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salinity Distribution at Canal Istanbul and Its Possible Impacts on the Northern Marmara sea

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China Ocean Engineering 2020年第6期34卷 881-888页

作者： Şehriban saÇU Tarkan ERDIK OlgayŞEN Istanbul Technical University MaslakIstanbul 34467Turkey

Turkey has announced its plan to construct a new waterway, Canal Istanbul, parallel to the Bosphorus. In this study,the influence of Canal Istanbul on salinity distribution in the northern Marmara sea is investigated using a previously calibrated 3 D hydrodynamic and salinity model. Moreover, the salinity field of the canal and its propagation are examined based on various meteorological cases. Finally, the flow structure of the canal is determined. It is calculated that at the southern end of the canal, mainly unidirectional flow(from the Black sea to the Marmara sea)occurs during 68% of the simulation period. A two-layer flow is seen only 28% of the time with a weak lower layer flow, whereas this value decreases to 4% at the north end of the canal. In the southward direction(to the Marmara sea), velocities higher than 1.5 m/s are rarely observed along the canal. The average surface salinity difference in the northern Marmara sea due to the construction of the canal is calculated to be smaller than 0.50 ppt. The salinity difference gradually diminishes as water depth increases and after 25 m(from the surface) almost no difference is observed.

关键词： Canal Istanbul Marmara sea salinity distribution hydrodynamic modeling

Computational Prediction of Micro RNAs from Toxoplasma gondii Potentially Regulating the Hosts' Gene Expression

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Genomics, Proteomics & Bioinformatics 2014年第5期12卷 228-238页

作者： Müs?erref Duygu saar Caner Bagc? Jens Allmer Molecular Biology and Genetics Izmir Institute of Technology Urla Izmir 35430 Turkey Biotechnology Izmir Institute of Technology Urla Izmir 35430 Turkey Bionia Incorporated IZTEKGEB A8 Urla Izmir 35430 Turkey

MicroRNAs （miRNAs） were discovered two decades ago, yet there is still a great need for further studies elucidating their genesis and targeting in different phyla. since experimental discovery and validation of miRNAs is difficult, computational predictions are indispensable and today most computational approaches employ machine learning. Toxoplasma gondii, a parasite residing within the cells of its hosts like human, uses miRNAs for its post-transcriptional gene reg- ulation. It may also regulate its hosts＇ gene expression, which has been shown in brain cancer. since previous studies have shown that overexpressed miRNAs within the host are causal for disease onset, we hypothesized that T. gondii could export miRNAs into its host cell. We computationally predicted all hairpins from the genome of T. gondii and used mouse and human models to filter possible candidates. These were then further compared to known miRNAs in human and rodents and their expression was examined for T. gondii grown in mouse and human hosts, respectively. We found that among the millions of potential hairpins in T. gondii, only a few thousand pass filtering using a human or mouse model and that even fewer of those are expressed. since they are expressed and differentially expressed in rodents and human, we suggest that there is a chance that T. gondii may export miRNAs into its hosts for direct regulation.

关键词： Toxoplasma gondii MicroRNA Regulation Host interaction Parasite

Investigation of Particle Breakdown in the Production of Composite Magnesium Chloride and Zeolite Based Thermochemical Energy storage Materials

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Energy Engineering 2023年第10期120卷 2193-2209页

作者： Louis F.Marie Karina sałek Tadhg s.O’Donovan HeriotWatt University Institute of MechanicalProcess and Energy EngineeringEdinburghUK

Composite thermochemical energy storage(TCEs)represents an exciting field of thermal energy storage which could address the issue of seasonal variance in renewable energy ***,there are open questions about their performance and the root cause of some observed *** researchers have observed the breakdown of particles in their production phase,and in their *** study seeks to investigate the underlying cause of this *** and EDX analysis have been conducted on MgCl2 impregnated 13X zeolite composites of differing diameters,as well as LiX *** was done in order to study the level of impregnation of salt into the zeolite matrix,as well as the effect this impregnation process has on the morphology of the *** was conducted using ImageJ software to study the effect of the impregnation process on the diameter of the *** has been found that a by weight impregnation concentration of magnesium chloride of 11.90%for the LiX zeolite,and 7.59%and 5.26%for the large diameter 13X zeolite and the small diameter 13X zeolite respectively has been *** has been found that the impregnation process significantly affects themorphology of 13X zeolite particles,causing large fissures to form,and eventually resulting in the previously found breakdown of these *** has been verified that a primary factor influencing the breakdown of the 13X zeolite particles is the efflorescence and sub-fluorescence phenomena,which leads to a build-up of crystals in the zeolite *** has also been found that prolonged impregnation times and the use of high concentration salt solutions in the soaking process can induce significant crystal growth which also leads to the breakdown of these *** demonstrate that LiX zeolite is the optimum host matrix choice in these *** results will allow for the design of more resilient composite TCEs particles.

