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Challenges in estimating ancestral state reconstructions:the evolution of migration in Sylvia warblers as a study case

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Integrative Zoology 2020年第3期15卷 161-173页

作者： raquel PONTI Angel ARCONES David R.VIEITES National Museum of Natural Sciences MadridSpain Department of Evolutionary Biology Ecology and Environmental SciencesFaculty of BiologyUniversity of BarcelonaBarcelonaSpain Biodiversity Research Institute(IRBIO) University of BarcelonaBarcelonaSpain

Our current understanding of how species have evolved is mainly based on comparative phylogenetic methods,which use phylogenies to infer the evolution of *** development of ancestral state reconstruction(ASR)methods has provided the tools to reconstruct trait evolution,which are widely used in fields like evolutionary biology,macroecology and *** there are different elements involved in those analyses,with different levels of uncertainty(*** to branch length estimation,trait coding,statistical framework,taxon sampling or software),the various combinations of these elements likely have a strong impact on the reconstruction of the evolution of traits,potentially leading to opposite *** assess the impact of these different elements in ASR,we performed a set of analyses,including all possible combinations of such elements and using the evolution of migratory behavior in Sylvia warblers as a case study,which was coded as a continuous or as a discrete *** results show that taxon sampling,character coding,tree shape,statistical framework and software all significantly affect ASR,both individually and in *** all reconstructed tree nodes show discrepancies,but in the critical ones most pairwise comparisons between analyses lead to conflicting and unexpectedly antagonistic results(zero migration vs fully migratory),thus challenging interpretations of trait *** propose some possible solutions to partly inform decisions,involving the method selection and the incorporation of biological or fossil evidence regarding how traits evolve,but our results demand serious rethinking about how the research community currently uses ASR.

关键词： ancestral state reconstruction conflicting methods evolution of migration Sylvia warblers

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Eosinophilic esophagitis-endoscopic distinguishing findings

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World Journal of Gastroenterology 2012年第31期18卷 4221-4223页

作者： Ana Célia Caetano raquel Goncalves Carla Rolanda Department of Gastroenterology Braga Hospital4710243 BragaPortugal Life and Health Sciences Research Institute School of Health SciencesUniversity of Minho4710057 BragaPortugal Life and Health Sciences Research Institute/3Bs-PT Government Associate Laboratory 4710057 BragaPortugal

Eosinophilic esophagitis （EE） is the most frequent con- dition found in a group of gastrointestinal disorders called eosinophilic gastrointestinal diseases. The hypo- thetical pathophysiological mechanism is related to a hypersensitivity reaction. Gastroesophageal reflux dis- ease-like complaints not ameliorated by acid blockade or occasional symptoms of dysphagia or food impac- tion are likely presentations of EE. Due to its unclear pathogenesis and unspecific symptoms, it is difficult to diagnose EE without a strong suspicion. Although histo- togical criteria are necessary to diagnosis EE, there are some characteristic endoscopic features. We present the case of a healthy 55-year-old woman with dyspha- gia and several episodes of esophageal food impaction over the last six months. This case report stresses the most distinguishing endoscopic findings-mucosa rings, white exudative plaques and linear furrows-that can help in the prompt recognition of this condition.

关键词： Distinguishing findings Dysphagia Eosino-philic esophagitis Gastro esophageal reflux disease Histological criteria

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SYNCHRONOUS COMMUNICATION IN PLM ENVIRONMENTS USING ANNOTATED CAD MODELS

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Journal of Systems Science and Systems Engineering 2016年第2期25卷 142-158页

作者： Jorge D. Camba Manuel Contero Gustavo Salvador-Herranz raquel Plumed College of Architecture University of Houston Houston TX USA I3BH Universitat Politkenica de Valkncia Valencia Spain Depto. de Expresion Grafica Proyectos y Urbanismo Universidad CEU Cardenal Herrera Valencia Spain Depto. de Ingenierla Mecanica y Construccian Universitat Jaume I Castellon Spain

