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Understanding divergent domestication traits from the whole-genome sequencing of swamp-and river-buffalo populations

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National Science Review 2020年第3期7卷 686-701页

作者： Xier Luo Yu Zhou Bing Zhang Yi Zhang Xiaobo Wang Tong Feng Zhipeng Li Kuiqing Cui Zhiqiang Wang Chan Luo Hui Li Yanfei Deng Fenghua Lu Jianlin Han Yongwang Miao Huaming Mao Xiaoyan Yi Cheng Ai Shigang Wu Alun Li Zhichao Wu Zijun Zhuo Do Da Giang Bikash Mitra mohammad farhad vahidi Shahid Mansoor Sahar Ahmed Al-Bayatti Eka Meutia Sari Neena Amatya Gorkhali Sigit Prastowo Laiba Shafique Guoyou Ye Qian Qian Baoshan Chen Deshun Shi Jue Ruan Qingyou Liu State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources Guangxi University CAS Key Laboratory of Genome Sciences and Information Beijing Institute of Genomics Chinese Academy of Sciences National Engineering Laboratory for Animal Breeding Key Laboratory of Animal Genetics Breeding and Reproduction of Ministry of Agriculture and Rural AffairsCollege of Animal Science and Technology China Agricultural University Guangdong Laboratory for Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic Resources Institute of Animal ScienceChinese Academy of Agricultural Sciences International Livestock Research Institute Faculty of Animal Science and Technology Yunnan Agricultural University Bacgiang Agriculture and Forestry University Cellular Immunology Lab Department of Zoology University of North Bengal Animal Biotechnology Department Agricultural Biotechnology Research Institute of Iran-North Region 11. National Institute for Biotechnology and Genetic Engineering 12. Animal Genetic Sources DepartmentDirectorate of Animal Resources Ministry of Agriculture 13. Department of Animal Science Faculty of Agriculture Syiah Kuala University 14. Animal Breeding DivisionNational Animal Science Research Institute Nepal Agriculture Research Council 15. Animal Science Department Universitas Sebelas Maret 16. International Rice Research Institute

Domesticated buffaloes have been integral to rice-paddy agro-ecosystems for millennia, yet relatively little is known about the buffalo genomics. Here, we sequenced and assembled reference genomes for both swamp and river buffaloes and we re-sequenced 230 individuals(132 swamp buffaloes and 98 river buffaloes)sampled from across Asia and Europe. Beyond the many actionable insights that our study revealed about the domestication, basic physiology and breeding of buffalo, we made the striking discovery that the divergent domestication traits between swamp and river buffaloes can be explained with recent selections of genes on social behavior, digestion metabolism, strengths and milk production.

关键词： Bubalus bubalis genome buffalo domestication re-sequencing traits

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Evaluation of suspended load transport rate using transport formulas and arti- ficial neural network models (Case study: Chelchay Catchment)

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Journal of Hydrodynamics 2013年第3期25卷 459-470页

作者： HADDADCHI Arman MOVAHEDI Neshat vahidi Elham OMID mohammad Hossein DEHGHANI Amir Ahmad Australian Rivers Institute Griffith University Nathan QLD 4111 Australia Department of Water Engineering Gorgan University of Agricultural Sciences and Natural Resources GorganIran Department of Irrigation and Reclamation Engineering University of Tehran Karaj Iran

Accurate estimation of sediment load or transport rate is very important to a wide range of water resources projects. This study was undertaken to determine the most appropriate model to predict suspended load in the Chelehay Watershed, northeast of Iran. In total, 59 data series were collected from four gravel bed-rivers and a sand bed river and two depth integrating suspended load samplers to evaluate nine suspended load formulas and feed forward backpropagation Artificial Neural Network （ANN） structures. Although the Chang formula with higher correlation coefficient （r = 0.69） and lower Root Mean Square Error （RMSE = 0.013） is the best suspended load predictor among the nine studied formulas, the ANN models significantly outperform traditional suspended load formulas and show their superior performance for all statistical parameters. Among different ANN structures two models inclu- ding 4 inputs, 4 hidden and one output neurons, and 4 inputs, 4 and one hidden and one output neurons provide the best simulation with the RMSE values of 0.0009 and 0.001, respectively.

