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Genomics and morphometrics reveal the adaptive evolution of pikas

Zoological Research 2022年第5期43卷 813-826页

作者： rui-xiang tang Jiao Wang Yi-Fei Li Cheng-Ran Zhou Guan-Liang Meng Feng-Jun Li Yue Lan Megan Price Lars Podsiadlowski Yan Yu Xu-Ming Wang Yin-Xun Liu Bi-Song Yue Shan-Lin Liu Zhen-Xin Fan Shao-Ying Liu Key Laboratory of Bioresources and Ecoenvironment(Ministry of Education) College of Life SciencesSichuan UniversityChengduSichuan 610065China Sichuan Academy of Forestry ChengduSichuan 610081China Key Laboratory of Birth Defects and Related Diseases of Women and Children of MOE Department of PediatricsWest China Second University HospitalSichuan UniversityChengduSichuan 610041China BGI-Shenzhen ShenzhenGuangdong 518083China Zoological Research Museum Alexander Koenig Bonn D-53113Germany Department of Entomology China Agriculture UniversityBeijing 100193China Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife College of Life SciencesSichuan UniversityChengduSichuan 610065China

Pikas(Lagomorpha: Ochotonidae) are small mouselike lagomorphs. To investigate their adaptation to different ecological environments during their dispersal from the Qinghai-Xizang(Tibet) Plateau(QTP), we collected 226 pikas and measured 20 morphological characteristics and recorded habitat information. We also sequenced the genome of 81specimens, representing 27 putative pika species.The genome-wide tree based on 4?090 coding genes identified five subgenera, i.e., Alienauroa, Conothoa,Lagotona, Ochotona, and Pika, consistent with morphometric data. Morphologically, Alienauroa and Ochotona had similar traits, including smaller size and earlier divergence time compared to other pikas.Consistently, the habitats of Alienauroa and Ochotona differed from those of the remaining subgenera. Phylogenetic signal analysis detected 83 genes significantly related to morphological characteristics, including several visual and hearingrelated genes. Analysis of shared amino acid substitutions and positively selected genes(PSGs) in Alienauroa and Ochotona identified two genes, i.e.,mitochondrial function-related TSFM(p.Q155E) and low-light visual sensitivity-related PROM1(p.H419Y).Functional experiments demonstrated that TSFM-155E significantly enhanced mitochondrial function compared to TSFM-155Q in other pikas, and PROM1-419Y decreased the modeling of dynamic intracellular chloride efflux upon calcium uptake. Alienauroa and Ochotona individuals mostly inhabit different environments(e.g., subtropical forests) than other pikas, suggesting that a shift from the larger ancestral type and changes in sensory acuity and energy enhancement may have been required in their new environments. This study increases our understanding of the evolutionary history of pikas.

关键词： Pikas Genomics Morphometrics Adaptive evolution Sensory and energy functions

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Blood transcriptome analysis reveals gene expression features of breast-feeding rhesus macaque(Macaca mulatta)infants

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Zoological Research 2020年第4期41卷 431-436页

作者： Yue Lan Jiao Wang Qiao Yang rui-xiang tang Min Zhou Guang-Lun Lei Jing Li Liang Zhang Bi-Song Yue Zhen-Xin Fan Key Laboratory of Bioresources and Eco-Environment(Ministry of Education) College of Life SciencesSichuan UniversityChengduSichuan 610065China Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife College of Life SciencesSichuan UniversityChengduSichuan 610064China Sichuan Green-House Biotech Co. Ltd.MeishanSichuan 620010China Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife Chengdu Research Base of Giant Panda BreedingSichuan Academy of Giant PandaChengduSichuan 610081China

DEAR EDITOR,During the breast-feeding period,infants undergo remarkable changes,including rapid physiological and developmental growth.However,little is known about gene expression features and sex-specific gene expression in breast-feeding infants.In this study,we sequenced 32 blood transcriptomes from 16 breast-feeding rhesus macaque(Macaca mulatta)infants and their lactating mothers.We identified 218 differentially expressed genes(DEGs)between infants and mothers,including 91 up-regulated and 127 down-regulated DEGs in the infant group.