The connection of resources, data, and knowledge through communication technology plays a vital role in current collaborative design methodologies and Product Lifecycle Management （PLM） systems, as these elements act as channels for information and meaning. Despite significant advances in the area of PLM, most communication tools are used as separate services that are disconnected from existing development environments. Consequently, during a communication session, the specific elements being discussed are usually not linked to the context of the discussion, which may result in important information getting lost or becoming difficult to access. In this paper, we present a method to add synchronous communication functionality to a PLM system based on annotated information embedded in the CAD model. This approach provides users a communication channel that is built directly into the CAD interface and is valuable when individuals need to be contacted regarding the annotated aspects of a CAD model. We present the architecture of a new system and its integration with existing PLM systems, and describe the implementation details of an annotation-based video conferencing module for a commercial CAD application.

关键词： Collaborative design PLM design communication CAD integration videoconferencing

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Mycobacterium avium subspecies paratuberculosis and its relationship with Crohn's disease

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World Journal of Gastroenterology 2009年第4期15卷 417-422页

作者： Juan Luis Mendoza raquel Lana Manuel Díaz-Rubio Inflammatory Bowel Disease Unit Department of GastroenterologyHospital Clínico San CarlosUniversidad Complutense Department of Internal Medicine Hospital Clínico San CarlosUniversidad Complutense

The hypothesis postulating that Mycobacterium avium paratuberculosis(MAP) is the cause of Crohn's disease(CD) has been circulating for many *** in molecular techniques,such as polymerase chain reaction and culture methods,have enabled researchers to demonstrate that there is an association between MAP and ***,genome-wide association studies have identified novel susceptibility genes for CD,which are critical for generation of an adaptive immune response that is protective against intracellular pathogens,including *** ***,the role of MAP as a cause of CD suffered a setback with the report that administration of antimycobacterial therapy failed to lead to a sustained response in CD ***,this review sought neither to confirm nor refute this,but instead to survey recent literature on the role of MAP in CD.

关键词： Mycobacterium avium subspecies paratuber-culosis Crohn's diasease Inflammatory bowel disease

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Novel human immunomodulatory T cell receptors and their double-edged potential in autoimmunity,cardiovascular disease and cancer

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Cellular & Molecular Immunology 2021年第4期18卷 919-935页

作者： Pilar Martin Rafael Blanco-Dom fnguez raquel Sanchez-Diaz Vascular Pathophysiology Area Centro Nacional de Investigaciones Cardiovasculares(CNIC)MadridSpain CIBERCV MadridSpain

In the last decade,approaches based on T cells and their immunomodulatory receptors have emerged as a solid improvement in treatments for various types of ***,the roles of these molecules in the therapeutic context of autoimmune and cardiovascular diseases are still relatively ***,we review the best known and most com m only used immunomodulatory T cell receptors in clinical practice(PD-1 and CTLA-4),along with the rest of the receptors with known functions in animal models,which have great potential as modulators in human pathologies in the medium *** ong these other receptors is the receptor CD69,which has recently been described to be expressed in mouse and human T cells in autoimmune and cardiovascular diseases and ***,inhibition of these receptors individually or in combination by drugs or monoclonal antibodies generates a loss of immunological tolerance and can trigger multiple autoimmune disorders in different organs and immune-related adverse *** the coming decades,knowledge on the functions of different immunomodulatory receptors will be pivotal for the development of new and better therapies with less harmful side *** this review,we discuss the roles of these receptors in the control of immunity from a perspective focused on therapeutic potential in not only cancer but also autoimmune diseases,such as systemic lupus erythematosus,autoimmune diabetes and rheumatoid arthritis,and cardiovascular diseases,such as atherosclerosis,acute myocardial infarction,and myocarditis.

