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Longitudinal landscape of immune reconstitution after acute SARS-CoV-2 infection at single-cell resolution

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Science Bulletin 2025年第3期70卷 323-327页

作者： Lili Ren Yiwei Liu Yeming Wang Chao Wu Li Guo Lan Chen Xinming Wang Yan Xiao Lixue Huang Jingchuan Zhong Jiacheng Yao Lu Liu Hui Li Ying Wang Yongchao Ma Yichunzi Zhang lin Di Tao Dong Julian Knight Jianbin Wang Yanyi Huang Bin cao Xianwen Ren Jianwei Wang National Health Commission Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory National Institute of Pathogen BiologyChinese Academy of Medical Sciences&Peking Union Medical CollegeBeijing 102629China Key Laboratory of Respiratory Disease Pathogenomics Chinese Academy of Medical Sciences and Peking Union Medical CollegeBeijing 100730China State Key Laboratory of Respiratory Health and Multimorbidity Chinese Academy of Medical Sciences&Peking Union Medical CollegeBeijing 100029China Department of Pulmonary and Critical Care Medicine Institute of Respiratory Medicine of Chinese Academy of Medical ScienceNational Center for Respiratory MedicineCenter of Respiratory MedicineNational Clinical Research Center for Respiratory DiseasesChina-Japan Friendship HospitalBeijing 100029China College of Chemistry and Molecular Engineering Peking UniversityBeijing 100871China Biomedical Pioneering Innovation Center(BIOPIC) Beijing Advanced Innovation Center for Genomics(ICG)College of Chemistryand Peking-Tsinghua Center for Life SciencesPeking UniversityBeijing 100871China MRC Human Immunology Unit MRC Weatherall Institute of Molecular MedicineRadcliffe Department of MedicineThe University of OxfordOxford OX39DSUK Chinese Academy of Medical Science(CAMS)Oxford Institute(COI) University of OxfordOxford OX39DSUK Wellcome Centre for Human Genetics University of OxfordOxford OX39DSUK School of Life Sciences Tsinghua-Peking Center for Life SciencesTsinghua UniversityBeijing 100084China Beijing Advanced Innovation Center for Structural Biology(ICSB) Tsinghua UniversityBeijing 100084China Chinese Institute for Brain Research(CIBR) Beijing 102206China Institute for Cell Analysis Shenzhen Bay LaboratoryShenzhen 518107China Tsinghua University-Peking University Joint Center for Life Sciences Beijing 100084China Biomedical Pioneering Innovation Center(BIOPIC) Peking UniversityBeijing 100871China Changping Laboratory Beijing 102206China

The long-term consequences of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)infection,known as the post-acute sequelae of COVID-19(PASC),have been a growing concern.A significant proportion of COVID-19 patients experience persistent health issues even six to twelve months after recovering from acute infection[1],[2],[3],[4].Therefore,understanding the immune reconstitution process and identifying the molecular and cellular mechanisms underlying PASC is crucial.

关键词： landscape consequences acute

GPIO-Based Continuous Sliding Mode Control for Networked Control Systems Under Communication Delays With Experiments on Servo Motors

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IEEE/CAA Journal of Automatica Sinica 2025年第1期12卷 99-113页

作者： Kamal Rsetam Zhenwei cao Zhihong Man Xian-Ming Zhang the School of Software and Electrical Engineering Swinburne University of Technology the Department of Automated Manufacturing Al Khwarizmi College of Engineering University of Baghdad IEEE

To handle input and output time delays that commonly exist in many networked control systems(NCSs), a new robust continuous sliding mode control(CSMC) scheme is proposed for the output tracking in uncertain single input-single-output(SISO) networked control systems. This scheme consists of three consecutive steps. First, although the network-induced delay in those systems can be effectively handled by using Pade approximation(PA), the unmatched disturbance cames out as another difficulty in the control design. Second, to actively estimate this unmatched disturbance, a generalized proportional integral observer(GPIO) technique is utilized based on only one measured state. Third, by constructing a new sliding manifold with the aid of the estimated unmatched disturbance and states, a GPIO-based CSMC is synthesized, which is employed to cope with not only matched and unmatched disturbances, but also networkinduced delays. The stability of the entire closed-loop system under the proposed GPIO-based CSMC is detailedly *** promising tracking efficiency and feasibility of the proposed control methodology are verified through simulations and experiments on Quanser's servo module for motion control under various test conditions.