关键词： mother Blood breast

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Corrosion behaviors and kinetics of nanoscale zero-valent iron in water:A review

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Journal of Environmental Sciences 2024年第1期135卷 391-406页

作者： Chenliu tang Xingyu Wang Yufei Zhang Nuo Liu xiang Hu Research Group of Water Pollution Control and Water Reclamation College of Chemical EngineeringBeijing University of Chemical TechnologyBeijing 100029China Shanghai Collaborative Innovation Centre for WEEE Recycling School of Resources and Environmental EngineeringShanghai Polytechnic UniversityShanghai 201209China

Knowledge on corrosion behaviors and kinetics of nanoscale zero-valent iron(nZVI)in aquatic environment is particularly significant for understanding the reactivity,longevity and stability of nZVI,as well as providing theoretical guidance for developing a cost-effective nZVI-based technology and designing large-scale applications.Herein,this review gives a holistic overview on the corrosion behaviors and kinetics of nZVI in water.Firstly,Eh-pH diagram is introduced to predict the thermodynamics trend of iron corrosion.The morphological,structural,and compositional evolution of(modified-)nZVI under different environmental conditions,assisted with microscopic and spectroscopic evidence,is then summarized.Afterwards,common analytical methods and characterization technologies are categorized to establish time-resolved corrosion kinetics of nZVI in water.Specifically,stable models for calculating the corrosion rate constant of nZVI as well as electrochemical methods for monitoring the redox reaction are discussed,emphasizing their capabilities in studying the dynamic iron corrosion processes.Finally,in the future,more efforts are encouraged to study the corrosion behaviors of nZVI in long-term practical application and further build nanoparticles with precisely tailored properties.We expect that our work can deepen the understanding of the nZVI chemistry in aquatic environment.

关键词： Nanoscale zero-valent iron(nZVI) Corrosion behaviors Corrosion kinetics nZVI evolution

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Insights into in-situ imbibition behavior of fracturing fluid in propped shale fractures based on nuclear magnetic resonance:A case study from Longmaxi Formation shale,Sichuan Basin,China

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Petroleum Science 2024年第1期21卷 410-429页

作者： Jing-Jing Guo Kai-xiang Di Lie-Hui Zhang Yu-Long Zhao Hui-Ying tang rui-Han Zhang Ye Tian National Key Laboratory of Oil and Gas Reservoir Geology and Exploitation Southwest Petroleum UniversityChengdu610500SichuanChina

Shale gas is an important component of unconventional oil and gas resources.Studying the imbibition behavior is helpful to optimize flowback parameters and enhance gas recovery.Recent imbibition studies have focused on shale matrix,and the pressure conditions discussed were mostly atmospheric.The initial imbibition behavior begins from propped fractures to matrix,but there are few studies working on explaining the imbibition behavior in propped fractures or the phenomenon of many shale wells exhibit higher productivity after a“soaking”period.Therefore,propped fracture samples were designed for imbibition and migration experiments.In order to accurately study the mechanism and main influencing factors of fracturing fluid imbibition and migration in propped and unpropped shale fractures under high temperature and high pressure,a series of experiments based on nuclear magnetic resonance(NMR)were carried out.Results showed that NMR T_(2) spectra of all samples exhibited a bimodal distribution.The final imbibition volume of fracturing fluid was positively related to pressure and fracture width.The imbibition effect of fracturing fluid was more evident in matrix pores under high pressure.In the migration during soaking stage,the fracturing fluid gradually migrated from large pores to small pores and gradually displaced the shale gas from the matrix,thus allowing the water blocking in propped fractures to self-unlock to some extent.Gas permeability decreased in the imbibition stage,while it recovered in the migration stage to some extent.

关键词： Forced imbibition Migration Soaking NMR T_(2)spectra Propped fracture Permeability recovery

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Stromal lenticule addition keratoplasty with corneal crosslinking for corneal ectasia secondary to FS-LASIK:a case series

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International Journal of Ophthalmology(English edition) 2024年第3期17卷 596-602页

作者： Li-xiang Wang Ying-Ping Deng Meng-Zhen Xie Ke Ma Hong-Bo Yin Qiong Wang rui Gong Jing tang Department of Ophthalmology West China HospitalSichuan UniversityChengdu 610041Sichuan ProvinceChina West China School of Medicine Sichuan UniversityChengdu 610041Sichuan ProvinceChina

