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Impacts of Aggregation Methods and Trophospecies Number on the Structure and Function of Marine Food Webs

Journal of Ocean University of China 2024年第1期23卷 190-198页

作者： LI pengcheng ZHANG Chongliang XU Binduo JI Yupeng LI Fan REN Yiping XUE Ying Laboratory of Fisheries Ecosystem Monitoring and Assessment College of FisheriesOcean University of ChinaQingdao 266003China Field Observation and Research Station of Haizhou Bay Fishery Ecosystem Ministry of EducationQingdao 266003China Shandong Marine Resources and Environment Research Institute Shandong Provincial Key Laboratory of Restoration for Marine EcologyYantai 264006China Laboratory for Marine Fisheries Science and Food Production Processes Laoshan LaboratoryQingdao 266237China

Aggregation of species with similar ecological properties is one of the effective methods to simplify food web ***,species aggregation will affect not only the complexity of modeling process but also the accuracy of models’*** of aggregation methods and the number of trophospecies are the keys to study the simplification of food *** this study,three aggregation methods,including taxonomic aggregation(TA),structural equivalence aggregation(SEA),and self-organizing maps(SOM),were analyzed and compared with the linear inverse model–Markov Chain Monte Carlo(LIM-MCMC)*** of aggregation methods and trophospecies number on food webs were evaluated based on the robustness and unitless of ecological net-work *** showed that aggregation method of SEA performed better than the other two methods in estimating food web structure and function *** effects of aggregation methods were driven by the differences in species aggregation principles,which will alter food web structure and function through the redistribution of energy *** to the results of mean absolute percentage error(MAPE)which can be applied to evaluate the accuracy of the model,we found that MAPE in food web indices will increase with the reducing trophospecies number,and MAPE in food web function indices were smaller and more stable than those in food web structure ***,trade-off between simplifying food webs and reflecting the status of ecosystem should be con-sidered in food web *** findings highlight the importance of aggregation methods and trophospecies number in the analy-sis of food web *** study provided a framework to explore the extent to which food web models are affected by dif-ferent species aggregation,and will provide scientific basis for the construction of food webs.

关键词： LIM-MCMC model species aggregation trophospecies number aggregation methods food web indices

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GATiT:An Intelligent Diagnosis Model Based on Graph Attention Network Incorporating Text Representation in Knowledge Reasoning

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Computers, Materials & Continua 2024年第9期80卷 4767-4790页

作者： Yu Song pengcheng Wu Dongming Dai Mingyu Gui Kunli Zhang School of Computer and Artificial Intelligence Zhengzhou UniversityZhengzhou450001China

The growing prevalence of knowledge reasoning using knowledge graphs(KGs)has substantially improved the accuracy and efficiency of intelligent medical ***,current models primarily integrate electronic medical records(EMRs)and KGs into the knowledge reasoning process,ignoring the differing significance of various types of knowledge in EMRs and the diverse data types present in the *** better integrate EMR text information,we propose a novel intelligent diagnostic model named the Graph ATtention network incorporating Text representation in knowledge reasoning(GATiT),which comprises text representation,subgraph construction,knowledge reasoning,and diagnostic *** the text representation process,GATiT uses a pre-trained model to obtain text representations of the EMRs and additionally enhances embeddings by including chief complaint information and numerical information in the *** the subgraph construction process,GATiT constructs text subgraphs and disease subgraphs from the KG,utilizing EMR text and the disease to be *** differentiate the varying importance of nodes within the subgraphs features such as node categories,relevance scores,and other relevant factors are introduced into the text ***-passing strategy and attention weight calculation of the graph attention network are adjusted to learn these features in the knowledge reasoning ***,in the diagnostic classification process,the interactive attention-based fusion method integrates the results of knowledge reasoning with text representations to produce the final diagnosis *** results on multi-label and single-label EMR datasets demonstrate the model’s superiority over several state-of-theart methods.

关键词： Intelligent diagnosis knowledge graph graph attention network knowledge reasoning

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Solitary,periodic,kink wave solutions of a perturbed high-order nonlinear Schrödinger equation via bifurcation theory

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Propulsion and Power Research 2024年第3期13卷 433-444页

作者： Qiancheng Ouyang Zaiyun Zhang Qiong Wang Wenjing Ling pengcheng Zou Xinping Li School of Mathematics Hunan Institute of Science and TechnologyYueyangHunan 414006China School of Mathematics and Computational Science Hunan University of Science and TechnologyXiangtanHunan 411201China

In this paper,by using the bifurcation theory for dynamical system,we construct traveling wave solutions of a high-order nonlinear Schrödinger equation with a quintic ***,based on wave variables,the equation is transformed into an ordinary differential ***,under the parameter conditions,we obtain the Hamiltonian system and phase ***,traveling wave solutions which contains solitary,periodic and kink wave so-lutions are constructed by integrating along the homoclinic or heteroclinic *** addition,by choosing appropriate values to parameters,different types of structures of solutions can be displayed ***,the computational work and it’sfigures show that this tech-nique is influential and efficient.