关键词： Immunomodulatory receptors Autoimmune diseases T cells Immunotherapy

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Engineering operando methodology： Understanding catalysis in time and space

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Frontiers of Chemical Science and Engineering 2018年第3期12卷 509-536页

作者： raquel Portela Susana Perez-Ferreras Ana Serrano-Lotina Miguel A. Banares Instituto de Catalisis y Petroleoquimica ICP-CSIC Marie Curie 2 Madrid Spain

The term operando was coined at the begin- ning of this century to gather the growing efforts devoted to establish structure-activity relationships by simulta- neously characterizing a catalyst performance and the relevant surface chemistry during genuine catalytic opera- tion. This approach is now widespread and consolidated; it has become an increasingly complex but efficient junction where spectroscopy, materials science, catalysis and engineering meet. While for some characterization techni- ques kinetically relevant reactor cells with good resolution are recently developing, the knowledge gained with magnetic resonance and X-ray and vibrational spectro- scopy studies is already huge and the scope of operando methodology with these techniques is recently expanding from studies with small amounts of powdered solids to more industrially relevant catalytic systems. Engineering catalysis implies larger physical domains, and thus all sort of gradients. Space- and time- resolved multi-technique characterization of both the solid and fluid phases involved in heterogeneous catalytic reactions （including temperature data） is key to map processes from different perspectives, which allows taking into account existing heterogeneities at different scales and facing up- and down-scaling for applications ranging from microstructured reactors to industrial-like macroreactors （operating with shaped catalytic bodies and/or in integral regime）. This work reviews how operando methodology is evolving toward engineered reaction systems.

关键词： operando structured catalysts spaceresolved time-resolved spectroscopy

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Are the cerrado and the seasonal forest woody floras assembled by different processes despite their spatial proximity?

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Journal of Plant Ecology 2018年第5期11卷 740-750页

作者： raquel Carolina Miatto Marco Antonio Batalha Department of Botany Federal University of São CarlosPO Box 67613565-905São CarlosBrazil Department of Biology University of São Paulo14040-901Ribeirão PretoBrazil

Aims The Brazilian cerrado occupies land that could be occupied by seasonal forest,given current climatic conditions and their spatial *** has been identified as one of the main determinants of cerrado and forest *** tested whether cerrado and seasonal forest woody floras were assembled by different *** postulated that soil nutrient availability would account for dif-ferences in the functional and phylogenetic structure of the cerrado and the seasonal *** In 1005×5 m plots distributed along cerrado and seasonal forest patches in south-eastern Brazil,we sampled five individuals with a basal diameter≥3 cm from 127 species and measured seven of their functional traits(plant height,basal area,tortuosity,leaf size,specific leaf area,leaf dry matter content,and leaf toughness).We constructed a phylogenetic tree and calculated the pairwise mean functional-phy-logenetic distances(MFPDs),an approach that accounts for functional and phylogenetic information both separately and *** also sampled soils to a depth of 5 cm in each plot and had their chem-ical and physical properties *** related the MFPD to soil properties and compared MFPD between cerrado and forest *** Findings Phylogenetic distances were higher than functional distances in both cerrado and seasonal forest communities,suggesting trait convergence in both *** of the importance given to functional or phylogenetic information,most of the com-munities in the cerrado and in the seasonal forest fell within the null expectation,implying either that multiple assembly processes can occur simultaneously along the gradient of soil fertility,or that not all important traits were *** was related to soil nutrient status when only functional distances were *** this case,MFPD was lower in the cerrado than in the forest,indi-cating that soil nutrient availability influenced plant traits,with the low-nutrient soils in

关键词： competition functional traits environmental filter nutrient limitation phylogeny savanna

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Diet and intestinal bacterial overgrowth: Is there evidence?

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World Journal of Clinical Cases 2022年第15期10卷 4713-4716页

作者： Claudineia Souza raquel Rocha Helma Pinchemel Cotrim Programa de Pós graduacao em Medicina e Saúde Universidade Federal da BahiaSalvador 40110-060BABrazil Sciences of Nutrition Federal University of BahiaSalvador 40110-060BABrazil

The intestinal microbiota and its role in health and disease processes have been the subject of several *** is known that changes in the intestinal microbiota occur due to several factors,such as the use of medication,age,lifestyle and diseases,which can modify intestinal homeostasis and lead to excessive growth of bacteria in the small intestine,triggering a clinical condition called small bowel bacterial overgrowth(SIBO).Individuals with SIBO may present gastrointestinal symptoms ranging from nausea,diarrhea and/or constipation,and flatulence to distension and abdominal pain,resulting from poor absorption of nutrients or changes in intestinal *** gold-standard treatment is based on the use of antibiotics to eradicate bacterial *** studies have evaluated diets in the treatment of SIBO;however,the studies are of low methodological quality,making extrapolation of the results to clinical practice ***,there is still not enough scientific evidence to support a specific type of diet for the treatment of SIBO.

