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The 4th ISGO International Conference on Structural Genomics

作者： Osnat Herzberg Kinlin Chao sadhana pullalarevu Visctoria Doseeva Natalia Gorlatova Igor Pechick Kap Lim Andy Howard John Orban John Moult Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Biological Chemical and Physical Sciences Illinois Institute of Technology Chicago IL USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA Center for Advanced Research in Biotechnology University of Maryland Biotechnology Institute 9600 Gudelsky Dr. Rockville MD 20850 USA

＜正＞In high eukaryotes, a single pre-mRNA can produce many different mRNAs by using different combinations of exons, resulting in different protein products. It is believed that such mRNAs and protein products are responsible for diversifying and fine tuning the functions of the biological system. We are studying the impact of alternative splicing on structure to gain insight about how function diversity emerges by this mechanism. Most of the selected proteins are from human, and

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Marker-based standardization and investigation of nutraceutical potential of Indian propolis

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Journal of Integrative Medicine 2017年第6期15卷 483-494页

作者： nanaware sadhana sathiyanarayanan lohidasan kakasaheb ramoo mahadik department of pharmaceutical chemistry bharati vidyapeeth universitypoona college of pharmacyPune 411038MaharashtraIndia

OBJECTIVE： Propolis, a resinous material collected by honey bees from various plants, has been explored globally for its medicinal and nutritional properties. However, research over Indian propolis is at infancy. This study was designed to investigate nutraceutical potential of Indian propolis. METHODS： In the present study, propolis extract was standardized with respect to markers caffeic acid phenethyl ester, caffeic acid, galangin, luteolin, curcumin, apigenin, pinocembrin and quercetin by new high-performance thin-layer chromatographic （HPTLC） methods. The physico-chemical analysis, residues analysis and in vitro antioxidant activity analysis were performed. Nutraceutical value was examined in terms of fats, fibers, minerals, proteins, polysaccharides, total carbohydrates, and energy value. RESULTS： The developed HPTLC methods were found to be simple, reliable accurate, and the validation parameters were within the limits of the International Council for Harmonization of Technical Requirements for Pharmaceuticals for Human Use guidelines. Macerated ethanolic extract of propolis （MEEP） was found to have polyphenolic content of （20.99 ＋ 0.24） mg/g and flavonoids content of （8.39 ＋ 0.04） mg/g. MEEP was found to comprise of （283.33 ＋ 51.31） g/kg fats, （30.07 ＋ 7.30） g/kg fibers, （102.56 ＋ 2.84） g/kg proteins and （389.36 ＋ 57.50） g/kg carbohydrate with a calorie value of （38 409.33 ＋ 6 169.80） kJ/kg. It was found that Indian propolis exhibited high nutraceutical value and showed absence of pesticides and heavy metals. The MEEP showed in vitro antioxidant activity with inhibitory concentration of （12.24 ＋ 4.64） pg/mL. CONCLUSION： The present work explores Indian propolis as a potential nutritious candidate. The proposed analytical methods can be applied in future screening of the quality of Indian propolis.

关键词： propolis high-performance thin-layer chromatography nutraceutical value antioxidant activity

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Role of angiogenesis in oral squamous cell carcinoma development and metastasis: an immunohistochemical study

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International Journal of Oral Science 2011年第4期3卷 216-224页

作者： Shivakumar Madappa Shivamallappa Narayan Tondikulam Venkatraman Balasundari Shreedhar Leeky Mohanty sadhana Shenoy Department of Oral Pathology and Microbiology The Oxford Dental College Hospital and Research Centre

