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Development of a set of SSR markers for genetic polymorphism detection and interspecific hybrid jute breeding

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The Crop Journal 2017年第5期5卷 416-429页

作者： Dipnarayan Saha rajeev singh Rana Sukla Chakraborty Subhojit Datta Arroju Anil Kumar Asim Kumar Chakraborty Pran Gobinda Karmakar Division of Crop Improvement Indian Council of Agricultural Research (ICAR)-Central Research Institute for Jute and Allied Fibers

Corchorus capsularis(white jute) and C. olitorius(dark jute) are the two principal cultivated spedes of jute that produce natural bast fiber of commercial importance. We have identified 4509 simple sequence repeat(SSR) loci from 34,163 unigene sequences of C. capsularis to develop a non-redundant set of 2079 flanking primer pairs. Among the SSRs, trinudeotide repeats were most frequent(60%) followed by dinucleotide repeats(37.6%). Annotation of the SSR-containing unigenes revealed their putative functions in various biological and molecular processes, including responses to biotic and abiotic signals. Eighteen expressed gene-derived SSR(eSSR) markers were successfully mapped to the existing single-nucleotide polymorphism(SNP) linkage map of jute,providing additional anchor points. Amplification of 72% of the 74 randomly selected primer pairs was successful in a panel of 24 jute accessions, comprising five and twelve accessions of *** and C. olitorius, respectively, and seven wild jute spedes. Forty-three primer pairs produced an average of 2.7 alleles and 58.1% polymorphism in a panel of 24 jute accessions. The mean PIC value was 0.34 but some markers showed PIC values higher than 0.5, suggesting that these markers can efficiently measure genetic diversity and serve for mapping of quantitative trait loci(QTLs) in jute. A primer polymorphism survey with parents of a wide-hybridized population between a cultivated jute and its wild relative revealed their efficacy for interspecific hybrid identificatioii. For ready accessibility of jute eSSR primers, we compiled all information in a user-friendly web database, JuteMarkerdb(http://***/) for the first time in *** eSSR resource in jute is expected to be of use in characterization of germplasm, interspecific hybrid and variety identification, and marker-assisted breeding of superior-quality jute.

关键词： Database Genic-SSR Jute Interspecific hybrid identification Unigene sequences

A comprehensive review of rectangular duct solar air heaters featuring artificial roughness

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Clean Energy 2024年第5期8卷 186-217页

作者： Ravi Shankar rajeev Kumar Arun Kumar Pandey Deep singh Thakur Department of Mechanical Engineering Rajkiya Engineering College BandaUttar Pradesh 210201India Department of Mechanical Engineering Institute of Engineering&TechnologyLucknowUttar Pradesh 226021India Department of Mechanical Engineering Bundelkhand Institute of Engineering&TechnologyJhansiUttar Pradesh 284128India

Solar air heaters(SAHs)are widely used solar thermal systems with applications in diverse ***,its effectiveness is re-strained by low convective heat transfer(HT)coefficients at the absorber plate,leading to inefficient HT,and the elevated temperature of the absorber plate causes significant heat losses,reducing thermal *** study addresses these challenges by introducing ribs or roughness on the absorber plate creating turbulence in the airflow,resulting in significant *** research inves-tigates various rib configurations,the influence of rib parameters,performance methods,and arrangements to evaluate their HT and friction *** these rib configurations,a comparative analysis is done on various factors such as the Nusselt number ratio,thermal enhancement factor,friction factor ratio,and thermal efficiency to optimize distinct roughness parameters and rib ar-rangement *** study also provides valuable recommendations from existing literature,offering insights into the effective design,prospects,and implementation of SAH systems.

