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Multi-environment BSA-seq using large F3 populations is able to achieve reliable QTL mapping with high power and resolution: An experimental demonstration in rice

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The Crop Journal 2024年第2期12卷 549-557页

作者： Yan Zheng Ei Ei Khine Khin Mar Thi Ei Ei Nyein Likun Huang Lihui Lin Xiaofang Xie Min Htay Wai Lin Khin Than Oo myat myat moe San San Aye Weiren Wu College of Life Sciences Fujian Agriculture and Forestry UniversityFuzhou 350002FujianChina Fujian Provincial Key Laboratory of Crop Breeding by Design Fujian Agriculture and Forestry UniversityFuzhou 350002FujianChina Key Laboratory of Genetics Breeding and Multiple Utilization of CropsMinistry of EducationFujian Agriculture and Forestry UniversityFuzhou 350002FujianChina Department of Botany Mawlamyine UniversityMon StateMawlamyineMyanmar Department of Botany Dagon UniversityNorth DagonYangonMyanmar

Bulked-segregant analysis by deep sequencing(BSA-seq) is a widely used method for mapping QTL(quantitative trait loci) due to its simplicity, speed, cost-effectiveness, and efficiency. However, the ability of BSA-seq to detect QTL is often limited by inappropriate experimental designs, as evidenced by numerous practical studies. Most BSA-seq studies have utilized small to medium-sized populations, with F2populations being the most common choice. Nevertheless, theoretical studies have shown that using a large population with an appropriate pool size can significantly enhance the power and resolution of QTL detection in BSA-seq, with F_(3)populations offering notable advantages over F2populations. To provide an experimental demonstration, we tested the power of BSA-seq to identify QTL controlling days from sowing to heading(DTH) in a 7200-plant rice F_(3)population in two environments, with a pool size of approximately 500. Each experiment identified 34 QTL, an order of magnitude greater than reported in most BSA-seq experiments, of which 23 were detected in both experiments, with 17 of these located near41 previously reported QTL and eight cloned genes known to control DTH in rice. These results indicate that QTL mapping by BSA-seq in large F_(3)populations and multi-environment experiments can achieve high power, resolution, and reliability.

关键词： BSA-seq QTL mapping Large F3 population Multi-environment experiment Cross-validation

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碰撞激活诱导的双势阱势能面可以实现9-甲基-8-氧鸟嘌呤-9-甲基腺嘌呤碱基对阳离子自由基的质子转移

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Chinese Journal of Chemical Physics 2024年第2期37卷 330-340,I0022-I0039,I0104页

作者： May myat moe 刘剑波美国纽约城市大学皇后学院化学与生物化学系纽约11367 美国纽约城市大学研究生院纽约10016

8-氧鸟嘌呤(OG)是最常见的核碱基氧化损伤,它在复制过程中可以用Hoogsteen的模式与腺嘌呤(A)错误配对.0G.A碱基对不仅可以诱发G·C→T·A的颠换突变,而且由于OG的电离势和氧化电位低于天然DNA碱基更容易受到电离辐射和单电子氧化的影响... 详细信息

