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A novel method for clustering cellular data to improve classification

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Neural Regeneration Research 2025年第9期20卷 2697-2705页

作者： Diek w.wheeler Giorgio A.Ascoli Center for Neural Informatics Structures&PlasticityKrasnow Institute for Advanced Study Bioengineering Department Volgenau School of Engineering George Mason University FairfaxVAUSA

Many fields,such as neuroscience,are experiencing the vast prolife ration of cellular data,underscoring the need fo r organizing and interpreting large datasets.A popular approach partitions data into manageable subsets via hierarchical clustering,but objective methods to determine the appropriate classification granularity are *** recently introduced a technique to systematically identify when to stop subdividing clusters based on the fundamental principle that cells must differ more between than within *** we present the corresponding protocol to classify cellular datasets by combining datadriven unsupervised hierarchical clustering with statistical *** general-purpose functions are applicable to any cellular dataset that can be organized as two-dimensional matrices of numerical values,including molecula r,physiological,and anatomical *** demonstrate the protocol using cellular data from the Janelia MouseLight project to chara cterize morphological aspects of neurons.

关键词： cellular data clustering dendrogram data classification Levene's one-tailed statistical test unsupervised hierarchical clustering

Genistein:a possible solution for the treatment of Alzheimer’s disease

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Neural Regeneration Research 2025年第10期20卷 2903-2905页

作者： Karolina Pierzynowska Bartosz Karaszewski Grzegorz węgrzyn Department of Molecular Biology University of GdanskGdanskPoland Gdansk Polandand Department of Adult NeurologyFaculty of MedicineMedical University of GdanskGdanskPoland

Neurodegenerative diseases are defined as disorders resulting from the slow and progressive loss of function and eventual death of neural cells that result from the primary pathology of nervous *** can lead to severe nervous system dysfunction,eventually affecting multiple organs and *** hundred neurodegenerative diseases have been described,and owing to their prevalence,severity.

关键词： organs Alzheimer death

Glia-to-neuron reprogramming to the rescue?

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Neural Regeneration Research 2025年第5期20卷 1395-1396页

作者： Jack w.Hickmott Cindi M.Morshead Department of Surgery University of TorontoTorontoONCanada Donnelly Centre for Cellular and Biomolecular Research TorontoONCanada Institute of Biomedical Engineering University of TorontoTorontoONCanada The KITE Research Institute Toronto Rehabilitation InstituteUniversity Health NetworkTorontoONCanada

Over the last two decades,the dogma that cell fate is immutable has been increasingly challenged,with important implications for regenerative *** brea kth rough discovery that induced pluripotent stem cells could be generated from adult mouse fibroblasts is powerful proof that cell fate can be *** exciting extension of the discovery of cell fate impermanence is the direct cellular reprogram ming hypothesis-that terminally differentiated cells can be reprogrammed into other adult cell fates without first passing through a stem cell state.

关键词： programming passing proof

Dynamic modeling of a three-dimensional braided composite thin plate considering braiding directions

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Applied Mathematics and Mechanics(English Edition) 2025年第1期46卷 123-138页

作者： Chentong GAO Huiyu SUN Jianping GU w.M.HUANG College of Aerospace Engineering Nanjing University of Aeronautics and Astronautics School of Mechanical and Aerospace Engineering Nanyang Technological University Jiangsu Key Laboratory of Advanced Structural Materials and Application Technology School of Materials Science and EngineeringNanjing Institute of Technology

Currently, there are a limited number of dynamic models available for braided composite plates with large overall motions, despite the incorporation of three-dimensional(3D) braided composites into rotating blade components. In this paper, a dynamic model of 3D 4-directional braided composite thin plates considering braiding directions is established. Based on Kirchhoff's plate assumptions, the displacement variables of the plate are expressed. By incorporating the braiding directions into the constitutive equation of the braided composites, the dynamic model of the plate considering braiding directions is obtained. The effects of the speeds, braiding directions, and braided angles on the responses of the plate with fixed-axis rotation and translational motion, respectively, are investigated. This paper presents a dynamic theory for calculating the deformation of 3D braided composite structures undergoing both translational and rotational motions. It also provides a simulation method for investigating the dynamic behavior of non-isotropic material plates in various applications.