Although a few studies have shown that vascularity is increased from normal mucosa to dysplasia to carcinoma suggesting that disease progression in the oral mucosa is accompanied by angiogenesis. The role in lymph node metastasis in oral squamous cell carcinoma （OSCC） is equivocal. Role of angiogenesis in OSCC development and metastasis is evaluated in this study. This retrospective study of 50 samples consisted of 9 normal buccal mucosa, 22 leukoplakias, and 19 OSCC. Polyclonal antibodies to von-Willebrand factor were used to highlight the microvessels. Images were captured and morphometric image analysis was done for microvessel density （MVD）, area, and perimeter. Highest, as well as mean values of these three parameters were compared. MVD and perimeter, but not area, are significantly different between normal mucosa and OSCC, and leukoplakia and OSCC. There were no differences between normal mucosa and leukoplakia. MVD, area, and perimeter were not significantly different between the OSCC with and without lymph node metastasis. The highest and mean values of MVD are significantly correlated. In the development of OSCC, angiogenic phenotypic change occurs in carcinomas rather than in the pre-cancerous stage, and quantification of angiogenesis in OSCC does not predict the risk of lymph node metastasis.

关键词： angiogenesis vessel density oral carcinoma metastasis image analysis leukoplakia oral mucosa

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Biomedical Perspective of Electrochemical Nanobiosensor

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Nano-Micro Letters 2016年第3期8卷 193-203页

作者： Priti Singh Shailendra Kumar Pandey Jyoti Singh Sameer Srivastava sadhana Sachan Sunil Kumar Singh Department of Biotechnology Motilal Nehru National Institute of Technology Department of Chemical Engineering Motilal Nehru National Institute of Technology

Electrochemical biosensor holds great promise in the biomedical area due to its enhanced specificity, sensitivity, label-free nature and cost effectiveness for rapid point-of-care detection of diseases at bedside. In this review, we are focusing on the working principle of electrochemical biosensor and how it can be employed in detecting biomarkers of fatal diseases like cancer, AIDS, hepatitis and cardiovascular diseases. Recent advances in the development of implantable biosensors and exploration of nanomaterials in fabrication of electrodes with increasing the sensitivity of biosensor for quick and easy detection of biomolecules have been elucidated in detail. Electrochemical-based detection of heavy metal ions which cause harmful effect on human health has been discussed. Key challenges associated with the electrochemical sensor and its future perspectives are also addressed.

关键词： Biomarkers Point-of-care detection Nanomaterials Electroactive species Potentiometric Amperometric Implantable

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RSMD-repeat searcher and motif detector

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The Journal of Biomedical Research 2014年第5期28卷 416-422页

作者： Udayakumar Mani Vaidhyanathan Mahaganapathy sadhana Ravisankar Sai Mukund Ramakrishnan Department of Bioinformatics School of Chemical and BiotechnologySASTRA University

The functionality of a gene or a protein depends on codon repeats occurring in *** a consequence of their vitality in protein function and apparent involvement in causing diseases,an interest in these repeats has developed in recent *** analysis of genomic and proteomic sequences to identify such repeats requires some algorithmic support from informatics ***,we proposed an offline stand-alone toolkit Repeat Searcher and Motif Detector（RSMD）,which uncovers and employs few novel approaches in identification of sequence repeats and motifs to understand their functionality in sequence level and their disease causing *** tool offers various features such as identifying motifs,repeats and identification of disease causing *** was designed to provide an easily understandable graphical user interface（GUI）,for the tool will be predominantly accessed by biologists and various researchers in all platforms of life *** was developed using the scripting language Perl and its graphical module *** covers algorithmic foundations of computational biology by combining theory with practice.

关键词： motif repeats genomic sequence proteomic sequence computational biology combination algorithm

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煤气化废水生物处理系统中的微生物群落特性

煤气化废水生物处理系统中的微生物群落特性

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作者： sadhana Sah 清华大学

学位级别：硕士

随着煤气化工业的不断发展,中国正面临着由此带来的一系列环境问题。生物处理是煤气化废水处理的核心处理工艺,其中微生物是污染物去除的主体,但对其认识尚十分有限。因此,本研究以两套试验系统(含有固定载体的AO-MBR系统)为对象,考察... 详细信息