8-氧鸟嘌呤(OG)是最常见的核碱基氧化损伤,它在复制过程中可以用Hoogsteen的模式与腺嘌呤(A)错误配对.0G.A碱基对不仅可以诱发G·C→T·A的颠换突变,而且由于OG的电离势和氧化电位低于天然DNA碱基更容易受到电离辐射和单电子氧化的影响,本文报道了[9MOG·9MA]^(·+)碱華对阳离子自由基的形成.和碰撞诱导解离,该碱基对利用9-甲基8-氧鸟嘌呤(9MOG)和9-甲基腺嘌呤(9MA)模拟相对应的核苷酸.实验通过电喷雾产生Cu(Ⅱ)碱基复合物继之以氧化分离产生[9MOG·9MA]^(·+),并使用导向离子束串级质谱仪检测[9MOG·9MA]^(·+)的碰撞诱导解离、通过测量在不同碰撞能量下的解离产物和反应截面,可以得出[9MOG-H]+[9MA+H]^(+)(主要解离通道)和9MOG^(·+)+9MA(次要通道)的0 K解离阈能分别为1.8和1.65 eV.使用密度泛函理论对[9MOG·9MA]^(·+)的结构计算发现其所有重要构象都发生了质子转移生成[9MOG-H]^(·)·[9MA+H]^(+).另一方面,9MOG^(·+)+9MA的解离通道却需要9MOG^(·+)9MA作为中间体.看似矛盾的结果可以用碰撞活化后反应势能面上出现的双重势阱和由此触发的激发态质子转移平衡([9MOG-H]^(·)·[9MA+H]^(+))^(*)→←(9MOG6(·+)·9MA)^(*)来解释.本文实验和理论研究揭示了这种生物学上重要的非规范碱基对如何在氧化和电离损伤时发生解离.

关键词：碱基对阳离子自由基碰撞诱导解离碱基对内质子转移反应势能面电喷雾电离质谱导向离子束散射

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Hypnotherapy for overweight and obese patients:A narrative review

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Journal of Integrative Medicine 2021年第1期19卷 1-5页

作者： Nurul Afiedia Roslim Aryati Ahmad Mardiana M ansor myat moe Thwe Aungc Farrahdilla Hamzah Haszalina Hassan Pei Lin Lua Faculty of Pharmacy Universiti Sultan Zainal Abidin(UniSZA)Kampus Besut22200 BesutTerengganuMalaysia Faculty of Health Science Universiti Sultan Zainal Abidin(UniSZA)Kampus Gong Badak21300 Kuala NerusTerengganuMalaysia Faculty of Medicine Universiti Sultan Zainal Abidin(UniSZA)Kampus Kota20400 Kuala TerengganuTerengganuMalaysia

Obesity and overweight problems are serious global health issues today and despite many efforts,the prevalence has continued to rise for ***,hypnotherapy has been gaining recognition as an effective treatment for obesity and overweight *** review compiles contemporary scientific research on the effectiveness of hypnotherapy for weight ***,Pub Med and EBSCO Host databases were applied in the *** search identified 119 articles,of which seven met the inclusion criteria.A total of 539 respondents(82.7%women and 17.3%men)between the ages of 17 and 67 years were represented in the seven *** studies incorporated lifestyle changes,such as changes of dietary habit and behavioral recommendations in the hypnotic *** results suggested that the use of hypnotherapy not only promoted weight reduction during the treatment period but also after treatment cessation,and in some cases,one to ten kilograms were lost during follow-up *** addition,one study even showed increased physical activity among the hypnotised *** use of hypnotherapy also improved respondents'eating behavior and quality of ***,a definitive conclusion could not be drawn due to several methodological flaws and the limited number of published studies in this ***,further well-designed studies are needed to substantiate the effectiveness of hypnotherapy for this modern-day health problem.

关键词： Hypnotherapy Mind-body interventions Obesity Overweight

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Development of Epstein-Barr virus-associated gastric cancer:Infection,inflammation,and oncogenesis

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World Journal of Gastroenterology 2022年第44期28卷 6249-6257页

作者： Hisashi Iizasa Andy Visi Kartika Sintayehu Fekadu Shunpei Okada Daichi Onomura Afifah Fatimah Azzahra Ahmad Wadi Mosammat Mahmuda Khatun Thin myat moe Jun Nishikawa Hironori Yoshiyama Department of Microbiology Shimane University Faculty of MedicineIzumo 693-8501ShimaneJapan Faculty of Medicine Muslim University of IndonesiaMakassar 90231Indonesia Department of Medical Microbiology and Parasitology Hawassa UniversityCollege of Medicine and Health ScienceHawassa 1560Ethiopia Faculty of Laboratory Science Yamaguchi University Graduate School of MedicineUbe 755-8505Japan

