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High throughput sequencing unravels tomato-pathogen interactions towards a sustainable plant breeding

Horticulture Research 2021年第1期8卷 2416-2427页

作者： maria doroteia Campos maria do rosario felix mariana Patanita Patrick Materatski Carla Varanda MED–Mediterranean Institute for Agriculture Environment and DevelopmentInstituto de Investigacao e Formaçao AvancadaUniversidade de EvoraPolo da MitraAp.947006-554 EvoraPortugal MED–Mediterranean Institute for Agriculture Environment and Development&Departamento de FitotecniaEscola de Ciencias e TecnologiaUniversidade de EvoraPolo da MitraAp.947006-554 EvoraPortugal

Tomato(Solanum lycopersicum)is one of the most economically important vegetables throughout the *** is one of the best studied cultivated dicotyledonous plants,often used as a model system for plant research into classical genetics,cytogenetics,molecular genetics,and molecular *** plants are affected by different pathogens such as viruses,viroids,fungi,oomycetes,bacteria,and nematodes,that reduce yield and affect product *** study of tomato as a plant-pathogen system helps to accelerate the discovery and understanding of the molecular mechanisms underlying disease resistance and offers the opportunity of improving the yield and quality of their edible *** use of functional genomics has contributed to this purpose through both traditional and recently developed techniques,that allow the identification of plant key functional genes in susceptible and resistant responses,and the understanding of the molecular basis of compatible interactions during pathogen ***-generation sequencing technologies(NGS),which produce massive quantities of sequencing data,have greatly accelerated research in biological sciences and offer great opportunities to better understand the molecular networks of plant–pathogen *** this review,we summarize important research that used high-throughput RNA-seq technology to obtain transcriptome changes in tomato plants in response to a wide range of pathogens such as viruses,fungi,bacteria,oomycetes,and *** findings will facilitate genetic engineering efforts to incorporate new sources of resistance in tomato for protection against pathogens and are of major importance for sustainable plant-disease management,namely the ones relying on the plant’s innate immune mechanisms in view of plant breeding.

关键词： breeding sustainable quantities

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The quest for a globally comprehensible Russula language

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Fungal Diversity 2019年第6期99卷 369-449页

作者： Slavomır Adamcik Brian Looney Miroslav Cabon Sona Jancovicova Katarina Adamcikova Peter G.Avis Magdalena Barajas Rajendra P.Bhatt Adriana Corrales Kanad Das felix Hampe Aniket Ghosh Genevieve Gates Ville Kalviainen Abdul Nasir Khalid Munazza Kiran Ruben De Lange Hyun Lee Young Woon Lim Alejandro Kong Cathrin Manz Clark Ovrebo Malka Saba Tero Taipale Annemieke Verbeken Komsit Wisitrassameewong Bart Buyck Institute of Botany Plant Science and Biodiversity CenterSlovak Academy of SciencesDubravska cesta 984523 BratislavaSlovakia Department of Biology Duke University130 Science DriveDurhamNC 27708-0338USA Department of Botany Faculty of Natural SciencesComeniusUniversity in BratislavaRevova 3981102 BratislavaSlovakia Department of Plant Pathology and Mycology Institute of Forest EcologySlovak Academy of Sciences ZvolenAkademicka 294901 NitraSlovakia Indiana University Northwest 3400 BroadwayMarram HallRoom 308GaryIN 46408USA Department of Botany&Microbiology H.N.B.Garhwal UniversityGarhwalSrinagar 246174UttarakhandIndia Programa de Biologia Facultad de Ciencias Naturales y MatematicasUniversidad del RosarioCr.24#63C-69BogotaD.C.Colombia A.J.C.Bose Indian Botanic Garden Botanical Survey of IndiaP.O.Botanic GardenHowrah 711103India Grafenroda Germany Tasmanian Institute of Agriculture Private Bag 98HobartTAS 7001Australia Helsinki Finland Department of Botany University of the PunjabQuaid-e-Azam CampusLahore 54590Pakistan Department of Biology Ghent UniversityK.L.Ledeganckstraat 359000 GhentBelgium School of Biological Sciences and Institute of Microbiology Seoul National UniversitySeoul 08826South Korea Centro de Investigaciones en Ciencias Biologicas Km.10.5 Carretera San Martin Texmelucan-TlaxcalaCP.90120IxtacuixtlaTlaxcalaMexico Department of Mycology Goethe University Frankfurt am MainBiologicumMax-von-Laue-Str.1360438 Frankfurt am MainGermany Department of Biology University of Central Oklahoma100.N.University DriveBox 89EdmondOK 73034USA Department of Plant Sciences Quaid-i-Azam UniversityIslamabad 45320Pakistan Koskenkylan Saha Finland Institut de Systematique Ecologie et Biodiversite(ISYEB)Museum national d’histoire naturelleCNRSSorbonne UniversiteEPHE57 rue CuvierCP 3975005 ParisFrance

Since 2007,the quality of Russula descriptions has improved and the use of molecular support for species delimitation and the number of published new species has ***,the description style is not consistent and has regional or author-specific *** recent publications still favour descriptions of spores compared to hymenium and pileipellis elements,and usually only the spore size is provided with statistical *** study proposes standards for descriptions of the microscopic structure of Russula species(Russulaceae,Agaricomycetes).We present the description template,the template measurements table,the specific terminology and the essential chemical *** proposed standards were tested by mycologists from 11 countries who met at the Russula Microscopy Workshop in *** of 26 species from 9 countries and four continents were prepared,among them ***,***,*** and *** are re-described and 15 species are introduced as new:***,***,***,***,***,***,***,***,***,***,***,***,***,***-pauli and *** descriptions for candidate new species are provided without a formal name *** comparison of species described in this study with available similar descriptions of related species suggests that microscopic characters from all parts of the basidiomata can be equally important for species recognition and they deserve the same treatment including number of measurements and *** majority of recent studies does not recognise differences between the pileus margin and centre,but more than one-third of the species described in this study show distinct differences between the pileus areas,emphasizing the importance to specify the origin of pileipellis *** study proved that there is frequently insufficient difference in the I

关键词： Morphology standards New species Phylogeny Species delimitation Taxonomy

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