●AIM:To explore the clinical efficacy and safety of stromal lenticule addition keratoplasty(SLAK)with corneal crosslinking(CXL)on patients with corneal ectasia secondary to femtosecond laser-assisted in situ keratomileusis(FS-LASIK).●METHODS:A series of 5 patients undertaking SLAK with CXL for the treatment of corneal ectasia secondary to FS-LASIK were followed for 4-9mo.The lenticules were collected from patients undertaking small incision lenticule extraction(SMILE)for the correction of myopia.Adding a stromal lenticule was aimed at improving the corneal thickness for the safe application of crosslinking and compensating for the thin cornea to improve its mechanical strength.●RESULTS:All surgeries were conducted successfully with no significant complications.Their best corrected visual acuity(BCVA)ranged from 0.05 to 0.8-2 before surgery.The pre-operational total corneal thickness ranged from 345-404μm and maximum keratometry(Kmax)ranged from 50.8 to 86.3.After the combination surgery,both the corneal keratometry(range 55.9 to 92.8)and total corneal thickness(range 413-482μm)significantly increased.Four out of 5 patients had improvement of corneal biomechanical parameters(reflected by stiffness parameter A1 in Corvis ST).However,3 patients showed decreased BCVA after surgery due to the development of irregular astigmatism and transient haze.Despite the onset of corneal edema right after SLAK,the corneal topography and thickness generally stabilized after 3mo.●CONCLUSION:SLAK with CXL is a potentially beneficial and safe therapy for advanced corneal ectasia.Future work needs to address the poor predictability of corneal refractometry and compare the outcomes of different surgical modes.

关键词： corneal ectasia femtosecond laserassisted in situ keratomileusis stromal lenticule addition keratoplasty corneal crosslinking corneal thickness corneal biomechanics

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Identifying the best common factor model via exploratory eactor analysis

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Applied Mathematics(A Journal of Chinese Universities) 2024年第1期39卷 24-33页

作者： HE Bao-hua tang rui TAGN Qi-yi School of Big Data Fuzhou University of International Studies and TradeFuzhou 350202China School of Mathematics Sun Yat-Sen UniversityGuangzhou 510275China Department of Computer Science University of BathUK Institute of Insect Science Zhejiang UniversityHangzhou 310058China.

Currently,there is no solid criterion for judging the quality of the estimators in factor analysis.This paper presents a new evaluation method for exploratory factor analysis that pinpoints an appropriate number of factors along with the best method for factor extraction.The proposed technique consists of two steps:testing the normality of the residuals from the fitted model via the Shapiro-Wilk test and using an empirical quantified index to judge the quality of the factor model.Examples are presented to demonstrate how the method is implemented and to verify its effectiveness.

关键词： factor analysis Shapiro-Wilk normality residuals

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Diet and physical activity influence the composition of gut microbiota,benefit on Alzheimer's disease

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Food Science and Human Wellness 2024年第2期13卷 541-555页

作者： Jinyue Zhou Min tang Wanyi Li rui Fang Chunlan tang Qinwen Wang 无 School of Public Health Health Science CenterNingbo UniversityNingbo 315211China Department of Neurology Ningbo Rehabilitation HospitalNingbo 3151000China Ningbo Institute of Life and Health Industry University of Chinese Academy of SciencesNingbo 315100China Key Laboratory of Diagnosis and Treatment of Digestive System Tumors of Zhejiang Province Ningbo 315100China

Alzheimer's disease is a neurodegenerative disease with complex etiology.Gut microbiota influences the gutbrain axis,which may affect pathways related to the pathogenesis of Alzheimer's disease.Additionally,diet and physical activity are likely to affect the pathology of Alzheimer's disease as well as the gut microbiota.This demonstrates that it may be possible to prevent or halt the progression of Alzheimer's disease by regulating the gut microbiota using diet and physical activity strategies.Therefore,the present study reviews the association between these two interventions and gut microbiota in the human body.It also summarizes how these two interventions benefit Alzheimer's disease.Furthermore,the primary limitations of these two interventions are discussed and promising strategies are proposed,which may be beneficial to further study and develop the intervening measure for the progression of Alzheimer's disease.