关键词： Traveling wave solution High-order nonlinear Schrödinger equation Bifurcation theory Dynamical system Hamiltonian system

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Pyridapeptides F–I,cyclohexapeptides from marine sponge-derived Streptomyces ***-4539

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Chinese Chemical Letters 2024年第7期35卷 341-344页

作者： Shuige Zhao pengcheng Yan Peipei Liu Haishan Liu Ning Li Peng Fu Weiming Zhu Key Laboratory of Marine Drugs Ministry of Education of ChinaSchool of Medicine and PharmacyOcean University of ChinaQingdao 266003China Key Laboratory for Marine Drugs and Bioproducts Laoshan LaboratoryQingdao 266237China School of Biological Science and Technology University of JinanJi'nan 250022China Key Laboratory for Biosensors of Shandong Province Biology InstituteQilu University of TechnologyJi'nan 250103China

Four new cyclohexapeptides,pyridapeptides F–I(1–4),were isolated from the fermentation broth of marine sponge-derived Streptomyces *** pyridapeptides F–H(1–3)are composed ofβ-hydroxyleucine,alanine,O-methylthreonine,hexahydropyridazine-3-carboxylic acid,5-hydroxytetrahydropyridazine-3-carboxylic acid,and(2.,3R,4E,6E)-2.amino-3–hydroxy-4,6-dienoic acid *** I(4)contains(2.,3R,4E,6E)-2.amino-3–hydroxy-8-methylnona-4,6-dienoic acid residue and a very rare glycose residue,*** structures were determined based on spectroscopic analysis and chemical *** G–I(2.4)have the 2.3,6-trideoxyhexose units glycosylated at theγ-OH-TPDA residue,displayed significant antiproliferative activity against four(PC9,MKN45,Hep G2.K562.or two(PC9,MKN45)human cancer cell lines.

关键词： Marine microorganism Streptomyces Cyclopeptide glycosides Pyridapeptides Antiproliferative activity

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重组猪肺表面活性蛋白A在昆虫杆状病毒表达系统的表达及体外抗PRRSV活性初步鉴定

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中国农业大学学报 2017年第4期22卷 101-108页

作者：李兰郑其升张元鹏李鹏成肖希龙付言峰侯继波江苏省农业科学院国家兽用生物制品工程技术研究中心南京210014 江苏省动物重要疫病与人兽共患病防控协同创新中心江苏扬州225009 中国农业大学动物医学院北京100193 江苏省农业科学院畜牧研究所南京210014

为研究重组猪肺表面活性蛋白A(RpSP-A)的抗病毒活性,采用Bac-to-Bac系统对RpSP-A蛋白进行表达。首先PCR扩增目的基因并将其克隆至pFastBac1转移载体获得pFast-SP-A,通过转化DH10Bac感受态细胞获得重组Bacmid,然后转染sf9细胞获得重组杆... 详细信息

为研究重组猪肺表面活性蛋白A(RpSP-A)的抗病毒活性,采用Bac-to-Bac系统对RpSP-A蛋白进行表达。首先PCR扩增目的基因并将其克隆至pFastBac1转移载体获得pFast-SP-A,通过转化DH10Bac感受态细胞获得重组Bacmid,然后转染sf9细胞获得重组杆状病毒rBV-SP-A,在sf9细胞上进行目的蛋白的表达,经镍柱纯化、脱盐柱处理后,采用蚀斑减少方法评价RpSP-A对PRRSV感染Marc-145细胞的抑制作用。结果显示RpSP-A在sf9细胞中得到正确表达,并且能够降低PRRSV在Marc-145细胞上的感染,补加Ca^(2.)时30μg/mL RpSP-A抑制率高达77%,15μg/mL RpSP-A抑制率为43%,未补加Ca^(2.)时RpSP-A没有表现出抑制作用。上述结果表明利用Bac-to-Bac系统可以稳定获得大量具有抗PRRSV作用的可溶性RpSP-A。

关键词：猪表面活性蛋白A 杆状病毒表达猪繁殖与呼吸综合征病毒抗病毒活性

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Early Ordovician-Middle Silurian Subduction-Closure of the Proto-Tethys Ocean:Evidence from the Qiaerlong Pluton at the Northwestern Margin of the West Kunlun Orogenic Belt,NW China