关键词： sediment transport suspended load formulas Artificial Neural Network (ANN) river engineering

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The new soliton solutions for long and short-wave interaction system

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Journal of Ocean Engineering and Science 2022年第5期7卷 485-491页

作者： Sayyed Masood Zekavatmand Hadi Rezazadeh Mustafa Inc Javad vahidi mohammad Bagher Ghaemi Department of Applied Mathematics Iran University of Science and TechnologyTehranIran Faculty of Engineering Technology Amol University of Special Modern TechnologiesAmolIran Department of Computer Engineering Biruni UniversityIstanbulTurkey Firat University Science FacultyDepartment of MathematicsElazig 23119 Turkey Department of Medical Research China Medical University HospitalChina Medical UniversityTaichungTaiwan Department of Mathematical Sciences University of South AfricaPretoria 0002South Africa

The goal of this paper is to discover modern soliton solutions to long and short-wave interaction system by procedures called extended rational sine-cosine and rational sinh-cosh *** assume that the equation has a hypothetical soliton *** reorganizing the resulting equations,we obtain a system of *** Maple software,we get unknown coefficients in the system and writing them in the original equation,we obtain new solition solutions of the *** results show that the soliton solutions generated by the method for the long and short-wave interaction system are bright,kink type,bright periodic and dark *** provided 3-D figures to illustrate the *** results indicate that the method employed in this paper is superior than some other methods used in the literature to solve the same system equations.

关键词： Extended rational sine-cosine method Extended rational sinh-cosh method

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Antioxidant therapy in the management of acute,chronic and post-ERCP pancreatitis:A systematic review

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World Journal of Gastroenterology 2009年第36期15卷 4481-4490页

作者： Seyed Sajad Mohseni Salehi Monfared Hamed vahidi Amir Hossein Abdolghaffari Shekoufeh Nikfar mohammad Abdollahi Endocrinology and Metabolism Research Centre Tehran University of Medical Sciences Student Scientific Research Center Tehran University of Medical Science Pharmaceutical Sciences Research Center Tehran University of Medical Sciences Food&Drug Affairs and Food&Drug Laboratory Research Center Ministry of Health&Medical Education Faculty of Pharmacy and Pharmaceutical Sciences Research Center and Endocrinology&Metabolism Research CentreTehran University of Medical Sciences

We systematically reviewed the clinical trials which recruited antioxidants in the therapy of pancreatitis and evaluated whether antioxidants improve the outcome of patients with pancreatitis. Electronic bibliographic databases were searched for any studies which investigated the use of antioxidants in the management of acute pancreatitis （AP） or chronic pancreatitis （CP） and in the prevention of post-endoscopic retrograde cholangio-pancreatography （post-ERCP） pancreatitis （PEP） up to February 2009. Twenty-two randomized, placebo-controlled, clinical trials met our criteria and were included in the review. Except for a cocktail of antioxidants which showed improvement in outcomes in three different clinical trials, the results of the administration of other antioxidants in both AP and CP clinical trials were incongruent and ***, antioxidant therapy including allopurinol and N-acetylcysteine failed to prevent the onset of PEP in almost all trials. In conclusion, the present data do not support a benefit of antioxidant therapy alone or in combination with conventional therapy in the management of AP, CP or PER Further double blind, randomized, placebo-controlled clinical trials with large sample size need to be conducted.

