela Eda Silva Cáceres maria Tuomi marieka Gryzenhout marijn Bauters miklós Bálint Nalin Wijayawardene Niloufar Hagh-Doust Nourou S.Yorou Olavi Kurina Peter E.mortimer Peter meidl RHenrik Nilsson Rasmus Puusepp Rebeca Casique-Valdés Rein Drenkhan Roberto Garibay-Orijel Roberto Godoy saleh alfarraj saleh Rahimlou Sergei Põlme Sergey V.Dudov Sunil mundra Talaat Ahmed Tarquin Netherway Terry W.Henkel Tomas Roslin Vladimir E.Fedosov Vladimir G.Onipchenko WAErandi Yasanthika Young Woon Lim meike Piepenbring Darta Klavina Urmas Kõljalg Kessy Abarenkov mycology and microbiology Center University of TartuTartuEstonia Institute of Ecology and Earth Sciences TartuEstonia Department of Ecology Swedish University of Agricultural SciencesUppsalaSweden Department of Botany University of the PunjabQuaid-e-Azam CampusLahorePakistan Centro de Investigaciones en microbiología y Biotecnología-UR(CImBIUR) Facultad de Ciencias NaturalesUniversidad del RosarioBogotáColombia Grupo de microbiología Ambiental y Biomicro Escuela de MicrobiologíaUniversidad de Antioquia UdeAMedellínColombia Department of Agricultural Food and Forest SciencesUniversity of PalermoPalermoItaly Royal Botanic Gardens SurreyUK Department of Biomedical Sciences University of CagliariCagliariItaly Research Group mycology Department of BiologyGhent UniversityGhentBelgium Department of Biomedicine Indonesia International Institute for Life SciencesJakartaIndonesia Plant Pathology and Agricultural Zoology Research Unit Department of Plant ProtectionFaculty of Agronomy and Agricultural SciencesUniversity of DschangDschangCameroon Department of Ecology and Genetics Uppsala UniversityUppsalaSweden Eukaryotic microbiology University of Duisburg-EssenEssenGermany Department of Biological Sciences and Biotechnology Botswana International University of Science and TechnologyPalapyeBotswana Natural History museum of Zimbabwe BulawayoZimbabwe Institute of Botany Czech Academy of SciencesPrůhoniceCzech Republic Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujingPeople’s Republic of China Department of Botany Jawaharlal Nehru Rajkeeya MahavidyalayaPondicherry UniversityPort BlairIndia British Antarctic Survey NERCCambridgeUK Natural History museum of Denmark University of CopenhagenCopenhagenDenmark Department of Environmental Science Saint Mary’s UniversityHalifaxNSCanada altai State University BarnaulRussia CSIRO Land and Water WembleyWAAustralia Department of N

Fungi are highly important biotic components of terrestrial ecosystems,but we still have a very limited understanding about their diversity and *** data article releases a global soil fungal dataset of the Global Soil mycobiome consortium(GSmc)to boost further research in fungal diversity,biogeography and *** dataset comprises 722,682 fungal operational taxonomic units(OTUs)derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all *** plots are supplied with geographical and edaphic *** OTUs are taxonomically and functionally assigned to guilds and other functional *** entire dataset has been corrected by excluding chimeras,index-switch artefacts and potential *** dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published *** GSmc dataset is available over the PlutoF repository.

