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MARS and RNAcmap3:The Master Database of All Possible RNA Sequences Integrated with RNAcmap for RNA Homology Search

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Genomics, Proteomics & Bioinformatics 2024年第1期22卷 143-150页

作者： ke Chen Thomas Litfin Jaswinder Singh Jian Zhan Yaoqi Zhou Institute of Systems and Physical Biology Shenzhen Bay LaboratoryShenzhen 518055China Peking University Shenzhen Graduate School Shenzhen 518055China University of Science and Technology of China Hefei 230026China Suzhou Institute for Advanced Research University of Science and Technology of ChinaSuzhou 215123China Institute for Glycomics Griffith UniversitySouthportQLD 4222Australia

sequences found in the huge,integrated database of protein sequences(Big Fantastic Database).In contrast,the existing nucleotide databases were not consolidated to facilitate wider and deeper homology ***,we built a comprehensive database by incorporating the non-coding RNA(ncRNA)sequences from RNAcentral,the transcriptome assembly and metagenome assembly from metagenomics RAST(MG-RAST),the genomic sequences from Genome Warehouse(GWH),and the genomic sequences from MGnify,in addition to the nucleotide(nt)database and its subsets in National Center of Biotechnology Information(NCBI).The resulting Master database of All possible RNA sequences(MARS)is 20-fold larger than NCBI’s nt database or 60-fold larger than *** new dataset along with a new split-search strategy allows a substantial improvement in homology search over existing state-of-the-art *** also yields more accurate and more sensitive multiple sequence alignments(MSAs)than manually curated MSAs from Rfam for the majority of structured RNAs mapped to *** results indicate that MARS coupled with the fully automatic homology search tool RNAcmap will be useful for improved structural and functional inference of ncRNAs and RNA language models based on *** is accessible at https://***/omix/release/OMIX003037,and RNAcmap3 is accessible at http://***/download/.

关键词： RNA sequence database Homology search Secondary structure MARS RNAcmap3

In vivo 3-photon fluorescence microscopy of white matter in mouse brain excited at the 1700 nm window

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Journal of Innovative Optical Health Sciences 2024年第5期17卷 81-87页

作者： Jie Huang Jincheng Zhong Shen Tong Yingxian Zhang Ping Qiu ke Wang key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province College of Physics and Optoelectronic EngineeringShenzhen UniversityShenzhen 518060P.R.China School of medical Information and Engineering Xuzhou Medical UniversityXuzhou 221004P.R.China

White matter,a densely packed collection of myelinated axons,plays an essential part in neural *** high spatial resolution and deep penetration,multi-photon microscopy(MPM)is promising for white matter imaging in animal models in *** third harmonic generation(THG)signal can be generated from white matter,but the bottom part of the white matter layer generates weak THG due to its high ***,we demonstrate an in vivo labeling and imaging technology,capable of visualizing the white matter layer in the mouse brain,combining°uorescence labeling with MitoTracker Red and three-photon°uorescence(3PF)microscopy excited at the 1700 nm window.3PF signals are several times higher than THG signals,resulting in deeper imaging of the white matter layer with the *** results indicate that 3PF microscopy is a promising technology for white matter imaging in the deep brain in vivo.

关键词： Three-photon microscopy white matter myelin MitoTracker Red

Shear-thinning Catechol-modified Chitosan Hydrogel Loaded with Silver Nanoparticles for Endoscopic Submucosal Dissection

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Chinese Journal of Polymer Science 2024年第8期42卷 1147-1155页

作者： Wen-Jun Feng Yan-He Wu Xiao-Yang Liu Zheng-ke Wang MOE key Laboratory of Macromolecular Synthesis and Functionalization Department of Polymer Science and EngineeringZhejiang UniversityHangzhou 310058China

Shear-thinning hydrogels have emerged for endoscopic submucosal dissection,while wound intervention after surgery has rarely been ***,a catechol-modified chitosa n hydrogel with shear-thinning property was developed for simultaneously facilitating endoscopic submucosal dissection and postoperative wound *** from the shear-thinning and self-healing characteristics,the asprepared hydrogel showed easily endoscopic *** also performed very well as submucosal cushion,which could remain above 70%after injection for 120 min in ex vivo porcine large intestine *** fact,the cushion height of normal saline dramatically decreased to 46%of the initial height at 30 *** nanoparticles encapsulated into the network endowed the hydrogel with almost reached 100%antibacterial effect against *** and *** hemolysis ratio of the hydrogel was calculated to be as low as 0.8%.Combined with good hemocompatibility and cytocompatibility,the as-prepared hydrogel displayed much higher in vivo wound closu re and healing efficacy than normal *** results demonstrated the superiority of the shear-thinning chitosan hydrogel in facilitating clinical endoscopic submucosal dissection surgery.

