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High-precision parallel computing model of solute transport based on GPU acceleration

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Journal of Hydrodynamics 2024年第1期36卷 202-212页

作者： Shang-hong zhang Rong-qi zhang Wen-da Li xi-yan Yang Yang Zhou School of Water Resources and Hydropower Engineering North China Electric Power UniversityBeijing102206China Hubei Key Laboratory of Intelligent Yangtze and Hydroelectric Science China Yangtze Power Co.Ltd.Yichang443133China

The scenario simulation analysis of water environmental emergencies is very important for risk prevention and control,and emergency *** quickly and accurately simulate the transport and diffusion process of high-intensity pollutants during sudden environmental water pollution events,in this study,a high-precision pollution transport and diffusion model for unstructured grids based on Compute Unified Device Architecture(CUDA)is *** finite volume method of a total variation diminishing limiter with the Kong proposed r-factor is used to reduce numerical diffusion and oscillation errors in the simulation of pollutants under sharp concentration conditions,and graphics processing unit acceleration technology is used to improve computational *** advection diffusion process of the model is verified numerically using two benchmark cases,and the efficiency of the model is evaluated using an engineering *** results demonstrate that the model perform well in the simulation of material transport in the presence of sharp ***,it has high computational *** acceleration ratio is 46 times the single-thread acceleration effect of the original *** efficiency of the accelerated model meet the requirements of an engineering application,and the rapid early warning and assessment of water pollution accidents is achieved.

关键词： Pollution transport and diffusion model parallel computing Compute Unified Device Architecture(CUDA) pollution event

Molecular cloning and functional analysis of two calcium associated cuticular protein genes in Neocaridina denticulata sinensis

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Journal of Oceanology and Limnology 2024年第5期42卷 1659-1672页

作者： xi GAO Mengmeng DUAN Yuying SUN Jiquan zhang School of Life Sciences/Hebei Basic Science Center for Biotic Interaction Hebei UniversityBaoding 071002China Institute of Life Science and Green Development Hebei UniversityBaoding 071002China

The body surface of crustaceans is covered with a sturdy *** growth and development of crustaceans are realized through *** denticulata sinensis is a suitable candidate for crustacean scientific *** calcium-associated cuticular protein genes,named NdCAP-1 and NdCAP-2,were obtained from *** *** docking simulated the binding effect of both proteins and calcium ***-quantitative reverse transcription PCR results show that NdCAP-1 is expressed in D_(2-4) stage,NdCAP-2 expressed in D_(2-4) and A-B stages,and both were significantly expressed in the cephalothorax cuticle and ***,it was revealed that NdCAP-1 and NdCAP-2 are regulated by NdEcR-mediated 20 E signaling *** of NdCAP-1 and NdCAP-2 was observed to cause surface *** recombinant proteins(rNdCAP-1 and rNdCAP-2),obtained by prokaryotic expression,had calcium-binding and chitin-binding ability,inhibited formation of calcium carbonate *** results show that calcium-associated cuticular proteins play important roles in cuticle formation and calcification.

关键词： Neocaridina denticulata sinensis calcium-associated cuticular protein molting cycle RNAi calcium-binding ability

Distributed fiber optic sensors for tunnel monitoring:A state-of-the-art review

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Journal of Rock Mechanics and Geotechnical Engineering 2024年第9期16卷 3841-3863页

作者： Xuehui zhang Honghu Zhu xi Jiang Wout Broere Geo-Engineering Section Department of Geoscience and EngineeringDelft University of TechnologyDelft2628CNthe Netherlands School of Earth Sciences and Engineering Nanjing UniversityNanjing210023China Department of Civil and Environmental Engineering The Hong Kong Polytechnic UniversityKowloonHong KongChina

Distributed fiber optic sensors(DFOSs)possess the capability to measure strain and temperature variations over long distances,demonstrating outstanding potential for monitoring underground *** study presents a state-of-the-art review of the DFOS applications for monitoring and assessing the deformation behavior of typical tunnel infrastructure,including bored tunnels,conventional tunnels,as well as immersed and cut-and-cover *** systems based on Brillouin and Rayleigh scattering principles are both *** implementing DFOS monitoring,the fiber optic cable can be primarily installed along transverse and longitudinal directions to(1)measure distributed strains by continuously adhering the fiber to the structure’s surface or embedding it in the lining,or(2)measure point displacements by spot-anchoring it on the lining *** are four critical aspects of DFOS monitoring,including proper selection of the sensing fiber,selection of the measuring principle for the specific application,design of an effective sensor layout,and establishment of robust field sensor *** four issues are comprehensively discussed,and practical suggestions are provided for the implementation of DFOS in tunnel infrastructure monitoring.