随着煤气化工业的不断发展,中国正面临着由此带来的一系列环境问题。生物处理是煤气化废水处理的核心处理工艺,其中微生物是污染物去除的主体,但对其认识尚十分有限。因此,本研究以两套试验系统(含有固定载体的AO-MBR系统)为对象,考察其微生物群落特性,以期为煤气化废水的生物处理工艺提供设计和运行的理论支持。分别从两个系统的缺氧、好氧和膜池采集污泥混合液样品,并采用高通量测序方法对其微生物群落特性进行了研究。分类结果表明,系统中变形菌门所占丰度最高,其变形菌纲为优势纲。基于微生物群落多样性指数的数据分析表明1号系统的缺氧池、好氧池和膜池中各样品的群落多样性、均匀性和多度指数无明显差异(P>0.05)。采用不相似性检测方法Adonis,ANOSIM和MRPP的分析结果表明1号系统的缺氧池、好氧池和膜池中微生物群落结构无明显差异(P>0.05)。同时,聚类分析表明,1号系统中相邻反应池中的微生物群落更相近。此外,Mantel test结果表明进水总氮浓度与微生物群落结构呈显著正相关(P<0.05)。移动窗口分析结果表明2号系统膜池(E)中的微生物变化速率(0.83%-7.72%)低于1号系统膜池(D)中的微生物变化速率(0.85%-15.63%)。这是由于2号系统中水力负荷的增幅(从222L/m3.d增长至267L/m3.d)小于1号系统中水力负荷的增幅(从222L/m3.d增长至356L/m3.d)。这一结果可能表明,水力负荷变化越大,微生物变化速率越大。此外,采用幂律方程进行物种-时间关系(TTR)分析的结果表明,两个系统的膜池中的微生物群落均符合幂律关系。1号系统的膜池内微生物群落的时间周转率为0.13(R2=0.99),低于系统2膜池中微生物群落的时间周转率0.20(R2=0.99)。

关键词：煤气化废水 Illumina测序微生物群落微生物动态变化物种-时间关系(TTR)

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Impact of Plant-Based Antimicrobial Washes on Sensory Properties of Organic Leafy Greens

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Food and Nutrition Sciences 2016年第10期7卷 906-919页

作者： Kamini Joshi Patricia Sparks Mendel Friedman sadhana Ravishankar School of Animal and Comparative Biomedical Sciences University of Arizona Tucson AZ USA Department of Nutritional Sciences University of Arizona Tucson AZ USA USDA-ARS-WRRC Albany CA USA

The objective was to study the sensory attributes of organic leafy greens treated with plant antimicrobials and identify treatments most accepted by panelists. Organic leafy greens were washed with antimicrobials and stored at 4°C for 24 h prior to serving panelists. Antimicrobials evaluated include: 0.1% clove bud, lemongrass, oregano, or cinnamon essential oils;0.1% carvacrol or citral;3% grapeseed, apple, or 10%/7% olive extract;combination of essential oils with extracts;3% hydrogen peroxide;and untreated control. A randomized block design with an affective test was used and 60 panelists were asked to evaluate samples for preference liking based on a 9-point hedonic scale and for sensory attributes based on a 5-point hedonic scale. Changes in texture and color of leafy greens were measured using a Texture analyzer and a Chroma Meter, respectively. On the basis of preference liking, overall acceptability of spinach and lettuce treated with 0.1% cinnamon oil was ranked the highest (7.5 ± 1.4 and 7.1 ± 1.7, moderately liked), respectively. For texture analysis, washing iceberg lettuce with 0.1% oregano oil + 10% olive extract and spinach with 0.1% lemongrass oil + 1% apple extract yielded the highest firmness values of F = 783.1 ± 53.8 Newtons and 939.30 ± 35.2 Newtons, respectively. Based on the International Commission on Illumination CIE LAB color schemes, treatment with 0.1% oregano oil + 10% olive extract had the greatest impact on color of iceberg lettuce with the lowest L value* (44.5 ± 6.2) indicating the darkest color. These results will help identify plant antimicrobials that have the least impact on sensory properties of organic leafy greens and are preferred by consumers.

