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Genome-wide identification and expression profiling of photosystem II(PsbX)gene family in upland cotton(Gossypium hirsutum L.)

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Journal of Cotton Research 2024年第1期7卷 1-14页

作者： RAZA Irum parveen abida AHMAD Adeel HU Daowu PAN Zhaoe ALI Imran DU Xiongming Institute of Cotton Research Chinese Academy of Agricultural SciencesNational Key Laboratory of Cotton Bio-Breeding and Integrated UtilizationAnyangHenan 455000China Department of Biotechnology and Genetic Engineering Kohat University of Science and TechnologyKohatPakistan Department of Botany Kohat University of Science and TechnologyKohatPakistan.

Background Photosystem II(PSII)constitutes an intricate assembly of protein pigments,featuring extrinsic and intrinsic polypeptides within the photosynthetic *** low-molecular-weight transmembrane protein PsbX has been identified in PSII,which is associated with the oxygen-evolving *** expression of PsbX gene protein is regulated by ***’s central role involves the regulation of PSII,facilitating the binding of quinone molecules to the Qb(PsbA)site,and it additionally plays a crucial role in optimizing the efficiency of *** these insights,a comprehensive understanding of the PsbX gene’s functions has remained *** In this study,we identified ten PsbX genes in Gossypium hirsutum *** phylogenetic analysis results showed that 40 genes from nine species were classified into one *** resulting sequence logos exhibited substantial conservation across the N and C terminals at multiple sites among all Gossypium ***,the ortholo-gous/paralogous,Ka/Ks ratio revealed that cotton PsbX genes subjected to positive as well as purifying selection pressure might lead to limited divergence,which resulted in the whole genome and segmental *** expression patterns of GhPsbX genes exhibited variations across specific tissues,as indicated by the ***,the expression of GhPsbX genes could potentially be regulated in response to salt,intense light,and drought ***,GhPsbX genes may play a significant role in the modulation of photosynthesis under adverse abiotic *** We examined the structure and function of PsbX gene family very first by using comparative genom-ics and systems biology approaches in *** seems that PsbX gene family plays a vital role during the growth and development of cotton under stress ***,the results of this study provide basic information to unveil the molecular and physiological function of PsbX genes of cotton plan

关键词： Photosystem Phylogenetic Synteny RNA seq Gene expression Orthologous

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Genome-wide identification and expression profiling of photosystem Ⅱ(PsbX) gene family in upland cotton(Gossypium hirsutum L)

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Journal of Cotton Research 2024年第4期 421页

作者： RAZA Irum parveen abida AHMAD Adeel HU Daowu PAN Zhaoe ALI Imran DU Xiongming Institute of Cotton Research Chinese Academy of Agricultural SciencesNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization Department of Biotechnology and Genetic Engineering Kohat University of Science and Technology Department of Botany Kohat University of Science and Technology

Background Photosystem Ⅱ(PSⅡ) constitutes an intricate assembly of protein pigments,featuring extrinsic and intrinsic polypeptides within the photosynthetic *** low-molecular-weight transmembrane protein PsbX has been identified in PSⅡ,which is associated with the oxygen-evolving *** expression of PsbX gene protein is regulated by ***'s central role involves the regulation of PSⅡ,facilitating the binding of quinone molecules to the Qb(PsbA) site,and it additionally plays a crucial role in optimizing the efficiency of *** these insights,a comprehensive understanding of the PsbX gene's functions has remained *** In this study,we identified ten PsbX genes in Gossypium hirsutum *** phylogenetic analysis results showed that 40 genes from nine species were classified into one *** resulting sequence logos exhibited substantial conservation across the N and C terminals at multiple sites among all Gossypium ***,the orthologous/paralogous,Ka/Ks ratio revealed that cotton PsbX genes subjected to positive as well as purifying selection pressure might lead to limited divergence,which resulted in the whole genome and segmental *** expression patterns of GhPsbX genes exhibited variations across specific tissues,as indicated by the ***,the expression of GhPsbX genes could potentially be regulated in response to salt,intense light,and drought ***,GhPsbX genes may play a significant role in the modulation of photosynthesis under adverse abiotic *** We examined the structure and function of PsbX gene family very first by using comparative genomics and systems biology approaches in *** seems that PsbX gene family plays a vital role during the growth and development of cotton under stress ***,the results of this study provide basic information to unveil the molecular and physiological function of PsbX genes of cotton plants.

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