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Geochemistry of an Alaskan-type mafic-ultramafic complex in Eastern Desert, Egypt:New insights and constraints on the Neoproterozoic island arc magmatism

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Geoscience Frontiers 2019年第3期10卷 941-955页

作者： Shehta E.Abdallah Shehata Ali Mohamed A.obeid Geology Department Faculty of Science Zagazig University Geology Department Faculty of Science Minia University Geology Department Faculty of Science Fayoum University Faculty of Petroleum and Mining Sciences Alexandria University (Matrouh Branch)

Mikbi intrusion(MI) is a part of the Neoproterozoic Nubian Shield located along the NE-Sw trending major fracture zones prevailing southern Eastern Desert of Egypt. In this study, we present for the first time detailed mineralogical and bulk-rock geochemical data to infer some constraints on the parental magma genesis and to understand the tectonic processes contributed to MI formation. Lithologically, it is composed of fresh peridotite, clinopyroxenite, hornblendite, anorthosite, gabbronorite, pyroxene amphibole gabbro, amphibole gabbro and diorite. All rocks have low Th/La ratios(mostly w very low concentrations of Nb, Ta, Zr and Hf together with sub-chondritic ratios of Nb/Ta(2-15) and Zr/Hf(19-35),suggesting that their mantle source was depleted by earlier melting extraction event. The oxygen fugacity(logfO_2) estimated from diorite biotite is around the nickel-nickel oxide buffer(NNO) indicating crystallization from a relatively oxidized magma. Amphiboles in the studied mafic-ultramafic rocks indicate relative oxygen fugacity(i.e. ΔNNO; nickel-nickel oxide) of 0.28-3 and were in equilibrium mostly with 3.77-8.24 wt.% H_2 O_(melt)(i.e. water content in the melt), consistent with the typical values of subduction-related magmas. Moreover, pressure estimates(0.53-6.79 kbar) indicate polybaric crystallization and suggest that the magma chamber(s) was located at relatively shallow crustal levels. The enrichment in LILE(e.g., Cs, Ba, K and Sr) and the depletion in HFSE(e.g., Th and Nb) relative to primitive mantle are consistent with island arc signature. The olivine, pyroxene and amphibole compositions also reflect arc affinity. These inferences suggest that their primary magma was derived from partial melting of a mantle source that formerly metasomatized in a subduction zone setting. Clinopyroxene and bulkrock data are consistent with orogenic tholeiitic affinity. Conse

关键词： Alaskan-type complex Neoproterozoic Arc magmatism Eastern desert Egypt

Human induced pluripotent stem cell-derived therapies for regeneration after central nervous system injury

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Neural Regeneration Research 2025年第11期20卷 3063-3075页

作者： Stephen Vidman Yee Hang Ethan Ma Nolan Fullenkamp Giles w.Plant Department of Neuroscience Ohio State UniversityColumbusOHUSA

In recent years,the progression of stem cell therapies has shown great promise in advancing the nascent field of regenerative *** the non-regenerative nature of the mature central nervous system,the concept that“blank”cells could be reprogrammed and functionally integrated into host neural networks remained *** work has also demonstrated the ability of such cells to stimulate intrinsic growth programs in post-mitotic cells,such as *** embryonic stem cells demonstrated great potential in treating central nervous system pathologies,ethical and technical concerns *** barriers,along with the clear necessity for this type of treatment,ultimately prompted the advent of induced pluripotent stem *** advantage of pluripotent cells in central nervous system regeneration is multifaceted,permitting differentiation into neural stem cells,neural progenitor cells,glia,and various neuronal *** precise spatiotemporal application of extrinsic growth factors in vitro,in addition to microenvironmental signaling in vivo,influences the efficiency of this directed *** the pluri-or multipotency of these cells is appealing,it also poses the risk of unregulated differentiation and teratoma *** of the neuroectodermal lineage,such as neuronal subpopulations and glia,have been explored with varying degrees of *** the risk of cancer or teratoma formation is greatly reduced,each subpopulation varies in effectiveness and is influenced by a myriad of factors,such as the timing of the transplant,pathology type,and the ratio of accompanying progenitor ***,successful transplantation requires innovative approaches to develop delivery vectors that can mitigate cell death and support ***,host immune responses to allogeneic grafts must be thoroughly characterized and further developed to reduce the need for *** to a clinical setting wi

关键词： axon regeneration central nervous system regeneration induced pluripotent stem cells neurotrauma regenerative medicine spinal cord injury stem cell therapy

Serpentinized Peridotites at the North Part of the wadi Allaqi District(Egypt): Implications for the Tectono-Magmatic Evolution of Fore-arc Crust

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Acta Geologica Sinica(English Edition) 2014年第5期88卷 1421-1436页

作者： Ahmed E.S.KHALIL Mohamed A.obeid Mokhles K.AZER Geological Sciences Department National Research CentreP.O.Box 12622-Dokki Cairo Egypt Geology Department Faculty of Science Fayoum UniversityP.O.Box 63514- Fayoum Egypt

The Neoproterozoic Allaqi-Heiani suture （800-700 Ma） in the south Eastern Desert of Egypt is the northernmost linear ophiolitic belt that defines an arc-arc suture in the Arabian- Nubian shield （ANS）. The Neoproterozoic serpentinized peridotites represent a distinct lithology of dismembered ophiolites along the Allaqi-Heiani suture zone. The alteration of peridotites varies, some contain relicts of primary minerals （Cr-spinel and olivine） and others are extremely altered, especially along thrusts and shear zones, with development of talc, talc-carbonate and quartz-carbonate. The fresh cores of the chromian spinels are rimmed by ferritchromite and Cr- magnetite. The fresh chromian spinels have high Cr# （0.62 to 0.79）, while Mg# shows wider variation （0.35-0.59）. High Cr# in the relict chromian spinels and Fo content in the primary olivines indicate that they are residual peridotites after extensive partial melting. The studied ophiolitic upper mantle peridotites are highly depleted and most probably underwent high degrees of partial melting at a supra-subduction zone setting. They can be produced by up to -20%-22% dynamic melting of a primitive mantle source. The mineralogical and geochemical features of the studied rocks reflect that the mantle peridotites of the north part of the wadi Allaqi district are similar to the fore-arc peridotites of a supra-subduction zone.