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Journal of Earth Science 2024年第2期35卷 430-448页

作者： Jinhong Xu Zhengwei Zhang Chengquan Wu Taiyi Luo Weiguang Zhu Xiyao Li Ziru Jin pengcheng Hu State Key Laboratory of Ore Deposit Geochemistry Institute of GeochemistryChinese Academy of SciencesGuiyang550018China University of Chinese Academy of Sciences Beijing100049China

Early Paleozoic magmatism in the West Kunlun Orogenic Belt(WKOB)preserves important information about the tectonic evolution of the Proto-Tethys *** paper reports whole-rock compositions,zircon and apatite U-Pb dating,and zircon Hf isotopes for the Qiaerlong Pluton(QEL)at the northwestern margin of WKOB,with the aim of elucidating the petrogenesis of the pluton and shedding insights into the subduction-collision process of this oceanic *** QEL is mainly composed of Ordovician quartz monzodiorite(479±3 Ma),quartz monzonite(467–472.Ma),and syenogranite(463±4 Ma),and is intruded by Middle Silurian peraluminous granite(42.±2. Ma)and diabase(42.±4 Ma).Zirconε_(Hf)(t)values reveal that quartz monzodiorites(+2.1 to+9.9)and quartz monzonites(+0.6 to+6.8)were derived from a mixed source of juvenile crust and older lower crust,and syenogranites(−5.6 to+4.5)and peraluminous granites(−2.9 to+2.0)were generated from a mixed source of lower crust and upper crust;diabases had zirconε_(Hf)(t)values ranging from−0.3 to+4.1,and contained 463±5 Ma captured zircon and 1048±39 Ma inherited zircon,indicating they originated from enriched lithospheric mantle and were contaminated by crustal *** Ordovician granitoids are enriched in LILEs and light rare-earth elements,and depleted in HFSEs with negative Nb,Ta,P,and Ti anomalies,suggesting that they formed in a subduction *** Silurian peraluminous granites have the characteristics of leucogranites with high SiO_(2.contents(74.92.wt.%–75.88 wt.%)and distinctly negative Eu anomalies(δEu=0.03–0.14),indicating that they belong to highly fractionated granite and were formed in a post-collision extension *** analysis of these results with other Early Paleozoic magmas reveals that the Proto-Tethys ocean closed before the Middle Silurian and its southward subduction resulted in the formation of QEL.

关键词： subduction-closure Qiaerlong Pluton West Kunlun Orogen Proto-Tethys Ocean tectonics geochemistry

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Continuous synthesis of N,N-dicyanoethylaniline in microreactors:Reaction kinetics and process intensification

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Chinese Journal of Chemical Engineering 2024年第8期72卷 95-105页

作者： pengcheng Lu Yaoyao Li Jianjun Zhang Yuchao Zhao Qingqiang Wang Ying Chen Nan Jin Xiugang Yu Shandong Provincial Key Laboratory of Chemical Engineering and Process College of Chemistry and Chemical EngineeringYantai UniversityYantai 264005China Shandong ANOKY Chemical Technology Research Co. Ltd.Yantai 265601China Yantai Guobang Chemical Machinery Technology Co. Ltd.Yantai 264000China

Cyanoethylation of phenylamine is one of the important steps for the production of dicyanoethyl-based disperse ***,the exothermic nature of this reaction and the inherent instability of intermittent dynamic operation pose challenges in achieving both high safety and reaction *** this study,a continuous cyanoethylation of phenylamine for synthesizing N,N-dicyanoethylaniline in a microreactor system has been *** optimizing the reaction conditions,the reaction time was significantly reduced from over 2.h in batch operation to approximately 14 min in the microreactor,while high conversion and selectivity were *** on the reaction network constructed,the reaction kinetics was established,and the kinetic parameters were then *** findings provide valuable insights into a controllable cyanoethylation reaction,which would be helpful for the design of efficient processes and optimization of reactors.

关键词： Cyanoethylation Microreactor Kinetics N,N-dicyanoethylaniline Optimization Safety

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Review of China's Energy Policy in 2.2.

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China Oil & Gas 2024年第1期31卷 14-21页

作者： Zhang pengcheng CNPC Economics and Technology Research Institute

In 2.2.,China's energy policy primarily focused on deepening systemic and institutional reforms,enhancing energy security capabilities,strengthening energy conservation and carbon reduction,and improving the standard *** has laid the foundation for China's policy direction,which is predicated on ensuring energy security,centered on economic construction,and aimed at achieving the carbon peak and carbon neutrality goals on *** the current key tasks,China has accelerated the construction of a big unified electricity market,vigorously promoted upgrading industries for low-carbon,high-end,and intelligent development,and established carbon markets and standard systems aligned with international practices,achieving substantial progress.