关键词： Plant Antimicrobials Organic Leafy Greens Sensory Analysis Texture Analysis Color Measurements

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Plant Extracts and Essential Oils at Concentrations Acceptable to a Sensory Panel Inactivate Salmonella Typhimurium DT104 in Ground Pork

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Food and Nutrition Sciences 2021年第2期12卷 162-175页

作者： Cynthia H. Chen John Marchello Mendel Friedman sadhana Ravishankar School of Animal & Comparative Biomedical Sciences University of ArizonaTucson Arizona USA Santa Clara County Crime Laboratory San Jose California USA Western Regional Research Center Agricultural Research Service USDA Albany California USA

A potential method to inhibit pathogenic bacterial growth in meat is through the introduction of plant-derived antimicrobials. Because these antimicrobials may also adversely affect the sensory characteristics of the meat, the objectives of this study were 1) to define the appropriate concentrations of olive extract, apple extract, oregano oil, and cinnamon oil added to ground pork that are acceptable to a sensory panel, and 2) to determine their antimicrobial activities against Salmonella Typhimurium DT104 in inoculated ground pork. Plant extracts were evaluated against two initial inoculum levels (6 and 4 log CFU/g of pork) of Salmonella. Sensory tests showed that acceptable concentrations of oregano and cinnamon oils were 0.5% and of olive and apple extracts were 3%, respectively. Ground pork samples were inoculated with Salmonella, treated with antimicrobials at various concentrations (0.1% - 0.5% cinnamon and oregano essential oils and 3% - 5% olive and apple extracts), and stored at 4

关键词： Essential Oils Ground Pork Plant Extracts Salmonella Typhimurium DT104 Sensory Panel

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Oncofertility:Treatment options from bench to bedside

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Cancer Pathogenesis and Therapy 2023年第4期1卷 284-289页

作者： Divya Gupta Shubham Singh Sangeeta Shukla sadhana Shrivastava Reproductive Biology and Toxicology Lab SOS in ZoologyJiwaji UniversityGwaliorMadhya Pradesh 474011India Department of Zoology Guru Ghasidas VishwavidyalayaBilaspur(C.G.)495009India

In recent years,there has been continuous improvement in the treatment and diagnosis of cancer,which has led to a significant improvement in the survival rate of cancer *** that include chemotherapy,radiotherapy,surgery,or combined therapy have several side effects that may lead to premature ovarian insufficiency in females or substantial male germ cell *** biologists recommend that all patients who are diagnosed with a malignant tumor must undergo a consultation for fertility protection and *** this review,we discuss the background knowledge,methods,and options for fertility preservation and how these new strategies help oncologists,surgeons,pediatricians,and hematologists,conserve fertility and be aware of the concepts,methods,and importance of fertility *** review may aid in the advancement of novel personalized methods for fertility preservation according to patients’conditions.

关键词： Cancer Fertility preservation Embryo cryopreservation Oncofertility

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N-doped mesoporous alumina for adsorption of carbon dioxide

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Journal of Environmental Sciences 2012年第11期24卷 1979-1984页

作者： Jayshri A.Thote Ravikrishna V.Chatti Kartik S.Iyer Vivek Kumar Arti N.Valechha Nitin K.Labhsetwar Rajesh B.Biniwale M.K.N.Yenkie sadhana S.Rayalu Environmental Materials Division National Environmental Engineering Research Institute (NEERI-CSIR)Nagpur 440020India. Lakshminarayan Institute of Technology Nagpur 440001India

N-doped mesoporous alumina has been synthesized using chitosan as the biopolymer template. The adsorbent has been thoroughly investigated for the adsorption of CO2 from a simulated flue gas stream （15% CO2 balanced with N2） and compared with commercially available mesoporous alumina procured from SASOL, Germany. CO2 adsorption was studied under different conditions of pre- treatment and adsorption temperature, inlet CO2 concentration and in the presence of oxygen and moisture. The adsorption capacity was determined to be 29.4 nag CO2/g of adsorbent at 55℃. This value was observed to be 4 times higher in comparison to that of commercial mesoporous alumina at a temperature of 55℃. Basicity of alumina surface coupled with the presence of nitrogen in template in synthesized sample is responsible for this enhanced CO2 adsorption. Adsorption capacity for CO2 was retained in the presence of oxygen; however moisture had a deteriorating effect on the adsorption capacity reducing it to nearly half the value.

关键词： mesoporous alumina chitosan carbon dioxide adsorption flue gas

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