关键词： Alzheimer’s disease Gut microbiota Brain-gut axis Diet Physical activity

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A fully distributed robust optimal control approach for air-conditioning systems considering uncertainties of communication link in IoT-enabled building automation systems

Energy and Built Environment

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Energy and Built Environment 2024年第3期5卷 446-454页

作者： Wenzhuo Li rui tang Shengwei Wang Institute for Environmental Design and Engineering The BartlettUniversity College LondonUK Department of Building Environment and Energy Engineering The Hong Kong Polytechnic UniversityKowloonHong Kong Research Institute for Smart Energy The Hong Kong Polytechnic UniversityKowloonHong Kong

Internet of Things(IoT)technologies are increasingly implemented in buildings as the cost-effective smart sens-ing infrastructure of building automation systems(BASs).They are also dispersed computing resources for novel distributed optimal control approaches.However,wireless communication networks are critical to fulfill these tasks with the performance influenced by inherent uncertainties in networks,e.g.,unpredictable occurrence of link failures.Centralized and hierarchical distributed approaches are vulnerable against link failure,while the robustness of fully distributed approaches depends on the algorithms adopted.This study therefore proposes a fully distributed robust optimal control approach for air-conditioning systems considering uncertainties of com-munication link in IoT-enabled BASs.The distributed algorithm is adopted that agents know their out-neighbors only.Agents directly coordinate with the connected neighbors for global optimization.Tests are conducted to test and validate the proposed approach by comparing with existing approaches,i.e.,the centralized,the hierarchical distributed and the fully distributed approaches.Results show that different approaches are vulnerable against to uncertainties of communication link to different extents.The proposed approach always guarantees the optimal control performance under normal conditions and conditions with link failures,verifying its high robustness.It also has low computation complexity and high optimization efficiency,thus applicable on IoT-enabled BASs.

关键词： Multi-agent system Edge computing Air-conditioning system Internet of Things(IoT) Communication link failure

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Cyber-Physical Resilience Enhancement for Power Transmission Systems with Energy Storage Systems

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CSEE Journal of Power and Energy Systems 2024年第2期10卷 844-855页

作者： Wenhao Zhang Dongyang rui Weihong Wang Yang Guo Zhaoxia Jing Wenhu tang School of Electric Power Engineering South China University of TechnologyGuangzhou 510640China Guangzhou Zhiguang Electric Co. Ltd and Zhiguang Research Institute(Guangzhou)Co.LtdGuangzhou 510765China

In a power system, when extreme events occur, such as ice storm, large scale blackouts may be unavoidable. Such small probability but high risk events have huge impact on power systems. Most resilience research in power systems only considers faults on the physical side, which would lead to overly idealistic results. This paper proposes a two-stage cyber-physical resilience enhancement method considering energy storage (ES) systems. The first stage calculates optimal planning of ES systems, and the second stage assesses resilience and enhancement of ES systems during the disaster. In the proposed model, cyber faults indirectly damage the system by disabling monitoring and control function of control center. As a result, when detection and response process of physical faults are blocked by cyber failures, serious load shedding occurs. Such a cyber-physical coupling mechanism of fault, response, restoration process is demonstrated in the modified IEEE Reliable Test System-79 (RTS-79). Simulation results show compared with the physical-only system, the cyber-physical system has a more accurate but degraded resilient performance. Besides, ES systems setting at proper place effectively enhance resilience of the cyber-physical transmission system with less load Shedding.

关键词： Cyber-physical faults energy storage systems resilience enhancement transmission systems

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Authenticated Digital Currency Redaction with Stronger Privacy and Usability

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China Communications 2024年第6期21卷 219-236页

作者： tang Yongli Li Ying Zhao Zongqu Li Yuanhong Guo rui School of Computer Science and Technology Henan Polytechnic UniversityJiaozuo 454000China School of Cyberspace Security Xi’an University of Posts and TelecommunicationsXi’an 710121China

With the promotion of digital currency,how to effectively solve the authenticity,privacy and usability of digital currency issuance has been a key problem.Redactable signature scheme(RSS)can provide the verification of the integrity and source of the generated sub-documents and solve the privacy problem in digital currency by removing blocks from the signed documents.Unfortunately,it has not realized the consolidation of signed documents,which can not solve the problem of merging two digital currencies.Now,we introduce the concept of weight based on the threshold secret sharing scheme(TSSS)and present a redactable signature scheme with merge algorithm(RSS-MA)using the quasi-commutative accumulator.Our scheme can reduce the communication overhead by utilizing the merge algorithm when transmitting multiple digital currency signatures.Furthermore,this can effectively hide the scale of users’private monetary assets and the number of transactions between users.While meeting the three properties of digital currency issuance,in order to ensure the availability of digital currency after redacting,editors shall not remove the relevant identification information block form digital currency.Finally,our security proof and the analysis of efficiency show that RSS-MA greatly improves the communication and computation efficiency when transmitting multiple signatures.

关键词： authenticity verification digital currency privacy protection RSS-MA TSSS usability

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