关键词： solar air heater artificial roughness low heat transfer heating solar energy

Advances in the Structural Composition of Biomass:Fundamental and Bioenergy Applications

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Journal of Renewable Materials 2021年第4期9卷 615-636页

作者： Neha Srivastava Akshay Shrivastav rajeev singh Mohammed Abohashrh K.R.Srivastava Safia Irfan Manish Srivastava P.K.Mishra Vijai Kumar Gupta Vijay Kumar Thakur Department of Chemical Engineering and Technology Indian Institute of Technology(BHU)Varanasi221005India Department of Chemical Engineering Madan Mohan Malaviya University of TechnologyGorakhpur273010India Department of Environmental Studies Satyawati CollegeUniversity of DelhiDelhi110052India Department of Basic Medical Sciences College of Applied Medical SciencesKing Khalid UniversityAbhaSaudi Arabia Departentof Biotechnology Faculty of BiosciencesIntegral UniversityLucknow226026India Biorefining and Advanced Materials Research Center Scotland’s Rural College(SRUC)EdinburghEH93JGUK

Increased environmental pollution due to the organic wastes over the world is one of the most burning *** organic wastes lie under the category of biodegradable waste and can be effectively degraded from their complex compound into simple one by the action of microbes or other living ***,lignocellulosic biomass is a major part of the biodegradable waste and belongs to the group of renewable energy source,which can be very effective for bioenergy *** are made up of different compounds such as cellulose,hemicelluloses,lignin and *** from these components,based on the structural analysis biomass also consist of bioactive substances such as carotenoids,flavonoids,lignin and *** review explores a complete overview of the classification,component and the structure of the ***,it discusses how biomasses can play the key role of substrate in many sectors such as industrial bioenergy production including gaseous and liquid biofuels.

关键词： Biomass classification composition bioactive substance biofuels

CuO–TiO_(2) based self-powered broad band photodetector

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Nano Materials Science 2024年第3期6卷 345-354页

作者： Chiranjib Ghosh Arka Dey Iman Biswas rajeev Kumar Gupta Vikram singh Yadav Ashish Yadav Neha Yadav Hongyu Zheng Mohamed Henini Aniruddha Mondal Department of Physics National Institute of Technology DurgapurWest BengalIndia Department of Physics University of Petroleum&Energy Studies DehradunUttarakhandIndia Babasaheb Bhimrao Ambedkar University Lucknow226031India Center for Advanced Laser Manufacturing(CALM) Shandong University of TechnologyZibo255000PR China School of Physics and Astronomy University of NottinghamNottinghamNG72RDUnited Kingdom

An efficient room-temperature self-powered,broadband(300 nm–1100 nm)photodetector based on a CuO–TiO_(2)/TiO_(2)/p-Si(100)heterostructure is *** CuO–TiO_(2)nanocomposites were grown in a two-zone horizontal tube furnace on a 40 nm TiO_(2)thin film deposited on a p-type Si(100)*** CuO–TiO_(2)/TiO_(2)/p-Si(100)devices exhibited excellent rectification characteristics under dark and individual photoillumination *** devices showed remarkable photo-response under broadband(300–1100 nm)light illumination at zero bias voltage,indicating the achievement of highly sensitive self-powered photodetectors at visible and near-infrared light *** maximum response of the devices is observed at 300 nm for an illumination power of 10 *** response and recovery times were calculated as 86 ms and 78 ms,***,under a small bias,the devices showed a prompt binary response by altering the current from positive to negative under illumination *** main reason behind this binary response is the low turn-on voltage and photovoltaic characteristics of the *** illumination conditions,the generation of photocurrent is due to the separation of photogenerated electron-hole pairs within the built-in electric field at the CuO–TiO_(2)/TiO_(2)*** characteristics make the CuO–TiO_(2)/TiO_(2)broadband photodetectors suitable for applications that require high response speeds and self-sufficient functionality.

关键词： Self-powered CuO–TiO_(2) nanocomposite Broadband photodetector Two-zone horizontal tube furnace Responsivity

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鲤科鱼蓝黑鲮微卫星位点的种间扩增(英文)

动物学报 2008年第5期54卷 937-940页

作者： rajeev Kumar singh Kuldeep Kumar LAL Vindhya MOHINDRA Peyush PUNIA Wazir singh LAKRA National Bureau of Fish Genetic Resources(ICAR) Canal Ring RoadP.O.DilkhushaLucknow 226002(UP)India

本研究使用105对微卫星引物对7种鲤科鱼类进行跨越种间PCR扩增,共得到14个多态性微卫星位点。其中9个扩增效果较好的位点用于分析来自帕吉勒提河(Bhagirathi,n=20)和戈达瓦里河(Godavari,n=25)的蓝黑鲮(Labeocalbasu)样品的遗传多样性... 详细信息