关键词： Soil fungi Global dataset PacBio sequencing Fungal richness

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Erratum to “Novel Wavelet-Based Segmentation of Prostate CBCT Images with Implanted Calypso Transponders” [International Journal of medical Physics, Clinical Engineering and Radiation Oncology 6 (2017) 336-343]

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International Journal of medical Physics, Clinical Engineering and Radiation Oncology 2017年第4期6卷 376-376页

作者： Yingxia Liu Ziad saleh Yulin Song maria Chan Xiang Li Chengyu Shi Xin Qian Xiaoli Tang Shandong Communication and media College Jinan China medical Physics Department Memorial Sloan Kettering Cancer Center New York NY USA Radiation Oncology North Shore Long Island Jewish Health System New Hyde Park NY USA

The original online version of this article (Liu, Y.X., saleh, Z., Song, Y.L., Chan, m., Li, X., Shi, C.Y., Qian, X. and Tang, X.L (2017) Novel Wavelet-Based Segmentation of Prostate CBCT Images with Implanted Calypso Transponders. International Journal of medical Physics, Clinical Engineering and Radiation Oncology, 6, 336-343. doi: 10.4236/ijmpcero.2017.63030) was published without acknowledging our support. The authors wish to add the acknowledgments.

关键词： Erratum

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超声波提取后，用原子吸收光谱法测定鱼饲料中的矿物元素

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饲料与畜牧（新饲料） 2009年第2期 56-56页

作者： Neves,R.C.F. moraes,P.m. saleh, m.A.D. Loureiro,V.R. 雷蕾(译者) 李菊(校者)

本研究推荐一种测定鱼饲料样品中钙、镁、锰、锌的方法，即采用超声波提取样品，然后用原子吸收光谱法（FAAS）进行后续的量化。提取液是0．10mol／L的HCl，建立的最佳萃取条件如下：100mg样品；样品粒度小于60μm；3个周期的超声时间为... 详细信息

本研究推荐一种测定鱼饲料样品中钙、镁、锰、锌的方法，即采用超声波提取样品，然后用原子吸收光谱法（FAAS）进行后续的量化。提取液是0．10mol／L的HCl，建立的最佳萃取条件如下：100mg样品；样品粒度小于60μm；3个周期的超声时间为10s；超声功率为102W。这种方法运用于研究尼罗罗非鱼幼鱼日粮饲料样品中这些营养素的消化率。测得的结果与在金属养分提取过程中鱼饲料样品矿化结果一致。

关键词：矿物元素的吸收原子吸收光谱法鱼类营养超声波

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The Palestinian Terrestrial Vertebrate Fauna Preserved at the Biology Exhibitions of the Universities of the Gaza Strip

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Research in Ecology 2020年第4期2卷 9-21页

作者： Abdel Fattah N Abd Rabou Nour J musallam Eman J musallam Kamal E Elkahlout Kamal J Elnabris Tarek A El-Bashiti Ismail I Abdel Aziz Reham m Ishneiwra Eqbal S Radwan Hana S Saada Ashraf A Shafei Nedal A Fayyad saleh N mwafy Huda E Abu Amra Ramy A Abu alajeen mohammed F Abu Owda Randa N alfarra Haifaa A Hassouna Reem A Hassouna mohammed R al-Agha mohammed A Abd Rabou Department of Biology and Biotechnology Islamic University of GazaGaza StripPalestine Department of English Islamic University of GazaGaza StripPalestine Department of Biology Al-Azhar UniversityGaza StripPalestine Department of Biology Al-Aqsa UniversityGaza StripPalestine Department of Geography Al-Aqsa UniversityGaza StripPalestine Department of Curricula and Teaching methods Islamic University of GazaGaza StripPalestine Department of Curricula and Teaching methods Ministry of EducationGaza StripPalestine Department of Pharmaceutical Sciences University of PalestineGaza StripPalestine Department of Environment and Earth Sciences Islamic University of GazaGaza StripPalestine Department of Information Technology University College of Applied SciencesGaza StripPalestine

