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Notes for genera:basal clades of Fungi(including Aphelidiomycota,Basidiobolomycota,Blastocladiomycota,Calcarisporiellomycota,Caulochytriomycota,Chytridiomycota,Entomophthoromycota,Glomeromycota,Kickxellomycota,Monoblepharomycota,Mortierellomycota,Mucoromycota,Neocallimastigomycota,Olpidiomycota,Rozellomycota and Zoopagomycota)

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Fungal Diversity 2018年第5期92卷 43-129页

作者： Nalin N.Wijayawardene Julia Pawłowska Peter M.Letcher Paul M.Kirk Richard A.Humber Arthur Schüßler Marta Wrzosek Anna Muszewska Alicja Okrasińska Łukasz Istel Aleksandra Gęsiorska Paul Mungai Adebola Azeez Lateef Kunhiraman C.Rajeshkumar Rajshree V.Singh Renate Radek Grit Walther lysett wagner Christopher Walker D.Siril A.Wijesundara Moslem Papizadeh Somayeh Dolatabadi Belle D.Shenoy Yuri S.Tokarev Saisamorn Lumyong Kevin D.Hyde Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China Center of Excellence in Fungal Research and School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Molecular Phylogenetics and Evolution Institute of BotanyFaculty of BiologyBiological and Chemical Research CenterUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of Biological Sciences The University of AlabamaTuscaloosaAL 35487USA Royal Botanic Gardens KewRichmondSurrey TW93DSUK USDA-ARS Emerging Pests and Pathogens Research Robert W.Holley Center for Agriculture and HealthTower RoadIthacaNY 14853-2901USA Symbiosis and Plant-Microbe Association Research Laboratory SYMPLANTA GmbH&Co.KG64287 DarmstadtGermany Institute of Biochemistry and Biophysics Polish Academy of SciencesPawinskiego 5A02-106 WarsawPoland Ecological Monitoring Unit Biodiversity Research and Monitoring DivisionKenya Wildlife ServiceP.O.Box 40241Nairobi 00100Kenya Department of Plant Biology Faculty of Life SciencesUniversity of IlorinIlorinNigeria National Fungal Culture Collection of India(NFCCI) Biodiversity and Palaeobiology(Fungi)GroupAgharkar Research InstitutePuneMaharashtra 411004India Evolutionary Biology Institute for Biology/ZoologyFreie Universität Berlin14195 BerlinGermany National Reference Center for Invasive Mycoses(NRZMyk) Leibniz Institute for Natural Product Research and Infection Biology–Hans Knoell InstituteJenaGermany School of Agriculture and Environment Faculty of ScienceUniversity of Western Australia35 Stirling HighwayCrawleyWA 6009Australia Royal Botanic Garden Edinburgh 20A Inverleith RowEdinburgh EH35LRUK National Institute of Fundamental Studies Hantane RoadKandySri Lanka Department of Microbiology Pasteur Institute of IranTehranIran Faculty of Engineering Sabzevar University of New TechnologySabzevarIran CSIR-National Institute of Oceanography Regional

Compared to the higher fungi(Dikarya),taxonomic and evolutionary studies on the basal clades of fungi are fewer in number.Thus,the generic boundaries and higher ranks in the basal clades of fungi are poorly known.Recent DNA based taxonomic studies have provided reliable and accurate information.It is therefore necessary to compile all available information since basal clades genera lack updated checklists or outlines.Recently,Tedersoo et al.(MycoKeys 13:1–20,2016)accepted Aphelidiomycota and Rozellomycota in Fungal clade.Thus,we regard both these phyla as members in Kingdom Fungi.We accept 16 phyla in basal clades viz.Aphelidiomycota,Basidiobolomycota,Blastocladiomycota,Calcarisporiellomycota,Caulochytriomycota,Chytridiomycota,Entomophthoromycota,Glomeromycota,Kickxellomy-cota,Monoblepharomycota,Mortierellomycota,Mucoromycota,Neocallimastigomycota,Olpidiomycota,Rozellomycota and Zoopagomycota.Thus,611 genera in 153 families,43 orders and 18 classes are provided with details of classification,synonyms,life modes,distribution,recent literature and genomic data.Moreover,Catenariaceae Couch is proposed to be conserved,Cladochytriales Mozl.-Standr.is emended and the family Nephridiophagaceae is introduced.

关键词： Invalid genera Nephridiophagaceae fam.nov. Outline Phylogeny Validation

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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles

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Fungal Diversity 2020年第2期107卷 I0001-I0016页

作者： Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen Rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana Corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César Marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol Ina Timling Inga Hiiesalu Jane Oja John Y.Kupagme József Geml Julieta Alvarez-Manjarrez Kai Ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou lysett wagner M.Catherine Aime MaarjaÖpik María Isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle Cleary Milan C.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.Mendes-Alvarenga Roberto Garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena Saleh Rahimlou Samantha C.Karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-Kaarel Sepp Sunil Mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng Yang Tom May Torda Varga Wei Li Victor Rafael Matos Coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.Mikryukov Yongzhong Lu Yosuke Matsuda Yumiko Miyamoto Urm Institute of Ecology and Earth Sciences University of Tartu14A Ravila50411 TartuEstonia Natural History Museum University of Tartu46 Vanemuise Str51003 TartuEstonia Gothenburg Global Biodiversity Centre Box 46140530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgGothenburgSweden Department of Soil and Environment Swedish University of Agricultural SciencesBox 701475007 UppsalaSweden Department of Forest Mycology and Plant Pathology Swedish University of Agricultural SciencesBox 702675007 UppsalaSweden Section for Genetics and Evolutionary Biology(EvoGene) Department of BiosciencesUniversity of OsloP.O.Box 1066BlindernNO-0316 OsloNorway University of Hawaiʻi at Mānoa 3190 Maile WaySt.John 102HonoluluHIUSA Department of Biology University of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark Purdue University Northwest WestvilleIN 46391USA Institute of Microbiology Czech Academy of SciencesVidenska 108314220 Praha 4Czech Republic GLOBE Institute University of CopenhagenØster Farimagsgade 5KH7.2.321353 CopenhagenDenmark Dipartimento di Scienze della Vita e Biologia dei Sistemi Universitàdi TorinoViale Mattioli 2510125 TorinoItaly Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium Harvard University22 Divinity AveCambridgeMA 02138USA Blaihofstr.42 72074 TübingenGermany SYNLAB Estonia Veerenni 53aTallinn 11313Estonia Escuela de Tecnología Médica Universidad Santo TomásLos Carreras 753OsornoChile Centro de Genómica y Bioinformática Universidad MayorCamino La Pirámide 5750HuechurabaSantiagoChile Norwegian Institute for Nature Research(NINA) Sognsveien 680855 OsloNorway School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Evolutionary Biology Faculty of BiologyBiological and Chemical Research CentreUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of Botany Swedish Museum of

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.

关键词： Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing Community ecology

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