本研究使用105对微卫星引物对7种鲤科鱼类进行跨越种间PCR扩增,共得到14个多态性微卫星位点。其中9个扩增效果较好的位点用于分析来自帕吉勒提河(Bhagirathi,n=20)和戈达瓦里河(Godavari,n=25)的蓝黑鲮(Labeocalbasu)样品的遗传多样性。结果显示,前者在每个位点的平均等位基因数为7.33,而后者为8.11,期望杂合度介于0.795(Bhagirathi)和0.801(Godavari)之间;4个位点MFW11*(Godavari)、R1*(Godavari)、R3*(Bhagirathi)和Lr38*(Bhagirathi和Godavari)都表现出明显的杂合子缺失和哈迪温伯格平衡偏离;而任意两位点间都未观测到连锁不平衡现象;位点R3*极可能存在无效等位基因。上述结果表明这些多态性微卫星位点作为共显性标记在蓝黑鲮群体遗传学研究中有着较好的应用前景。

关键词：蓝黑鲮跨越种间扩增微卫星位点多态性遗传变异无效等位基因

Genealogy and phylogeography of Cyprinid fish Labeo rohita （Hamilton, 1822） inferred from ATPase 6 and 8 mitochondrial DNA gene analysis

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Current Zoology 2014年第4期60卷 460-471页

作者： Rupesh K. LUHARIYA Kuldeep K. LAL rajeev K. singh Vindhya MOHINDRA Arti GUPTA Prachi MASIH Arvind K. DWIVEDI Rakhi DAS U. K. CHAUHAN J. K. JENA National Bureau ofFish Genetic Resources (ICAR) Lucknow- 226 002 UP India School of Environmental Sciences APS University Rewa- 486 003 MP India

ATPase 6/8 gene （842 bp） of mitochondrial DNA was sequenced in Labeo rohita samples （n = 253） collected from nine rivers belonging to four river basins; Indus, Ganges, Brahmaputra and Mahanadi. Analysis revealed 44 haplotypes with high haplotype diversity （Hd） 0.694 and low nucleotide diversity （π） 0.001. The within population variation was larger （83.44%） than among population differences （16.56%）. The mean Fsv value （0.166; P 〈 0.05） for overall populations revealed moderate level of genetic structuring in the wild L. rohita populations. The haplotype network presented a single clade for wild L. rohita population, from different rivers. Negative values for Fu＇s index （Fs）, mismatch distribution analysis indicated period of expansion in L. rohita population. The time after recent expansion was estimated for each population, between 0.042 to 0.167 mya. The pattern of Isolation by Distance （IBD） was not significant （r = -0.113, P 〈 0.287）, when all the sampling locations were compared （Mantel test）, however, when an outlier （Indus, Brahmaputra and Mahanadi） was removed from the whole population set, a clear positive correlation between pairwise Fsv and geographic distance （Km） was seen. The analysis of data demonstrated that ATPase6/8 gene polymorphism is a potential marker to understand genetic population structure of wild L. rohita existing in different rivers. The study identified population substructure in wild L. rohita with common ancestral origin [Current Zoology 60 （4）： 460--471, 2014].

关键词： Labeo rohita ATPase6/8 mtDNA Polymorphism Genetic Divergence India

Insights into the interface of NiCo_(2)O_(4) spinel/LaCoO_(3) perovskite nano-composite for CO and soot oxidation

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Journal of Environmental Sciences 2024年第4期138卷 339-349页

作者： Neha Harshita singh Satya Vir singh Department of Chemical Engineering Indian Institute of Technology(BHU)Varanasi221005India Department of Botany Institute of ScienceBanaras Hindu UniversityVaranasi221005India