关键词： Composites thermochemical energy storage salt-in-porous-matrix zeolites seasonal storage

Constructing and Cleaning Identity Graphs in the LOD Cloud

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Data Intelligence 2020年第3期2卷 323-352页

作者： Joe Raad Wouter Beek Frank van harmelen Jan Wielemaker Nathalie Pernelle Fatiha saïs Deptartment of Computer science Vrije UniversityAmsterdamThe Netherlands Computer science Research Laboratory(LRI)of the University Paris sud French National Centre for Scientific ResearchParis Saclay UniversityOrsayFrance

In the absence of a central naming authority on the semantic Web,it is common for different data sets to refer to the same thing by different *** multiple names are used to denote the same thing,owl:sameAs statements are needed in order to link the data and foster *** that date back as far as 2009,observed that the owl:sameAs property is sometimes used *** our previous work,we presented an identity graph containing over 500 million explicit and 35 billion implied owl:sameAs statements,and presented a scalable approach for automatically calculating an error degree for each identity *** this paper,we generate subgraphs of the overall identity graph that correspond to certain error *** show that even though the semantic Web contains many erroneous owl:sameAs statements,it is still possible to use semantic Web data while at the same time minimising the adverse effects of misusing owl:sameAs.

关键词： Linked Open Data Identity Quality Reasoning

Effects of dietary supplementation of bacteriophage cocktail on health status of weanling pigs in a non-sanitary environment

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Journal of Animal science and Biotechnology 2023年第4期14卷 1661-1677页

作者： Yohan Choi Abdolreza Hosseindoust sang Hun ha Joeun Kim YeJin Min YongDae Jeong JunYoung Mun sooJin sa Jinsoo Kim swine science Division National Institute of Animal ScienceRural Development AdministrationCheonan 31000Republic of Korea Department of Animal Industry Convergence Kangwon National UniversityChuncheon 24341Republic of Korea

Background The study evaluated the effects of bacteriophage cocktail(BP)and ZnO administered during weaning time for piglets exposed to a non-sanitary *** bacteriophages were designed to eliminate Escherichia coli(K88,K99 and F41),salmonella(typhimurium and enteritidis),and Clostridium perfreingens(types A and C).Forty 21-day-old crossbreed piglets were assigned to four treatments,including the PC(sanitary environment),NC(nonsanitary environment),BP(NC plus 108 pfu/kg BP),and ZO(NC plus 2,500 mg/kg ZnO).Piglets in the NC,BP and ZO were kept in a non-sanitary environment for 14 d,which was contaminated with the feces of infected *** Pigs in the BP and ZO treatments had a higher final body weight compared with the *** NC treatment showed the highest concentration of inflammatory cytokines including interleukin(IL)-1β,IL-6 and tumor necrosis factor-αin the *** administration of BP and ZO showed lower myeloperoxidase concentrations compared with the *** NC treatment showed a lower concentration of superoxide dismutase in serum compared with the *** the treatments in non-sanitary environment,the NC treatment showed a higher concentration of malondialdehyde compared with the *** PC treatment showed a lower concentration of butyric acid in the feces compared with the BP *** non-sanitary treatments,the villus height in the duodenum was greater in the BP and ZO compared with the *** lower abundance of Proteobacteria phylum was observed in the BP and PC treatments compared with the *** highest relative abundance of Eubacterium was recorded in the BP *** abundance of Megasphaera and schwartzia was higher in the NC pigs compared with the BP *** abundance of Desulfovibrio was lower in the supplemented treatments(BP and ZO)compared with non-supplemented(NC and PC).The abundance of Cellulosilyticum genera was higher in the BP and ZO treatments rather than in the *** piglets in the NC treatment had the