关键词： Distributed fiber optic sensor(DFOS) Tunnel infrastructure Distributed strain sensing Point displacement monitoring Field instrumentation

Surface pollen and modern vegetation in Southern xinjiang,China

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Science China Earth Sciences 2024年第2期67卷 510-530页

作者： Yun zhang Lixin CHEN Yaoyao xi Zhaochen KONG xianguo QIAO State Key Laboratory of Black Soils Conservation and Utilization Northeast Institute of Geography and AgroecologyChinese Academy of SciencesChangchun130102China Institute of Botany Chinese Academy of SciencesBeijing100093China Key Laboratory of Cenozoic Geology and Environment Institute of Geology and GeophysicsChinese Academy of SciencesBeijing100029China University of Chinese Academy of Sciences Beijing100049China School of Geosciences and Resources China University of Geosciences(Beijing)Beijing100083China

The study of modern pollen,and vegetation can improve the accuracy of paleoenvironmental reconstruction based on fossil pollen data.A total of 188 pollen surface samples were collected from Southern xinjiang(34°00’–43°00’N,74°00’–94°00’E)in China,with an elevation range of 888–4530 *** pollen and vegetation were studied in the northern region of the Kunlun Mountains and the southern region of the Tianshan *** results showed that the surface pollen assemblages on the southern slope of the Tianshan Mountains(3530–1124 m)were divided into three pollen zones,namely,montane steppe,montane desert steppe,and montane *** zones were dominated by Artemisia,Chenopodiaceae,and Ephedra *** surface pollen assemblages in the eastern Pamir Plateau(4530–1287 m)could be divided into alpine meadow,montane desert steppe,and montane desert zones,which were predominantly characterized by Artemisia,Chenopodiaceae,and Asteraceae ***,the Southern Tarim Basin(3548–888 m)comprised montane desert steppe and montane desert zones,which was dominated by Artemisia and Chenopodiaceae *** geographic distribution of the surface pollen sites obtained using ArcGIS,the R-value,and Pearson correlation analyses indicated that the over-represented Picea and Pinus pollen were of external origin and were transported by wind,water(rivers),and ice(glacier movement).Over-representation of Ephedra and Nitraria pollen was mainly distributed in the montane desert and desert steppe zones,*** from Chenopodiaceae and Artemisia were over-represented and broadly distributed across Southern *** pollen was concentrated in areas with walnut trees,strongly indicating the presence of local parent *** to the Hybrid Singleparticle Lagrangian Integrated Trajectory model,more Pinus pollen was transported to the Pamir region by external airflows during spring and summer,resulting in its higher surface pollen *** elucidating t

关键词： Surface pollen Vegetation Distribution Picea Southern xinjiang

Benchmark experiment on slab^(238)U with D-T neutrons for validation of evaluated nuclear data

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Nuclear Science and Techniques 2024年第2期35卷 145-159页

作者： Yan-Yan Ding Yang-Bo Nie Yue zhang Zhi-Jie Hu Qi Zhao Huan-Yu zhang Kuo-Zhi Xu Shi-Yu zhang xin-Yi Pan Chang-lin Lan Jie Ren xi-Chao Ruan Key Laboratory of Nuclear Data China Institute of Atomic EnergyBeijing 102413China School of Nuclear Science and Technology Lanzhou UniversityLanzhou 730000China Institute of Fluid Physics China Academy of Engineering PhysicsMianyang 62100China

A benchmark experiment on^(238)U slab samples was conducted using a deuterium-tritium neutron source at the China Institute of Atomic *** leakage neutron spectra within energy levels of 0.8-16 MeV at 60°and 120°were measured using the time-of-flight *** samples were prepared as rectangular slabs with a 30 cm square base and thicknesses of 3,6,and 9 *** leakage neutron spectra were also calculated using the MCNP-4C program based on the latest evaluated files of^(238)U evaluated neutron data from CENDL-3.2,ENDF/B-Ⅷ.0,JENDL-5.0,and *** on the comparison,the deficiencies and improvements in^(238)U evaluated nuclear data were *** results showed the following.(1)The calculated results for CENDL-3.2 significantly overestimated the measurements in the energy interval of elastic scattering at 60°and 120°.(2)The calculated results of CENDL-3.2 overestimated the measurements in the energy interval of inelastic scattering at 120°.(3)The calculated results for CENDL-3.2 significantly overestimated the measurements in the 3-8.5 MeV energy interval at 60°and 120°.(4)The calculated results with JENDL-5.0 were generally consistent with the measurement results.