关键词： Antioxidant Post-endoscopic retrogradecholangio-pancreatography pancreatitis Oxidative stress,Therapy Acute pancreatitis Chronic pancreatitis

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Preconcentration of Lead in Sugar Samples by Solid Phase Extraction and Its Determination by Flame Atomic Absorption Spectrometry

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American Journal of Analytical Chemistry 2011年第5期2卷 626-631页

作者： Saied Saeed Hosseiny Davarani Neda Sheijooni-Fumani Amin Morteza Najarian mohammad-Ali Tabatabaei Siavash vahidi 不详

A simple and sensitive solid phase extraction utilizing C18 filled cartridges incorporated with dithizone for preconcentration of lead and its subsequent determination by flame atomic absorption spectrometry (FAAS) was developed. Several parameters such as type, concentration and volume of eluent, pH of the sample solution, flow rate of extraction and volume of the sample were evaluated. The effect of a variety of ions on preconcentration and recovery was also investigated. At pH = 7.4 and 1.0 mol?L–1 HCl eluting them, lead ions were recovered quantitatively. The limit of detection (LOD) defined as 3Sbl was determined to be 8.1 μg L–1 for 500 mL of sample solution and eluted with 5 mL of 1.0 mol?L–1 HCl under optimum conditions. The accuracy and precision (RSD %) of the method were >90% and <10%, respectively. In the end, the proposed method was applied to a number of real sugar samples and the amount of lead was determined by spiking a known concentration of lead into the solution.

关键词： Solid Phase Extraction Lead Dithizone Flame Atomic Absorption Spectroscopy (FAAS) C18 Modified Cartridges

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Analgesic effect of paracetamol combined with low- dose morphine versus morphine alone on patients with biliary colic： a double blind, randomized controlled trial

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World Journal of Emergency Medicine 2016年第1期7卷 25-29页

作者： mohammad Reza Farnia Rasoul Babaei Farzaneh Shirani Mehdi Momeni Majid Hajimaghsoudi Elnaz vahidi Morteza Saeedi Emergency Medicine Department Imam Reza Hospital Kermanshah University of Medical Sciences Kermanshah Iran Emergency Medicine Department Shariati Hospital Tehran University of Medical Sciences Tehran Iran Emergency Medicine Research Center Emergency Medicine Department Shariati Hospital Tehran University of Medical Sciences Tehran Iran Emergency Medicine Department Shahid Dr Rahnemoon Hospital Shahid Sadoughi University of Medical Sciences Yazd Iran

BACKGROUND:Numerous drugs have been proposed to alleviate pain in patients with biliary colic,especially opioids,but still there is a tendency to use less narcotics because of their side effects and the unwillingness of some *** present study aimed to compare the analgesic effect of paracetamol combined with low-dose morphine versus morphine alone in patients with biliary ***:A randomized double-blind controlled trial was performed in 98 patients with biliary colic,recruited from two emergency departments from August 2012 to August *** patients were excluded and the remaining were randomized into two groups:group A received 0.05mg/kg morphine+1 000 mg paracetamol in 100 m L normal saline and group B received 0.1 mg/kg morphine+normal saline(100 m L)as *** scores were recorded using visual analogue scale(VAS)at baseline and 15 and 30 minutes after drug *** effects and the need for rescue medication(0.75 g/kg intravenous fentanyl)were also reported within 60 minutes of drug ***:Before the infusion,the mean±SD VAS scores were 8.73±1.57 in group A and8.53±1.99 in group *** 15 minutes after drug administration,the mean±SD VAS scores were2.16±1.90 in group A vs.2.51±1.86 in group B;mean difference was–0.35,and 95%CI–1.15 to 0.45(P=0.38).At 30 minutes the mean±SD VAS scores were 1.66±1.59 in group A vs.2.14±1.79 in group B;mean difference was–0.48,and 95%CI–1.20 to 0.24(P=0.19).The mean pain scores in the two groups at 15 and 30 minutes demonstrated no significant ***:Paracetamol combined with low-dose morphine may be effective for pain management in patients with biliary colic.

关键词： Biliary colic Morphine Paracetamol Visual analogue scale

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