关键词： Continuous sliding mode control (CSMC) generalized proportional integral observer (GPIO) networked control systems (NCSs) pade approximation (PA) time-delay unsmatched disturbances

Improved Zero-Dynamics Attack Scheduling With State Estimation

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IEEE/CAA Journal of Automatica Sinica 2025年第2期12卷 472-474页

作者： Zhe Wang Heng Zhang Chaoqun Yang Xianghui cao the School of Computer Engineering Jiangsu Ocean University the School of Marine Technology and Geomatics Jiangsu Ocean University IEEE the School of Automation Southeast University

Dear Editor,This letter focuses on how an attacker can design suitable improved zero-dynamics (ZD) attack signal based on state estimates of target system. Improved ZD attack is to change zero dynamic gain matrix of a...

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横向定量牵拉损伤对大鼠视网膜神经节细胞自噬水平的影响

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国际眼科杂志 2022年第11期22卷 1771-1775页

作者：尚孟秋廖良吴琼孙武夏燕婷王露露王妍曹琳琳北京中医药大学中国北京市100015 北京中医药大学东方医院眼科中国北京市100078 首都医科大学附属北京同仁医院中国北京市100005 中国中医科学院眼科医院中国北京市100040

目的:研究不同程度牵拉力对大鼠视网膜神经节细胞(RGCs)存活率和神经传导功能的影响,探讨RGCs自噬水平对上述指标的影响。方法:选取健康雄性SD大鼠30只随机分为空白组、假手术组、0.15N组、0.3N组、0.6N组,每组各6只。模型组采用横向定... 详细信息

目的:研究不同程度牵拉力对大鼠视网膜神经节细胞(RGCs)存活率和神经传导功能的影响,探讨RGCs自噬水平对上述指标的影响。方法:选取健康雄性SD大鼠30只随机分为空白组、假手术组、0.15N组、0.3N组、0.6N组,每组各6只。模型组采用横向定量牵拉法制作视神经损伤大鼠模型。空白组大鼠不予处理。假手术组仅暴露视神经,不予牵拉。造模后第1、3d行闪光视觉诱发电位(f-VEP)检查,第3d取视网膜组织行Brn-3a免疫组织化学染色观察RGCs存活情况,透射电子显微镜观察自噬小体,蛋白质印迹法检测LC3BⅡ/Ⅰ蛋白表达水平。结果:造模后第3d,与假手术组比较,模型组大鼠f-VEP P2潜伏期延长,振幅降低,视网膜组织中RGCs存活率降低,LC3BⅡ/Ⅰ蛋白表达水平降低,且各组大鼠视网膜组织中均可见自噬小体。结论:视神经牵拉伤会降低大鼠早期视网膜自噬水平,导致RGCs死亡和相应的神经传导功能障碍,且不同牵拉力造成的损伤程度不同,RGCs存活情况可能与其自噬水平有关。

关键词：自噬外伤性视神经病变视网膜神经节细胞横向定量牵拉法闪光视觉诱发电位

Mitophagy in acute central nervous system injuries:regulatory mechanisms and therapeutic potentials

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Neural Regeneration Research 2025年第9期20卷 2437-2453页

作者： Siyi Xu Junqiu Jia Rui Mao Xiang cao Yun Xu Department of Neurology Nanjing Drum Tower HospitalClinical College of Jiangsu UniversityNanjingJiangsu ProvinceChina Department of Neurology Nanjing Drum Tower HospitalChinese Academy of Medical Science&Peking Union Medical CollegeNanjingJiangsu ProvinceChina Department of Neurology Nanjing Drum Tower HospitalAffiliated Hospital of Medical SchoolNanjing UniversityNanjingJiangsu ProvinceChina State Key Laboratory of Pharmaceutical Biotechnology and Institute of Translational Medicine for Brain Critical Diseases Nanjing UniversityNanjingJiangsu ProvinceChina Jiangsu Key Laboratory for Molecular Medicine Medical School of Nanjing UniversityNanjingJiangsu ProvinceChina Nanjing Neurology Medical Center NanjingJiangsu ProvinceChina