关键词： Leakage neutron spectra Uranium D-T neutron source Evaluated nuclear data

Exact satisfiability and phase transition analysis of the regular(k,d)-CNF formula

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Frontiers of Computer Science 2024年第1期18卷 263-265页

作者： Guoxia NIE Daoyun XU xi WANG Zaijun zhang College of Computer Science and Technology Guizhou UniversityGuiyang 550025China School of Mathematics and Statistics Qiannan Normal University for NationalitiesDuyun 558000China Key Laboratory of Industrial Automation and Machine Vision of Qiannan Duyun 558000China

1Introduction The satisfiability(SAT)problem has been considered the"seed"of other NP-complete *** regular partial exact(k,d)-SAT problem is an important extension of the SAT *** any(k,d)-CNF formula with a variable set V,V'is a proper subset of V,the problem involves determining whether a truth assignment set on V'exists such that only a literal in each clause is *** V'=V,it is a regular exact(k,d)-SAT ***,both experimental verifications and theoretical analyses of k-SAT problem have shown that the ratioα(clause constraint density)of the number of clauses m to the number of variables n is an important parameter affecting the satisfiability of the formula[1].However,the regular(k,d)-SAT problem has the same clause constraint density d/k.

关键词： formula constraint exact

DMPP mitigates N_(2)O and NO productions by inhibiting ammonia-oxidizing bacteria in an intensified vegetable field under different temperature and moisture regimes

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Pedosphere 2024年第3期34卷 652-663页

作者： xi zhang xintong XU Chenyuan WANG Qianqian zhang Yubing DONG Zhengqin xiONG Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation College of Resources and Environmental SciencesNanjing Agricultural UniversityNanjing 210095(China) Department of Soil Science of Temperate Ecosystems Department of Agricultural Soil ScienceGeorg-August University of GottingenGottingen 37077(Germany) State Key Laboratory of Subtropical Silviculture Zhejiang A&F UniversityHangzhou 311300(China) Huaiyin Institute of Agricultural Sciences of Xuhuai Region in Jiangsu Jiangsu Academy of Agricultural SciencesHuai’an 223001(China)

Vegetable soils with high nitrogen input are major sources of nitrous oxide(N_(2)O)and nitric oxide(NO),and incorporation of the nitrification inhibitor 3,4-dimethylpyrazole phosphate(DMPP)into soils has been documented to effectively reduce ***,the efficiency of DMPP in terms of soil N_(2)O and NO mitigations varies greatly depending on soil temperature and moisture ***,further evaluations of DMPP efficiency in diverse environments are required to encourage widespread application.A laboratory incubation study(28 d)was established to investigate the interactive effects of DMPP,temperature(15,25,and 35?C),and soil moisture(55% and 80% of water-holding capacity(WHC))on net nitrification rate,N_(2)O and NO productions,and gene abundances of nitrifiers and denitrifiers in an intensive vegetable *** showed that incubating soil with 1%DMPP led to partial inhibition of the net nitrification rate and N_(2)O and NO productions,and the reduction percentage of N_(2)O production was higher than that of NO production(69.3%vs.38.2%)regardless of temperature and soil moisture *** increased temperatures promoted the net nitrification rate but decreased soil N_(2)O and NO *** moisture influenced NO production more than N_(2)O production,decreasing with the increased moisture level(80%).The inhibitory effect of DMPP on cumulative N_(2)O and NO productions decreased with increased temperatures at 55%***,the inhibitory effect of DMPP on cumulative N_(2)O production increased with increased temperatures at 80%*** on the correlation analyses and automatic linear modeling,the mitigation of both N_(2)O and NO productions from the soil induced by DMPP was attributed to the decreases in ammonia-oxidizing bacteria(AOB)amoA gene abundance and NO_(2)^(-)-N ***,our study indicated that DMPP reduced both N_(2)O and NO productions by regulating the associated AOB amoA gene abundance and NO_(2)^(-)-N concentra

关键词： 3,4-dimethylpyrazole phosphate environment condition gene abundance nitrification inhibitor nitrite accumulation soil water content

Integration of urchin-like MnCo_(2)O_(4)@C core–shell nanowire arrays within porous copper current collector for superior performance Li-ion battery anodes

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Rare Metals 2024年第2期43卷 599-611页

