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Metabolomic, Transcriptional, Hormonal, and Signaling Cross-Talk in Superroot2

Molecular Plant 2010年第1期3卷 192-211页

作者： Marc Morant Claus Ekstrom peter ulvskov Charlotte Kristensen Mats Rudemo Carl Erik Olsen Jorgen Hansen Kirsten Jorgensena Bodil Jorgensen Birger Lindberg Moilera Soren Bak Plant Biochemistry Laboratory Department of Plant Biology and Biotechnology University of Copenhagen 40 Thorvaldsensvej DK-1871 FrederiksbergC Copenhagen Denmark Center for Molecular Plant Physiology University of Copenhagen. DK-1871 Frederiksberg C Copenhagen Denmark Department of Natural Sciences University of Copenhagen DK-1871 Frederiksberg C Copenhagen Denmark VKR research centre 'Pro-Active Plants' Plant Biochemistry Laboratory Department of Plant Biology and Biotechnology University of Copenhagen DK-1871 Frederiksberg C Copenhagen Denmark Evolva A/S Bulowsvej 25 DK-1870 Frederiksberg C Copenhagen Denmark Center for Applied Bioinformatics at LIFE University of Copenhagen 40 Thorvaldsensvej DK-1871 Frederiksberg C Copenhagen Denmark

Auxin homeostasis is pivotal for normal plant growth and development. The superroot2 （sur2） mutant was initially isolated in a forward genetic screen for auxin overproducers, and SUR2 was suggested to control auxin conju- gation and thereby regulate auxin homeostasis. However, the phenotype was not uniform and could not be described as a pure high auxin phenotype, indicating that knockout of CYP83B1 has multiple effects. Subsequently, SUR2 was identified as CYP83B1, a cytochrome P450 positioned at the metabolic branch point between auxin and indole glucosinolate metabolism. To investigate concomitant global alterations triggered by knockout of CYP83B1 and the countermeasures chosen by the mutant to cope with hormonal and metabolic imbalances, 10-day-old mutant seedlings were characterized with respect to their transcriptome and metabolome profiles. Here, we report a global analysis of the sur2 mutant by the use of a combined transcriptomic and metabolomic approach revealing pronounced effects on several metabolic grids including the intersection between secondary metabolism, cell wall turnover, hormone metabolism, and stress responses. Metabolic and transcriptional cross-talks in sur2 were found to be regulated by complex interactions between both positively and negatively acting transcription factors. The complex phenotype of sur2 may thus not only be assigned to elevated levels of auxin, but also to ethylene and abscisic acid responses as well as drought responses in the absence of a water deficiency. The delicate balance between these signals explains why minute changes in growth conditions may result in the non-uniform phenotype. The large phenotypic variation observed between and within the different surveys may be reconciled by the complex and intricate hormonal balances in sur2 seedlings decoded in this study.

关键词： Abiotic/environmental stress hormonal regulation metabolomics secondary metabolism/natural products transcriptome analysis development.

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