Epstein-Barr virus(EBV)-associated gastric cancer(EBVaGC)cells originate from a single-cell clone infected with ***,more than 95%of patients with gastric cancer have a history of Helicobacter pylori(***)infection,and *** is a major causative agent of gastric ***,it has long been argued that *** infection may affect the development of EBVaGC,a subtype of gastric *** gastrointestinal inflammation,a symptom of *** infection,is observed in the gastric mucosa of ***,it remains unclear whether *** infection is a cofactor for gastric carcinogenesis caused by EBV infection or whether *** and EBV infections act independently on gastric cancer *** has been reported that EBV infection assists in the oncogenesis of gastric cancer caused by *** *** contrast,several studies have reported that *** infection accelerates tumorigenesis initiated by EBV *** reviewing both clinical epidemiological and experimental data,we reorganized the role of *** and EBV infections in gastric cancer formation.

关键词： Helicobacter pylori Epstein-Barr virus Epstein-Barr virus-associated gastric cancer Coreceptor Inflammation Oncogenesis

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Phylogenetic Diversity and Evaluation the Effectiveness of Indigenous <i>Bradyrhizobium</i>Strains for Myanmar Black Gram (<i>Vigna mungo</i>L. Hepper) Cultivars

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American Journal of Plant Sciences 2020年第2期11卷 285-306页

作者： Khin myat Soe Aung Zaw Htwe Kyi moe Tomomi Abiko Takeo Yamakawa Biofertilizer Laboratory Land Use Division Department of Agriculture Ministry of Agriculture Livestock and Irrigation Yangon Myanmar Department of Agronomy Yezin Agricultural University Yezin Myanmar Laboratory of Agroecology Department of Bioresource Sciences Faculty of Agriculture Kyushu University Harumachi Kasuya-Machi Kasuya-Gun Fukuoka Japan Laboratory of Plant Nutrition Department of Bioresource and Bioenvironmental Sciences Faculty of Agriculture Kyushu University Motooka Nishi-Ku Fukuoka Japan

Black gram (Vigna mungo L. Hepper) is one of the main leguminous crops that provide chief source of food. Several Bradyrhizobium species are able to induce effective nodules in black gram cultivars. In the present study, we characterized forty isolates of indigenous black gram bradyrhizobia from Myanmar based on the sequence analysis of the bacterial 16S rRNA gene. The sequence analysis confirmed that all isolates were categorized and identified as the genus Bradyrhizobium and they were conspecific with B. elkanii, B. sp., B. liaoningense, B. japonicum and B. yunamingense. Almost all the collected isolates from major black gram growing regions of Nyaunglebin Bago Regio, Chaungzon Mon State, Sittwe Rakhine State, Danubyu Ayeyarwady Region and Launglon Tanintharyi Region were identified as B. liaoningense. At Danubyu Ayeyarwady Region and Pyinmanar Nay Pyi Taw Region, most of the strains were identified as B. japonicum. On the other hand, more or less all the isolates from Launglon Tanintharyi Region and Hpa-an Kayin State were related to B. elkanii. However, all B. sp. strains were found in Salingyi Sagaing Region black gram growing region. This is the first report describing Bradyrhizobium strains that were isolated from soil samples of major black gram growing areas in Myanmar. Evaluation of the effectiveness of Myanmar Bradyrhizobim strains isolated from soil samples of major black gram growing areas of Myanmar for plant growth and nitrogen fixation was studied in pot experiments with completely randomized design and three replicates. The nodule dry weight, shoot dry weight and acetylene reduction activity of the plant inoculated with Bradyrhizobium elkanii LauBG38 were significantly higher in ARA per plant, nodule and shoot dry weights than the other tested isolates in both Yezin-4 and Yezin-7 black gram varieties. We expect that Myanmar Bradyrhizobium elkanii LauBG38 will be able to use as Biofertilizer for black gram cultivars.

关键词： Black Gram Myanmar 16S rRNA Gene Bradyrhizobium Nitrogen Fixation

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