关键词： policy deepening unified

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Mitochondrial-Oriented Injectable Hydrogel Microspheres Maintain Homeostasis of Chondrocyte Metabolism to Promote Subcellular Therapy in Osteoarthritis

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Research 2024年第3期7卷 775-790页

作者： Li Chen Jianye Yang Zhengwei Cai Yanran Huang pengcheng Xiao Hong Chen Xiaoji Luo Wei Huang Wenguo Cui Ning Hu Department of Orthopedics The First Affiliated Hospital of Chongqing Medical UniversityOrthopedic Laboratory of Chongqing Medical UniversityChongqing 400016China Department of Orthopaedics Shanghai Key Laboratory for Prevention and Treatment of Bone and Joint DiseasesShanghai Institute of Traumatology and OrthopaedicsRuijin HospitalShanghai Jiao Tong University School of Medicine197 Ruijin 2nd RoadShanghai 200025China.

Subcellular mitochondria serve as sensors for energy metabolism and redox balance, and the dynamic regulation of functional and dysfunctional mitochondria plays a crucial role in determining cells' fate. Selective removal of dysfunctional mitochondria at the subcellular level can provide chondrocytes with energy to prevent degeneration, thereby treating osteoarthritis. Herein, to achieve an ideal subcellular therapy, cartilage affinity peptide (WYRGRL)-decorated liposomes loaded with mitophagy activator (urolithin A) were integrated into hyaluronic acid methacrylate hydrogel microspheres through microfluidic technology, named HM@WY-Lip/UA, that could efficiently target chondrocytes and selectively remove subcellular dysfunctional mitochondria. As a result, this system demonstrated an advantage in mitochondria function restoration, reactive oxygen species scavenging, cell survival rescue, and chondrocyte homeostasis maintenance through increasing mitophagy. In a rat post-traumatic osteoarthritis model, the intra-articular injection of HM@WY-Lip/UA ameliorated cartilage matrix degradation, osteophyte formation, and subchondral bone sclerosis at 8 weeks. Overall, this study indicated that HM@WY-Lip/UA provided a protective effect on cartilage degeneration in an efficacious and clinically relevant manner, and a mitochondrial-oriented strategy has great potential in the subcellular therapy of osteoarthritis.

关键词： spheres remove thereby

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ccdc141 is required for left-right axis development by regulating cilia formation in the Kupffer's vesicle of zebrafish

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Journal of Genetics and Genomics 2024年第9期51卷 934-946页

作者： pengcheng Wang Wenxiang Shi Sijie Liu Yunjing Shi Xuechao Jiang Fen Li Sun Chen Kun Sun Rang Xu Department of Pediatric Cardiology Xinhua HospitalShanghai Jiao Tong University School of MedicineShanghai 200092China Department of Cardiovascular Medicine Heart Failure CenterRuijin HospitalRuijin Hospital Lu Wan BranchShanghai Jiao Tong University School of MedicineShanghai 200025China Scientific Research Center Xinhua HospitalShanghai Jiao Tong University School of MedicineShanghai 200092China Department of Pediatric Cardiology Shanghai Children's Medical CenterShanghai Jiao Tong University School of MedicineShanghai 200127China

Laterality is a crucial physiological process intricately linked to the cilium-centrosome complex during embryo *** in the process can result in severe organ ***-coil domain containing 141(CCDC141)has been previously known as a centrosome-related gene,but its role in left-right(LR)asymmetry has not been *** this study,we utilize the zebrafish model and human exome analysis to elucidate the function of ccdc141 in laterality *** knockdown of ccdc141 in zebrafish disrupts early LR signaling pathways,cilia function,and Kupffer's vesicle *** ccdc141-knockdown embryos exhibiting aberrant LR patterns,ccdc141-null mutants show no apparent abnormality,suggesting a genetic compensation response *** parallel,we observe a marked reduction inα-tubulin acetylation levels in the ccdc141 *** treatment with histone deacetylase(HDAC)inhibitors,particularly the HDAC6 inhibitor,rescues the ccdc141 crispant ***,exome analysis of 70 patients with laterality defects reveals an increased burden of CCDC141 mutations,with in-vivo studies verifying the pathogenicity of the patient mutation *** findings highlight the critical role of ccdc141 in ciliogenesis and demonstrate that CCDC141 mutations lead to abnormal LR patterns,identifying it as a candidate gene for laterality defects.

关键词： Left-right axis Cilia WES Laterality defects Zebrafish CCDC141

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