关键词： Shear-thinning hydrogel Endoscopic mucosal dissection Wound healing Catechol-modified chitosan Silver nanoparticles

Analytical Modeling of Disaster-induced Load Loss for Preventive Allocation of Mobile Power Sources in Urban Power Networks

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Journal of Modern Power Systems and Clean Energy 2024年第4期12卷 1063-1073页

作者： Zhuorong Wang Qingxin Shi ke Fan Haiteng Han Wenxia Liu Fangxing Li School of Electrical&Electronics Engineering North China Electric Power UniversityBeijing 102206China College of Energy and Electrical Engineering Hohai UniversityNanjing 211100China The University of Tennessee Knoxville TN 37996USA

Continuous power supply of urban power networks(UPNs)is quite essential for the public security of a city be-cause the UPN acts as the basis for other infrastructure *** recent years,UPN is threatened by extreme weather *** accurate modeling of load loss risk under extreme weather is quite essential for the preventive action of ***-sidering the forecast intensity of a typhoon disaster,this paper proposes analytical modeling of disaster-induced load loss for preventive allocation of mobile power sources(MPSs)in ***,based on the topological structure and fragility model of overhead lines and substations,we establish an analytical load loss model of multi-voltage-level UPN to quantify the spatial dis-tribution of disaster-induced load loss at the substation ***,according to the projected load loss distribution,a pre-ventive allocation method of MPS is proposed,which makes the best use of MPS and dispatches the limited power supply to most vulnerable areas in the ***,the proposed meth-od is validated by the case study of a practical UPN in China.

关键词： Load loss fragility model pre-disaster allocation mobile power source urban power network

Optimization of ferroelectricity and endurance of hafnium zirconium oxide thin films by controlling element inhomogeneity

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Journal of Advanced Ceramics 2024年第7期13卷 1023-1031页

作者： Fei Yan ke Cao Yang Chen Jiajia Liao Min Liao Yichun Zhou Shaanxi key Laboratory of High-Orbits-Electron Materials and Protection Technology for Aerospace School of Advanced Materials and NanotechnologyXidian UniversityXi’an 710126China Xi’an key Laboratory of Reconfigurable Chip and Materials School of Advanced Materials and NanotechnologyXidian UniversityXi’an 710126China Frontier Research Center of Thin Films and Coatings for Device Applications Academy of Advanced Interdisciplinary ResearchXidian UniversityXi’an 710126China

Ferroelectric thin films based on HfO_(2) have garnered increasing attention worldwide,primarily due to their remarkable compatibility with silicon and scalability,in contrast to traditional perovskite-structured ferroelectric ***,significant challenges remain in their widespread commercial utilization,particularly concerning their notable wake-up effect and limited *** address these challenges,we propose a novel strategy involving the inhomogeneous distribution of Hf/Zr elements within thin films and explore its effects on the ferroelectricity and endurance of Hf_(0.5)Zr_(0.5)O_(2) thin *** techniques such as grazing incidence X-ray diffraction,transmission electron microscopy,and piezoresponse force microscopy,we investigated the structural characteristics and domain switching behaviors of these *** experimental results indicate that the inhomogeneous distribution of Hf/Zr contributes to improving the frequency stability and endurance while maintaining a large remnant polarization in Hf_(0.5)Zr_(0.5)O_(2) ferroelectric thin *** adjusting the distribution of Zr/Hf within the Hf_(0.5)Zr_(0.5)O_(2) thin films,significant enhancements in the remnant polarization(2P_(r)>35μC/cm2)and endurance(>109)along with a reduced coercive voltage can be ***,the fabricated ferroelectric thin films also exhibit high dielectric tunability(≥26%)under a low operating voltage of 2.5 V,whether in the wake-up state or *** study offers a promising approach to optimize both the ferroelectricity and endurance of HfO_(2)-based thin films.

关键词： ferroelectric capacitors thin films ferroelectricity hafnium zirconium oxide

Numerical Simulation on Radon Retardation Behavior of Covering Floats in Radon-Containing Water

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Biomedical and Environmental Sciences 2024年第4期37卷 406-417页

作者： LIU Shu Yuan ZHANG Li YE Yong Jun DING Ku ke National Institute for Radiological Protection Chinese Center for Disease Control and PreventionBeijing 100088China Office for Public Health Management Chinese Center for Disease Control and PreventionBeijing 102206China key Discipline Laboratory for National Defense for Biotechnology in Uranium Mining and Hydrometallurgy University of South ChinaHengyang 421001HunanChina

Objective This study aimed to efficiently reduce the release of radon from water bodies to protect the *** Based on the sizes of the experimental setup and modular float,computational fluid dynamics(CFD)was used to assess the impact of the area coverage rate,immersion depth,diffusion coefficient,and radon transfer velocity at the gas–liquid interface on radon migration and exhalation of radon-containing *** on the numerical simulation results,an estimation model for the radon retardation rate was *** effectiveness of the CFD simulation was evaluated by comparing the experimental and simulated variation values of the radon retardation rate with the coverage area *** The effect of radon transfer velocity on radon retardation in water bodies was minor and insignificant according to the appropriate value;therefore,an estimation model of the radon retardation rate of the coverage of a radon-containing water body was constructed using the synergistic impacts of three factors:area coverage rate,immersion depth,and diffusion *** deviation between the experimental and simulated results wasmerical simulation conditions,an estimation model of the radon retardation rate of covering floats in water bodies under the synergistic effect of multiple factors was obtained,which provides a reference for designing covering floats for radon retardation in radoncontaining water.