In the quest for the development of thermally stable,highly active and low-cost catalysts for use in catalyzed diesel particulate filter,nano-composites are new areas of ***,we reported the easy synthesis of spinel NiCo_(2)O_(4)/perovskite LaCoO_(3) nano-composite,and its individual oxides NiCo_(2)O_(4)and LaCoO_(3) for *** detailed insights into the physio-chemical characteristics of formed NiCo_(2)O_(4)/LaCoO_(3) nano-composite were done based on various characterization analysis such as X-ray diffraction(XRD),Fourier transform infrared(FT-IR),N_(2) physiosorption,scanning electron microscopy-energy dispersive spectroscopy(SEM-EDX),transmission electron microscopy(TEM),and X-ray photoelectron spectroscopy(XPS).The characterization analysis of NiCo_(2)O_(4)/LaCoO_(3) revealed the successful formation of a chemical interface possessing strong interfacial interaction,resulting in desirable physicochemical characteristics such as small crystallite size,abundant mesoporosity,high specific surface area and activation of surface lattice *** to the desirable characteristics,the activity results over NiCo_(2)O_(4)/LaCoO_(3) nano-composite showed the excellent CO oxidation performance and high soot oxidation activity,recyclability and thermal *** work mainly attempts to emphasize the effectiveness of the facile,inexpensive and conventionally used precipitation method for the successful formation of highly efficient nano-composites.

关键词： LaCoO_(3) NiCo_(2)O_(4) Spinel/perovskite CO oxidation Soot oxidation Chemical interface

Snow and regolith albedo variations using CRISM data at McMurdo crater,Mars

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Earth and Planetary Physics 2024年第2期8卷 338-355页

作者： Sehajpal singh Deepak singh Centre of Studies in Resources Engineering Indian Institute of Technology BombayMumbaiIndia

The cryosphere component provides the most reliable and insightful indications of any planet’s climate *** data from the Compact Reconnaissance Imaging Spectrometer for Mars(CRISM),we develop a novel approach to determining the broadband Visible and Near Infrared(VNIR)albedo of the Martian *** study focuses on albedo changes in the McMurdo crater,part of Mars’s south polar layer *** compare seasonal and interannual variations of the McMurdo surface albedo before,during,and after the Global Dust Storm(GDS)of Martian Year(MY)*** the seasons progressed from spring to summer,the mean albedo in MY 32 and 34 plunged by over 40%,by about 35%in MY 33,and by slightly more than 30%in MY *** interannually,however,mean albedo values within both seasons(spring and summer)exhibited no significant differences in those same ***,interannual albedo difference maps reveal albedo variation of more than±0.3 in certain regions of the *** only snow-covered pixels,interannual albedo differences suggest that Mars dust had a pervasive impact on Mars’s *** in maximum and minimum albedo values as high as 0.5 were observed,depending upon differences in the dust levels in Martian snow/*** maximum and the minimum snow albedo values were lowest in MY 34,indicating the effect of the intense dust storm event that *** average snow albedo decreased from 0.45 in MY 32 to 0.40 in MY 33 and to 0.33 in MY 34,and then rose back to 0.40 in MY *** trajectory suggests a temporary deposition of dust,partially reversed after the GDS by self-cleaning mechanisms(local aeolian process and CO_(2)sublimation/deposition cycle).

关键词： Mars Martian ice albedo dust storm Mars surface Martian climate

Identification of polymorphic allozyme markers for assessing genetic variability in Labeo dyocheilus (McClelland,1839)

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动物学报 2005年第1期51卷 167-170页

作者： Peyush PUNIA Lalit NARAIN Vindhya MOHINDRA Anshumala BHARDWAJ rajeev Kumar singh Dhurendra KAPOOR Kuldeep Kumar LAL National Bureau of Fish Genetic Resources(ICAR) Canal Ring RoadP.O.DilkhushaTelibaghLucknow-226002(UP)India

The Labeo dyocheilus(family Cyprinidae)in-habits fresh water streams at the fo thill regions and is a commercially important food *** is native to Afganistan,Pakistan,India,Nepal,Bhutan,Bangladesh,M yanmnar,Cambodia and Thailand(Froese and Pauly,2003).In India,the species in-habits the Indus,Ganges and Mahanadi river *** is identified as a potential cultivable species and has considerable significance for the fishery of these *** has been categorized as a vulnerable fish due to declining commercial catches in India(Mahanta et a1.,1994).At present the fishery is supported through capture from natural *** achieve domestication,various aspects of captive breeding and propagation are being studied.

关键词： Labeo dyocheilus Polymorphic allozyme Genetic variability