The Gaza Strip(365 km^(2))of Palestine(27,000 km^(2))is home to a wealth of terrestrial vertebrate *** of these faunistic species find their ways to preservation at the local ***,the current study comes to document the Palestinian terrestrial vertebrate fauna acquired by the biology exhibitions(BEs)of al-Azhar University,Islamic University of Gaza and al-Aqsa University that are located at the Gaza City of the Gaza *** amphibians,reptiles,birds and mam.als preserved at BEs of the universities in question were surveyed and scientifically classified during a three-month period extending from January to march,*** study showed that all BEs of local universities are underdeveloped,lacking attention and suffer from specimen scarcity and good *** BE at al-Azhar University is the best in the arrangement and preservation of bird specimens.A total number of 200 specimens belonging to 54 terrestrial vertebrate fauna species,39 families and 17 orders was recorded at *** constituted 40.7%of the total species recorded,followed by birds(38.9%),mam.als(14.8%)and amphibians(5.6%).The Islamic University of Gaza was considered the best in terms of the number of preserved species(39.8%),followed by al-Azhar University(36.3%)and al-Aqsa University(23.9%).The Common Toad(Bufo viridis)was the most preserved among the amphibian species *** was the biggest reptilian order,comprising 20 species(8 lizards and 12 snakes),with the Syrian Black Snake(Coluber jugularis asianus)was the *** Palestine Viper(Vipera palaestinae)is endemic to Palestine and most venomous and dangerous to human *** Great White Pelican(Pelecanus onocrotalus)was the largest Palestinian bird preserved at BE of al-Azhar *** Egyptian mongoose(Herpestes ichneumon)and the Common Badger(meles meles)were the biggest mam.alian specimens preserved,while the Palestine mole-rat(Spalax leucodon ehrenbergi)was the only Palestine endemic spe

关键词： Terrestrial vertebrate fauna Preservation Biology exhibitions Gaza universities Gaza Strip Palestine

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3.0 T高空间分辨力mR下肢血管成像对比剂剂量的对照性研究

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国际医学放射学杂志 2008年第5期31卷 409-409页

作者： R. Habibi m.S. Krishnam D.G. Lohan F. Barkhordarian m. Jalili R.S.saleh 白荣杰（译）唐光健（校） Department of Radiological Sciences David Geffen School of Medicine at UCLA Peter V. Ueberroth Bldg Suite 3371 10945 Le Conte Ave Los Angeles CA 90095 USA. 不详

目的明确在3．0T设备上行下肢高空间分辨力mR血管成像时，是否可在对比剂剂量减少的情况下仍保持较好的影像质量。方法45例病人（男27例，女18例；平均年龄64岁）在3．0T设备上行下肢增强mR血管成像检查。本研究经学院伦理委员会批准可... 详细信息

目的明确在3．0T设备上行下肢高空间分辨力mR血管成像时，是否可在对比剂剂量减少的情况下仍保持较好的影像质量。方法45例病人（男27例，女18例；平均年龄64岁）在3．0T设备上行下肢增强mR血管成像检查。本研究经学院伦理委员会批准可免除知情同意书。16例采用高剂量（约0．3mmol／kg），15例采用中等剂量（约0．2mmol／kg），14例采用低剂量（约0．1mmol／kg）的马根维显溶液进行3站双相注射检查。将动脉系统从腹腔干到跖动脉分成34个节段评定积分。

关键词： mR血管成像检查下肢血管成像对比剂剂量空间分辨力动脉系统知情同意书伦理委员会影像质量

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高油脂玉米中氨基酸的利用率

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国外畜牧学（饲料） 1999年第2期 27-29页

作者：宁宇虹 C.m.Parsons

前言人们对高油脂玉米(high-oil corn,简称HOC)在家禽中具有的营养价值怀有十分浓厚的兴趣(saleh等,1997)。几项研究已经证实,HOC的代谢能值高于常规玉米 (conventional corn,简称CC;Han等,1987;Dale和Whittle,1991;Adams等,1994;Barto... 详细信息

关键词：高油脂玉米玉米氨基酸利用率饲料

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围孕期补充叶酸和／或多种维生素预防神经管缺陷

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生殖与避孕 2005年第7期25卷 430-434页

作者： Lumnley J Watson L Watson m Bower C 陈晓军丰有吉单位不详

1背景神经管缺陷(NTDs)是在脑和脊索发育过程中形成的先天性畸形,包括无脑儿(颅骨、表面皮肤和脑组织全部或部分缺失)、脊柱裂(脊柱未闭合造成的脊索、脊膜分别或同时突出或暴露;有些病例合并脑积水)和脑膨出(脑膜疝,脑组织位于颅骨外,... 详细信息