关键词： Antioxidant Cytokines Diarrhea Fecal score Inflammation Microbiota Proteobacteria

Neutropenic Fever in Lung Cancer:Clinical Aspects Related to Mortality and Antibiotic Failure

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中国肺癌杂志 2021年第11期24卷 764-769页

作者： Inês RODRIGUEs Luísa NAsCIMENTO Ana Cláudia PIMENTA sara RAIMUNDO Bebiana CONDE Ana FERNANDEs Pulmonology Department Centro Hospitalar Trás-os-Montes e Alto DouroVila RealPortugal

Background and objectives:Lung cancer(LC)is the leading cause of cancer *** treated with chemotherapy are at risk of developing chemotherapy-induced febrile neutropenia(FN),a potentially life-threatening *** aims of this study were(1)to characterize FN admissions of patients with LC in a pulmonology department,and(2)to determine associations between patient profiles,first-line antibiotic failure(FLAF)and ***:Retrospective observational case-series,based on the analysis of medical records of LC patients that required hospitalization due to chemotherapy-induced ***:A total of 42 cases of FN were revised,corresponding to 36 patients,of which 86.1%were male,with a mean age of 66.71±9.83 *** patients had a performance status(Ps)equal or less than 1,and metastatic disease was present in 40.5%(n=17).Respiratory tract infections accounted for 42.9%(n=18)of FN cases,and multidrug-resistant staphylococcus aureus was the most isolated *** mortality rate was 16.7%(n=7),and the FLAF was 26.2%(n=11).Mortality was associated with a Ps≥2(P=0.011),infection by a Gram-negative agent(P=0.001)and severe anemia(P=0.048).FLAF was associated with longer hospitalizations(P=0.020),Ps≥2(P=0.049),respiratory infections(P=0.024),and infection by a Gram-negative(P=0.003)or multidrug-resistant agent(P=0.014).Conclusions:Lower Ps,severe anemia,and infections by Gram-negative or multi-resistant agents seem to be associated with worse outcomes in FN patients.

关键词： Febrile neutropenia First-line antibiotic failure Lung neoplasms Mortality

Needle knife fstulotomy in flat and diverticular papillae:Is it time for redemption?

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Hepatobiliary & Pancreatic Diseases International 2022年第2期21卷 175-181页

作者： João Fernandes Jorge Canena Marta Moreira Gonçalo Alexandrino Luísa Figueiredo Tarcísio Araújo Luís Lourenço David Horta Luís Lopes Department of Gastroenterology Santa Luzia Hospital-Unidade Local de Saúde Alto MinhoViana do CasteloPortugal Department of Gastroenterology Professor Doutor Fernando Fonseca HospitalAmadoraPortugal Department of Gastroenterology Nova Medical School/Faculty of Medical SciencesLisbonPortugal University Center of Gastrenterology-Hospital Cuf Tejo LisbonPortugal Life and Health sciences Research Institute(ICVs) School of MedicineUniversity of MinhoBragaPortugal ICVs/3B’s-PT Government Associate Laboratory Braga/GuimarãesPortugal

Background: European society of Gastrointestinal Endoscopy( EsGE) recommends needle-knife fstulotomy(NKF) as the preferred precut technique in cases when standard cannulation techniques fail. Despite scarce scientifc evidence, flat and diverticular papillae are thought not to be ideal for NKF, as they are associated with poor outcomes. The present study aimed to determine the outcomes of the use of NKF in relation to flat and intradiverticular papillae. Methods: This prospective multicenter study enrolled consecutive patients, evidencing na?ve flat(group A, n = 49) or diverticular papilla(group B, n = 28), who underwent NKF after failure of standard cannulation techniques. Diverticular morphology was subdivided into intradiverticular(group B1, n = 14) and diverticular border papillae(group B2, n = 14), using a previously validated endoscopic classifcation of the major papilla. The success of biliary cannulation at initial endoscopic retrograde cholangiopancreatography(ERCP), overall biliary cannulation, overall cannulation time, and the rate of adverse events were assessed in the study. Results: The initial cannulation rates were 93.9%, 64.3% and 71.4% for group A, B1, and B2, respectively( P = 0.005);overall cannulation rates after a second ERCP were 98.0%, 92.9% and 85.7%, respectively( P = 0.134). Adverse events occurred in 11.7% of patients, with post-ERCP pancreatitis(PEP) being the most common adverse event(10.4%). Although there was a trend towards a higher incidence of PEP in flat papillae, univariate and multivariate analyses did not show any signifcant relationship between pancreatitis and trainee involvement, papillary morphology, nor overall cannulation time. Conclusions: Although flat papillae are associated with high success rates of biliary cannulation using NKF, the rate of PEP is not negligible. NKF is feasible in diverticular papillae, but it is associated with a modest success rate in the initial ERCP.