关键词： Small intestinal bacterial overgrowth Treatment Diet Nutrition

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Muckle-Wells syndrome: manifestations and diagnosis in four generations of a Portuguese family

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World Journal of Pediatrics 2020年第5期16卷 541-542页

作者： Soraia raquel Loureiro Azevedo Daniela Filipa Marinho Peixoto Rheumatology Department Unidade Local de Satúde Do Alto MinhoHospital Conde Bertiandos4990-041Ponte de LimaPortugal

Several medical conditions can present as fever and rash in children,including infections,hypersensitivity reactions and immune-mediated diseases[1].Cryopyrin-associated periodic syndrome(CAPS)is a group of inherited autoinflammatory disorders caused by gain-of-function mutations in the NLRP3 gene(CIAS 1).CAPS encompass a spectrum of diseases including Muckle-Wells syndrome(MWS).The A439V mutation is considered a disease-causing mutation,although clinical phenotypes can be diverse[2].MWS is characterized by recurrent episodes of fever,urticarial rash,arthralgia/arthritis,and more rarely,oral ulcers,folliculitis,or erythema nodosum[3].

关键词： diagnosis CAPS fever

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促进慢性阻塞性肺疾病哮喘患者自我监控空气质量的护理干预措施:整合性综述（英文）

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International Journal of Nursing Sciences 2024年第1期 46-56页

作者： Bruna F.Sebasti?o raquel M.Hortel?o Sara S.Granadas José M.Faria Joana R.Pinto Helga Rafael Henriques Nursing School of Lisbon Hospital Center of Central Lisbon CUF Tejo Hospital University Hospital Center of Northern Lisbon Nursing Research Innovation and Development Centre of Lisbon (CIDNUR)

目的哮喘-慢性阻塞性肺疾病肺重叠症(Asthma-chronic obstructive pulmonary disease overlap,ACO)患者的生活质量较低,肺功能较差,病情经常加重。由于暴露于污染环境会加重其症状,增加发病率和病死率,环境管理对其至关重要。旨在通过... 详细信息

目的哮喘-慢性阻塞性肺疾病肺重叠症(Asthma-chronic obstructive pulmonary disease overlap,ACO)患者的生活质量较低,肺功能较差,病情经常加重。由于暴露于污染环境会加重其症状,增加发病率和病死率,环境管理对其至关重要。旨在通过系统性综述,寻找证据,以指导制订护理干预措施,促进ACO患者对空气质量的自我管理。方法 2023年3月,系统检索CINAHL、Medline、Academic Search Complete、Scopus、Web of Science、Cochrane图书馆、乔安娜布里格斯研究所(Joanna Briggs Institute,JBI)循证实践数据库,以及Google Scholar。对纳入研究进行数据提取和综合,并对护理干预措施进行分类。采用JBI研究质量评估工具进行方法学质量评估。结果共纳入5篇来自不同国家的研究。促进ACO患者自我监控空气质量的干预措施包括:警觉性干预措施(医务人员定期巡诊、进行症状评估),监测干预措施(监测室内外诱发因素),教育干预措施(空气质量警报、避免接触过敏原),以及相关政策的影响,如无烟政策和改善空气质量的综合战略。尽管这些研究报告了不同的干预措施,方法质量也存在差异,但这些干预措施显示了预防患者病情恶化、尽量减少急诊就诊和住院治疗的潜力。这些关键点可作为护理干预措施的关键组成部分。结论有必要采取全面措施,让护士参与促进患者自我监控空气质量的多学科团队、提高认识、制订和实施护理干预,从而使ACO患者受益。同时,需要进一步开展研究,以扩大证据基础并完善这些干预措施。

关键词：空气质量哮喘哮喘-慢阻肺重叠慢性病慢性阻塞性肺疾病护理自我管理

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