Acute central nervous system injuries,including ischemic stro ke,intracerebral hemorrhage,subarachnoid hemorrhage,traumatic brain injury,and spinal co rd injury,are a major global health *** optimal therapies and improving the long-term neurological functions of patients with acute central nervous system injuries are urgent *** are susceptible to damage after acute central nervous system injury,and this leads to the release of toxic levels of reactive oxygen species,which induce cell ***,a selective form of autophagy,is crucial in eliminating redundant or damaged mitochondria during these *** evidence has highlighted the significant role of mitophagy in acute central nervous system *** this review,we provide a comprehensive overview of the process,classification,and related mechanisms of *** also highlight the recent developments in research into the role of mitophagy in various acute central nervous system injuries and drug therapies that regulate *** the final section of this review,we emphasize the potential for treating these disorders by focusing on mitophagy and suggest future research paths in this area.

关键词： autophagy intracerebral hemorrhage ischemic stroke mitochondria mitochondrial biogenesis mitochondrial quality control mitophagy spinal cord injury subarachnoid hemorrhage traumatic brain injury

Managing virus diseases in citrus:Leveraging high-throughput sequencing for versatile applications

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Horticultural Plant Journal 2025年第1期11卷 57-68页

作者： Hongming Chen Zhiyou Xuan Lu Yang Song Zhang Mengji cao Integrative Science Center of Germplasm Creation in Western China(Chongqing)Science City Citrus Research InstituteSouthwest UniversityChongqing 400712China National Citrus Engineering Research Center Citrus Research InstituteSouthwest UniversityChongqing 400712China

In this review,the advantages and advances in applying high-throughput sequencing(HTS)in the management of viral diseases in citrus,along with some challenges,are discussed to provide perspectives on future *** the initial implementation of HTS in citrus virology,a substantial number of citrus viruses have been identified,with a notable increase in the last 7 *** acquisition of viral genomes and various HTS-based omics analyses serve as crucial pillars for advancing research in the etiology,epidemiology,pathology,evolution,ecology,and biotechnology of citrus *** has notably contributed to disease diagnosis,such as the diagnoses of concave gum and impietratura,as well as to the surveillance of new virus risks and the preparation of virus-free ***,certain inherent defects in HTS and coupled bioinformatics analysis,such as challenges with sequence assembly and the detection of viral dark matter,require improvement to enhance practical *** addition,the utilization of HTS for the systematic management of citrus viral diseases remains limited,and drawing insights from other virus-plant pathosystems while integrating emerging compatible techniques and ideas may broaden its specific applications.

关键词： Deep sequencing Virus epidemics Functional genomics CRISPR/Cas Virus-host interactions

lncRNA SNHG4 enhanced gastric cancer progression by modulating miR-409-3p/CREB1 axis

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Oncology Research 2025年第1期33卷 185-198页

作者： ZHOUYANG CHENG YUCHEN HUA YANG cao JUN QIN Department of General Surgery Affiliated Hospital of Nantong UniversityNantong226001China Department of Surgery Affiliated Hospital of Nantong UniversityMedical School of Nantong UniversityNantong226001China Department of Operation Affiliated Hospital of Nantong UniversityNantong226001China

Objective:Gastric cancer(GC)is a globally common cancer characterized by high incidence and mortality *** in the molecular understanding of GC provide promising targets for GC diagnosis and *** non-coding RNAs(lncRNAs)and their downstream regulators are regarded to be implicated in the progression of multiple types of *** have shown that the lncRNA small nucleolar RNA host gene 4(SNHG4)serves as a tumor promoter in various malignancies,while its function in GC has yet to be ***,our study aimed to explore the role and underlying mechanism of SNHG4 in ***:We used qRT-PCR to analyze SNHG4 expression in GC tissues and ***-Meier analysis was used to assess the correlation between SNHG4 expression and the survival rate of GC *** function experiments such as CCK-8,BrdU,colony formation,flow cytometry analysis,and transwell were performed to explore the effects of SNHG4 on GC cell proliferation,apoptosis,cell cycle,migration,and *** also established xenograft mouse models to explore the effect of SNHG4 on GC tumor ***,dual luciferase reporter assay was used to verify the interaction between SNHG4 and miR-409-3p and between miR-409-3p and cAMP responsive element binding protein 1(CREB1).Results:The results indicated that SNHG4 was overexpressed in GC tissues and cell lines,and was linked with poor survival rate of GC ***4 promoted GC cell proliferation,migration,and invasion while inhibiting cell apoptosis and cell cycle arrest in *** in vivo experiment indicated that SNHG4 facilitated GC tumor ***,SNHG4 was demonstrated to bind to ***,CREB1 was directly targeted by *** assays demonstrated that miR-409-3p deficiency reversed the suppressive impact of SNHG4 knockdown on GC cell ***,miR-409-3p was also revealed to inhibit GC cell proliferation,migration,and invasion by targeting CREB1