关键词： Endoscopic retrograde cholangiopancreatography Needle-knife fstulotomy small papilla Diverticular papilla Complications

3D Raman mapping as an analytical tool for investigating the coatings of coated drug particles

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Journal of Pharmaceutical Analysis 2023年第3期13卷 276-286页

作者： Georgia Koutentaki Pavel Krýsa Dan Trunov Tomás Pekarek Marketa Pislova Miroslav soos Department of Chemical Engineering University of Chemistry and Technology PraguePrague 616628Czech Republic Zentiva k.s.Prague 1010237Czech Republic

The properties of dry-coated paracetamol particles(fast-dissolving model drug)with carnauba wax particles as the coating agent(dissolution retardant)were *** mapping technique was used to non-destructively examine the thickness and homogeneity of coated *** results showed that the wax existed in two forms on the surface of the paracetamol particles,forming a porous coating layer:i)whole wax particles on the surface of paracetamol and glued together with other wax surface particles,and ii)deformed wax particles spread on the *** of the final particle size fraction(between 100 and 800 mm),the coating thickness had high variability,with average thickness of 5.9±4.2 *** ability of carnauba wax to decrease the dissolution rate of paracetamol was confirmed by dissolution of powder and tablet *** dissolution was slower for larger coated *** further reduced the dissolution rate,clearly indicating the impact of subsequent formulation processes on the final quality of the product.

关键词： Raman mapping Dry-coating Dissolution Particle coating thickness Polymers

selective silencing of 2Cys and type-ⅡB Peroxiredoxins discloses their roles in cell redox state and stress signaling

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Journal of Integrative Plant Biology 2015年第6期57卷 591-601页

作者： Patrícia Vidigal Ana Montserrat Martin-Hernandez Cèlia Guiu-Aragonés sara Amncio Luísa Carvalho Departamento de Recursos Naturais Ambiente e Território (DRAT)/Centro de Botanica Aplicada à Agricultura (CBAA)Institute of AgronomyUniversity of Lisbon Institut de Recercai Tecnologia Agroalimentàries (IRTA) Centre for Research in Agricultural Genomics (CSIC-IRTA-UAB-UB) Campus Universitat Autonoma de Barcelona (UAB)Edificio Center for Research in Agricultural Genomics (CRAG)

Peroxiredoxins （Prx） catalyse the reduction of hydrogen peroxide （H2O2） and, in association with catalases and other peroxidases, may participate in signal transduction by regulating intercel ular H2O2 concentration that in turn can control gene transcription and cel signaling. Using virus-induced-gene-silencing （VIGs）, 2-Cys Peroxiredoxin （2CysPrx） family and type-II Peroxiredoxin B （PrxI B） gene were silenced in Nicotiana benthamiana, to study the impact that the loss of function of each Prx would have in the antioxidant system under control （22℃） and severe heat stress conditions （48 ℃）. The results showed that both Prxs, although in different organel es, influence the regeneration of ascorbate to a significant extent, but with different purposes. 2CysPrx affects abscisic acid （ABA） biosynthesis through ascorbate, while PrxIIB does it probably;through the xanthophyl cycle. Moreover, 2CysPrx is key in H2O2 scavenging and in consequence in the regulation of ABA signal-ing downstream of reactive oxygen species and PrxIIB provides an important assistance for H2O2 peroxisome scavenges.

关键词： 2-Cys Peroxiredoxin abscisic acid ascorbate heat stress hydrogen peroxide peroxisome type-Ⅱ Peroxiredoxin B