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Unravelling lncRNA mediated gene expression as potential mechanism for regulating secondary metabolism in Citrus limon

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Food Bioscience 2022年第2期46卷 703-718页

作者： Kuntala Sarma Bordoloi pooja moni baruah Mami Das Niraj Agarwala Department of Botany Gauhati UniversityGopinath Bordoloi NagarGuwahatiAssam781014India

Plant long non-coding RNAs(lncRNAs)are emerging as important regulators of gene expression through various mechanisms *** to double-stranded DNA(dsDNA),physically targeting mRNAs and also act as microRNA(miRNA)*** secondary metabolites and their content determine the market value of Citrus plant products for culinary and industrial *** lncRNAs are emerging as important molecular players that regulate secondary metabolites in plants but the roles of lncRNAs are yet unknown for the regulation of secondary metabolites in Citrus *** this study,a total of 11814 lncRNAs were identified from four RNA-seq datasets comprising of data from four different tissues of *** ***,bud,fruit and ***-expression analysis of whole set of genes with identified lncRNAs revealed a total of 632 lncRNAs correlating with 5810 *** annotation of genes correlating with lncRNAs unveiled the association of 379 genes with the biosynthesis of secondary metabolite pathways and among them,36 and 12 genes are from terpenoids and flavonoids metabolism/biosynthesis pathways *** correlation analysis unfolded the possible role of 113 lncRNAs in terpenoids metabolism and 29 lncRNAs in the flavonoids metabolic *** nine lncRNAs were predicted to take part in miRNA-mediated gene regulation,out of which 10 lncRNAs were predicted to act as endogenous target mimics(eTMs)for miRNAs and 74 lncRNAs were found to act as miRNA *** of six predicted lncRNAs and seven correlated genes involved in terpenoids and flavonoids metabolism were validated using semi-quantitative RT-PCR.

关键词： Citrus limon Long non-coding RNA Terpenoids Flavonoids Co-expression

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