关键词： Neoproterozoic serpentinite Arabian-Nubian Shield Egypt Chromian spinel,olivine fore-arc

The Numerical Simulation of Nanofluid Flow in Complex Channels with Flexible all

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Frontiers in Heat and Mass Transfer 2023年第1期21卷 293-315页

作者： Amal A.Harbood Hameed K.Hamzah Hatem H.obeid Mechanical Engineering Department Babylon UniversityHillah CityIraq

The current work seeks to examine numerical heat transfer by using a complicated channel with a trapezoid shape hanging in the *** channel demonstrates two-dimensional laminar flow,forced convective flow,and incompressible *** explore the behavior of heat transfer in complex channels,several parameters,such as the constant Prandtl number(Pr=6.9),volume fraction(ϕ)equal to(0.02 to 0.04),Cauchy number(Ca)equal to(10-4 to 10-8),and Reynolds number equal to(60 to 160)were *** the complex channel,different elastic walls are used in different locations,with case A being devoid of an elastic wall,cases B and C each having three elastic walls before and after the trapezoid shape,respectively,and case D having six elastic *** geometry of a complicated channel with varying L2/H2 and B/H2 ratios is *** trouble was solved using the FEM with the ALE *** results showed that the best case with an elastic wall is reached for B/H2=0.8 and L2/H2=*** compared to the channel without a flexible wall in case A,the highest reading for Nusselt was recorded at case C with a percentage of 34.5 percent,followed by case B(31.4 percent)and then case D(21.5 percent).It also has the highest Nusselt number reading at Ca=10-4 and Re=160,or about 6.4 when compared to Ca=10-5 and Ca=*** case A,�P increases as the Re grows;however,in cases B and C,the�P reduces as the Re increases,but in case D,the�P increases with increasing Re.

关键词： Complex channel flexible wall Al2O3-water nanofluid fluid-solid interaction

Geochemical characteristics and spectrometric prospecting in the muscovite-bearing pegmatites and granites, southeastern Aswan, Egypt

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Chinese Journal Of Geochemistry 2008年第1期27卷 9-20页

作者： Gehad M. Saleh Mohamed M. El Galy Mohamed A. obeid Nuclear Materials Authority P.O.Box: 530 El Maadi Cairo Egypt Geology Depart. Faculty of Science El Fayoum University Egypt

Rare metal mineralization of Sn, Nb-Ta and w is encountered in the Gebel Dihmit area (GDA), south- eastern Aswan, Egypt. The mineralization is related to muscovite granites and their pegmatite derivatives. The peg- matites are divided into three types according to their main mineral assemblages: K-feldspar-muscovite-tourmaline, K-feldspar-albite-muscovite and albite-K-feldspar-lepidolite veins. Petrogenetic studies indicate that Sn and Nb-Ta mineralization extends from the late-magmatic stage to the pegmatite and hydrothermal stages of the (GDA) suite. The albite-K-feldspar-lepidolite granite is composed dominantly of albite, lepidolote, and quartz, with topaz, K-feldspar and amblygonite. The accessory minerals are zircon, monazite, pollucite, columbite-tantalite, microlite and Ta-rich cassiterite. Phenocrysts of quartz, topaz and K-feldspar contain abundant inclusions of albite laths and occasional lepidolite crystals along growth zones (snowball texture), indicating simultaneous crystallization from a subsolvus, residual magma. The origin of the pegmatites is attributed to extreme differentiation by fractional crystal- lization of a granitic magma. The economic potential for rare metals was evaluated in the geochemical discrimination diagrams. Accordingly, some of the pegmatites are not only highly differentiated in terms of alkalis, but also the promising targets for small-scale Ta and, to a less extent, Sn. The pegmatites also provide the first example of Fe-Mn and Nb-Ta fractionation in successive generations of granites to cassiterite-bearing pegmatites, which perfectly ex- hibit similar fractionation trends established for primary columbite-tantalite in the corresponding categories of peg- matites. Uranium and Th of magmatic origin are indicated by the presence of thorite and allanite, whereas evidence of hydrothermal mineralization is the alteration of rock- foring minerals such as feldspar and the formation of sec- ondary minerals such as uranophane..

关键词：地理特征光谱测定法白云母岩石