关键词： Gastric cancer Small nucleolar RNA host gene 4(SNHG4) MicroRNA-409-3p(miR-409-3p) cAMP responsive element binding protein 1(CREB1)

Holocene ecological evolution of Tengchong Qinghai Lake responses to climate changes and human activities in Yunnan,southwestern China

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Science China Earth Sciences 2025年第2期68卷 498-508页

作者： Enlou ZHANG Wenxiu ZHENG Yanmin cao Zhenyu NI Yanjie ZHAO Weiwei SUN Key Laboratory of Lake and Watershed Science for Water Security Nanjing Institute of Geography and LimnologyChinese Academy of SciencesNanjing 210008China University of Chinese Academy of Sciences Nanjing 211135China College of Urban and Environmental Sciences Hubei Normal UniversityHuangshi 435002China College of Resources and Environment South-Central Minzu UniversityWuhan 430074China

Holocene climate change's impact on ecosystems has attracted considerable *** human activities increasingly influenced ecosystems during the Holocene,many paleo-records primarily reconstruct natural environmental changes,often neglecting the pre-instrumental human influenceon ecological *** understand ecosystem responses comprehensively,it is essential to consider anthropogenic impacts alongside natural ***,we present a Holocene chironomid record from Qinghai Crater Lake in Tengchong,southwestern China,examining the timing and magnitude of natural and anthropogenic impacts on the lake ecosystem throughout the *** results reveal that early to midHolocene chironomid communities,especially in terms of species richness,were mainly driven by rising summer temperatures associated with increased solar *** the late-Holocene,the weakening Indian Summer Monsoon led to fluctuating lake levels and intensified human impacts,impacting both chironomid species richness and community *** 0.8 ka BP,enhanced human disturbances shifted the chironomid community composition from mesotrophic taxa dominance(e.g.,Cladotanytasus,Macropelopia)to eutrophic taxa dominance(e.g.,Chironomus,Polypedilum).Over the past few centuries,human influence has further increased chironomid species richness but has led to declining community stability.

关键词： Holocene Chironomid community Climate change Human impact Ecological response Qinghai Crater Lake

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Selective activation of dioxygen to singlet oxygen over La-Si co-doped TiO_(2)microspheres for photocatalytic degradation of formaldehyde

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Journal of Environmental Sciences 2025年第5期151卷 594-607页

作者： Shuaitao Li Haodi Liu Xun Hu Yanfen Fang Xiaofeng cao Qifeng Chen School of Materials Science&Engineering University of JinanJinan 250022China College of Biological and Pharmaceutical Sciences China Three Gorges UniversityYichang 443002China Technical Institute of Physics and Chemistry Chinese Academy of SciencesBeijing 100190China

Volatile Organic Compounds(VOCs)are highly harmful to human beings and other organisms,and thus the elimination of VOCs is extremely ***,La-Si co-doped TiO_(2)microsphere photocatalysts,which were prepared by a hydrothermal method,exhibited high photocatalytic activity in the decomposition of formaldehyde compared with TiO_(2).The improved activity can be attributed to the promoted separation efficiency and density of the charge carriers,as verified by the electrochemical results in combination with density functional theory *** addition,the Si dopant changed the microstructure and surface acidity,while the addition of La promoted the separation efficiency of charge *** interestingly,it was found that singlet oxygen was the key species in the activation of molecular dioxygen,and it played a pivotal role in the photocatalytic decomposition of *** work provides a novel strategy for the selective activation of dioxygen for use in the decomposition of formaldehyde.

关键词： Dioxygen molecular activation La-Si co-doped TiO_(2)microspheres Formaldehyde degradation Photocatalysis