关键词： Radon-containing water Radon retardation rate CFD Coverage experiment Optimized design

Design,modeling and experimental investigation of a novel solar sail with high area-to-mass ratios for efficient solar sailing

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Chinese Journal of Aeronautics 2024年第10期37卷 234-248页

作者： Zhongjing REN Chengyang LI ke WU Ziran WANG Haipeng WANG Peng YAN key Laboratory of High-efficiency and Clean mechanical Manufacture(Ministry of Education) School of Mechanical EngineeringShandong UniversityJinan 250061China China Manned Space Agency Beijing 100071China

Solar sailing is a promising propellant-free approach to propelling spacecraft in ***,the propelling efficiency of conventional solar sail spacecraft is limited by their areato-mass *** paper proposes a novel design of micro solar sails with area-to-mass ratios above 100 m2/kg for next-generation chip-scale *** thin films developed by Microelectromechanical Systems(meMS)technologies were patterned into grid microstructures,and theoretical analysis of a sail prototype was *** electro-thermal and thermo-mechanical models of the solar sail in geospace were established by taking effects of Joule heating,solar radiation,and thermal re-emission into consideration,enabling rapid prediction of its threedimensional(3-D)reconfiguration from the as-released two-dimensional(2-D)*** of the ChipSail’s acceleration arising from the sail’s morphing was also analytically *** and characterization of the sail prototype made of multiple Al/Ni50Ti50 bilayer beams were ***-situ SEM imaging of the sail prototype in vacuum chamber witnessed an active and continuous 3-D reconfiguration under Joule heating,and over 90deformation was detected by applying a DC voltage of 0.078 *** and experimental work on the solar sail with at least 10 times higher area-to-mass ratios than conventional ones will lay a solid foundation for efficient solar sailing.

关键词： Solar sails Solar sailing High area-to-mass ratios Solar radiation pressure ChipSail

Observation of ballistic-diffusive thermal transport in GaN transistors using thermoreflectance thermal imaging

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Rare metals 2024年第1期43卷 389-394页

作者： Zhi-ke Liu Yang Shen Han-Ling Li Bing-Yang Cao key Laboratory for Thermal Science and Power Engineering of Ministry of Education Department of Engineering MechanicsTsinghua UniversityBeijing 100084China

To develop effective thermal management strategies for gallium-nitride (GaN) transistors, it is essential to accurately predict the device junction temperature. Since the width of the heat generation in the devices is comparable to phonon mean free paths (MFPs) of GaN, phonon ballistic transport exists and can significantly affect the heat transport process.

关键词： temperature. transistors GaN

Layer-by-layer assembly of chitosan and carbon nanotube on cotton fabric for strain and temperature sensing

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Journal of Materials Science & Technology 2024年第6期173卷 114-120页

作者： Ye-Xin Zhang Yi-Dong Li An-ke Du Yuanpeng Wu Jian-Bing Zeng Chongqing key Laboratory of Soft-Matter Material Chemistry and Function Manufacturing School of Chemistry and Chemical EngineeringSouthwest UniversityChongqing 400715China Chongqing Academy of Science and Technology Chongqing 401123China School of New Energy and Materials State Key Laboratory of Oil and Gas Reservoir Geology and ExploitationSouthwest Petroleum UniversityChengdu 610500China

Layer-by-layer(LBL)assembly shows great potential in fabrication of flexible conductive cotton fabrics(FCCF)with carbon nanotubes(CNT)as conductive components but is limited because complicated chemical modification of CNT is usually ***,we reported a facile and eco-friendly LBL approach to fabricating FCCF by dipping in chitosan(CS)aqueous solution and poly(sodium 4-styrenesulfonate)(PSS)wrapped CNT aqueous dispersion *** FCCF with electrical conductivity higher than 30 S/m was achieved when 4 layers of CNT were coated on the cotton fabric(CF).The obtained FCCF possessed outstanding mechanical stability with electrical resistivity almost unchanged after exposure to 500 times mechanical abrasion and 500 circles of tape *** FCCF showed excellent strain sensing performance with high sensitivity(with a gauge factor up to 35.1)and a fast response time(70 ms).It can be used as a strain sensor to accurately detect various human deformations such as finger bending and joint *** FCCF could be used as a temperature sensor in that it exhibited stable and reproducible negative temperature sensing behavior in the temperature range of 30-100℃.

关键词： Flexible conductive cotton fabric Layer-by-layer Temperature sensing Strain sensing