1背景神经管缺陷(NTDs)是在脑和脊索发育过程中形成的先天性畸形,包括无脑儿(颅骨、表面皮肤和脑组织全部或部分缺失)、脊柱裂(脊柱未闭合造成的脊索、脊膜分别或同时突出或暴露;有些病例合并脑积水)和脑膨出(脑膜疝,脑组织位于颅骨外,表面被正常或萎缩皮肤覆盖).

关键词：神经管缺陷多种维生素神经管闭合不全预防叶酸孕期皮肤覆盖先天性畸形无脑儿脊柱裂

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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles

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Fungal Diversity 2020年第2期107卷 I0001-I0016页

作者： Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen Rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde marcelo Sandoval-Denis matthew E.Smith merje Toome-Heller Nalin N.Wijayawardene Nelson menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana Corrales Adriene mayra Soares Ahto Agan alexandre Reis machado Andrés Argüelles-moyao Andrew Detheridge Angelina de meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein masigol Ina Timling Inga Hiiesalu Jane Oja John Y.Kupagme József Geml Julieta alvarez-manjarrez Kai Ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett Wagner m.Catherine Aime maarjaÖpik maría Isabel mujica martin metsoja martin Ryberg martti Vasar masao murata matthew PNelsen michelle Cleary milan C.Samarakoon mingkwan Doilom mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.mendes-alvarenga Roberto Garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena saleh Rahimlou Samantha C.Karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-Kaarel Sepp Sunil mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng Yang Tom may Torda Varga Wei Li Victor Rafael matos Coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.mikryukov Yongzhong Lu Yosuke matsuda Yumiko miyamoto Urm Institute of Ecology and Earth Sciences University of Tartu14A Ravila50411 TartuEstonia Natural History museum University of Tartu46 Vanemuise Str51003 TartuEstonia Gothenburg Global Biodiversity Centre Box 46140530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgGothenburgSweden Department of Soil and Environment Swedish University of Agricultural SciencesBox 701475007 UppsalaSweden Department of Forest mycology and Plant Pathology Swedish University of Agricultural SciencesBox 702675007 UppsalaSweden Section for Genetics and Evolutionary Biology(EvoGene) Department of BiosciencesUniversity of OsloP.O.Box 1066BlindernNO-0316 OsloNorway University of Hawaiʻi at mānoa 3190 Maile WaySt.John 102HonoluluHIUSA Department of Biology University of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark Purdue University Northwest WestvilleIN 46391USA Institute of microbiology Czech Academy of SciencesVidenska 108314220 Praha 4Czech Republic GLOBE Institute University of CopenhagenØster Farimagsgade 5KH7.2.321353 CopenhagenDenmark Dipartimento di Scienze della Vita e Biologia dei Sistemi Universitàdi TorinoViale Mattioli 2510125 TorinoItaly Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium Harvard University22 Divinity AveCambridgeMA 02138USA Blaihofstr.42 72074 TübingenGermany SYNLAB Estonia Veerenni 53aTallinn 11313Estonia Escuela de Tecnología médica Universidad Santo TomásLos Carreras 753OsornoChile Centro de Genómica y Bioinformática Universidad MayorCamino La Pirámide 5750HuechurabaSantiagoChile Norwegian Institute for Nature Research(NINA) Sognsveien 680855 OsloNorway School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Evolutionary Biology Faculty of BiologyBiological and Chemical Research CentreUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of Botany Swedish Museum of

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental *** the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and ***,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains *** order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis *** the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,*** resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental *** order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS *** the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.

关键词： Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing Community ecology

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