作者： Xue-Ru zhang Qiong Wu Yong zhang xi-Fei Li Ting xie Yu-Cheng Wu Instrumental Analysis Center Hefei University of TechnologyHefei230009China Key Laboratory of Advanced Functional Materials and Devices of Anhui Province Hefei230009China School of Materials Science and Engineering Hefei University of TechnologyHefei230009China Institute of Advanced Electrochemical Energy Xi’an University of TechnologyXi’an710048China

Spinel MnCo_(2)O_(4) is a promising energy storage candidate as anode materials in lithium-ion batteries owing to synergistic effects of two intrinsic solid-state redox ***,low conductivity,poor rate capacity and rapid capacity fading have seriously impaired its practical *** overcome the inferiorities,urchin-like MnCo_(2)O_(4)@C core–shell nanowire arrays have been fabricated directly within a porous copper current collector via a facile hydrothermal method followed by a chemical vapor deposition carbonization *** a typical nanowire,the core is composed of interconnected MnCo_(2)O_(4)nanoparticles and the shell shows as a thin amorphous carbon *** integrated MnCo_(2)O_(4)@C/Cu structure could act as working anodes without using additives or polymer *** MnCo_(2)O_(4)@C/Cu possesses slightly longer Li-ion insertion/desertion pathway than that of MnCo_(2)O_(4)/Cu,the carbon shell could effectively prevent the pulverization of MnCo_(2)O_(4) and lower down charge transfer resistance and actively participate in Li-ion *** rearrangement of carbon atoms during lithiation/delithiation cycling could inhibit the formation of passive solid electrolyte interphase *** a result,the MnCo_(2)O_(4)@C/Cu electrode presents superior rate capacity(600 mAh·g^(−1) at 1 A·g^(−1)) and better stability(797 mAh·g^(−1) after 200 cycles at 100 mA·g^(−1)).The excellent reversible Li ion storage capacity,cycling stability and rate capacity endow MnCo_(2)O_(4)@C/Cu great potential as stable and high output integrated anode materials in Li-ion batteries.

关键词： MnCo_(2)O_(4)@C Urchin-like nanowire arrays Core-shell Integrated anode materials Lithium-ion batteries

DMF-scMT-seq linking methylome and transcriptome within single cells with digital microfluidics

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Science China Chemistry 2024年第6期67卷 2070-2078页

作者： xing Xu xi Zeng xin lin Shiyan lin Shanshan Liang Tian Tian Rui Su Jia Song Chaoyong Yang Collaborative Innovation Center of Chemistry for Energy Materials The MOE Key Laboratory of Spectrochemical Analysis and InstrumentationState Key Laboratory of Physical Chemistry of Solid SurfacesDepartment of Chemical BiologyCollege of Chemistry and Chemical EngineeringThe First Affiliated Hospital of Xiamen UniversityXiamen UniversityXiamen361005China Institute of Molecular Medicine Renji HospitalShanghai Jiao Tong University School of MedicineShanghai200127China Chemistry and Materials Science College Shanghai Normal UniversityShanghai200234China Chemistry and Biomedicine Innovation Center(ChemBIC) School of Chemistry and Chemical EngineeringNanjing UniversityNanjing210023China

Single-cell joint analysis of methylome and transcriptome reveals how the methylation regulates the transcriptional ***,traditional bench-top protocols for single-cell DNA methylation and RNA transcription co-detection are laborintensive,cost-ineffective and ***,we establish the DMF-sc MT-seq,a highly-efficient and cost-effective method to simultaneously analyze single-cell DNA methylation and transcriptional activity based on digital *** MT-seq automates the workflow of single-cell isolation,cellular hypotonic lysis,nucleic acid separation and methylome/transcriptome library construction in a contactless and addressable *** system ensures high accuracy(R>0.85),high gene detection ability(14,697 genes per cell at 4 million sequencing depth),and high CpG coverage(677,198 CpG sites per cell at 1million sequencing depth).By using DMF-sc MT-seq,the relationship of DNA methylation and RNA transcription under different genomic contexts is *** further apply DMF-sc MT-seq to study the dynamics of transcription regulation with methylation-inhibiting anti-tumor Decitabine,and identify the methylated promoter/gene body driven genes in response to Decitabine ***-sc MT-seq facilitates the construction of the correlation of DNA methylation and transcriptional activity at the single-cell level in a flexible,sensitive and accurate way,which is anticipated to be a powerful tool in studying single-cell biological systems.

关键词： single-cell analysis digital microfluidics methylome sequencing transcriptome sequencing