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A human-specific insertion promotes cell proliferation and migration by enhancing TBC1D8B expression

Science China(Life Sciences) 2024年第4期67卷 765-777页

作者： hui Zhao Lin-Lin Liu Jian Sun Lian Jin Hai-Bing Xie Jian-Bo Li hui Xu Dong-Dong Wu Xiao-Lin Zhuang Min-Sheng Peng Ya-Jun Guo Wei-Zhu Qian Newton OOtecko Wei-Jie Sun liang-hu qu Jie He Zhao-Li Chen Rong Liu Ce-Shi Chen Ya-Ping Zhang State Key Laboratory for Conservation and Utilization of Bio-resource School of Life SciencesSchool of Ecology and Environmental ScienceYunnan UniversityKunming 650091China School of Forensic Medicine Kunming Medical UniversityKunming 650500China Academy of Biomedical Engineering Kunming Medical UniversityKunming 650500China The Third Affiliated Hospital Kunming Medical UniversityKunming 650118China Key Laboratory of Animal Models and human Disease Mechanisms of the Chinese Academy of Sciences and Yunnan Province Kunming Institute of ZoologyChinese Academy of SciencesKunming 650201China State Key Laboratory of Genetic Resources and Evolution Yunnan Laboratory of Molecular Biology of Domestic AnimalsKunming Institute of ZoologyChinese Academy of SciencesKunming 650201China The Key Laboratory of Gene Engineering of the Ministry of Education State Key Laboratory for BiocontrolSun Yat-sen UniversityGuangzhou 510275China National Engineering Research Center for Antibody Medicine and Shanghai Key Laboratory of Cell Engineering and Antibody Shanghai 201203China Department of Thoracic Surgery Cancer Institute and HospitalChinese Academy of Medical Sciences and Peking Union Medical CollegeBeijing 100730China

human-specific insertions play important roles in human phenotypes and *** we reported a 446-bp insertion(Insert-446)in intron 11 of the TBC1D8B gene,located on chromosome X,and traced its origin to a portion of intron 6 of the EBF1 gene on chromosome ***,Insert-446 was present in the human Neanderthal and Denisovans genomes,and was fixed in humans after human-chimpanzee *** have demonstrated that Insert-446 acts as an enhancer through binding transcript factors that promotes a higher expression of human TBC1D8B gene as compared with orthologs in *** addition,over-expression TBC1D8B promoted cell proliferation and migration through“a dual finger”catalytic mechanism(Arg538 and Gln573)in the TBC domain in vitro and knockdown of TBC1D8B attenuated tumorigenesis in *** of Insert-446 prevented cell proliferation and migration in cancer and normal *** results reveal that the human-specific Insert-446 promotes cell proliferation and migration by upregulating the expression of TBC1D8B *** findings provide a significant insight into the effects of human-specific insertions on evolution.

关键词： human-specific insertion enhancer gene expression cell proliferation and migration

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Isolation of a Tomato Protease that May Be Involved in Proteolysis of 1-Aminocyclopropane-l-Carboxylate Synthase

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Journal of Integrative Plant Biology 2005年第10期47卷 1220-1227页

作者： Jian-Feng LI liang-hu qu Ning LI Key Laboratory of Gene Engineering of the Ministry of Education Zhongshan University Guangzhou 510275 China Department of Biology The Hong Kong University of Science and Technology Clear Water Bay Hong Kong SAR China

1-aminocyclopropane- 1-carboxylate （ACC） synthase is a principal enzyme that catalyses the committed step in phytohormone ethylene biosynthesis. Previous evidence indicates that the hypervariable C-terminus of ACC synthase is most likely to be processed proteolytically in vivo. However, the protease responsible has not been identified thus far. In the present study, we detected proteolytic activity against ACC synthase （LeACS2） in tomato （Lycopersicon esculentum Mill.） fruit extract based on a newly established in vitro assay system. Purification of the protease through DEAE, gel filtration and MonoQ chromatography resulted in considerable enrichment of a 64-kDa protein species. Subsequent biochemical analysis of the purified tomato protease revealed that the optimal conditions for its proteolytic activity were at pH 8.0 and at 37 ~C. In addition, the protease activity was blocked completely by the metalloprotease inhibitor 1,10-phenanthroline. The present study represents the first report on the isolation of an ACC synthase- processing protease from plant tissues.

关键词： 1-aminocyclopropane-1-carboxylate (ACC) synthase biochemical analysis C-terminalproteolysis isolation protease.

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Optimization on crystallization process of the magnetic core lysozyme

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Particuology 2024年第4期87卷 106-113页

作者： Lixia Hou Chunxiao qu Min Su Zhihan liang Qi Hao School of Chemical Engineering Hebei University of TechnologyTianjin300130China

The continuous growth of the biomedical market highlights the significance of improvement in the ef-ficiency of batch production for protein drug ***,we investigated the effect of polymer-modified Fe_(3)O_(4) nanoparticles on lysozyme(Lys)crystallization at different conditions,using function-alized Fe_(3)O_(4) magnetic nanoparticles(Polymer C@Fe_(3)O_(4))as nucleation *** study revealed that the surface charge density of Polymer C@Fe_(3)O_(4) was highest at a modification mass ratio of Fe_(3)O_(4) to Polymer C is 8∶*** ratio facilitates the augmentation of electrostatic interaction and the promotion of *** adding 15%of the PolymerC@Fe_(3)O_(4) prepared from Fe_(3)O_(4) with an average particle size of 150 nm,the magnetic core lysozyme(M-Lys)crystals with an average particle size of 11.08μm,narrow size distribution,and regular morphology were obtained in a yield of 82.42%within 60 min.

关键词： Protein Crystallization Magnetic particle Lysozyme

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Improving the high cycle fatigue property of Ti6Al4V ELI alloy by optimizing the surface integrity through electric pulse combined with ultrasonic surface rolling process

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Journal of Materials Science & Technology 2024年第3期170卷 103-121页

作者： Pengfei Sun Shengguan qu Chenfeng Duan Xiongfeng hu Xiaoqiang Li National Engineering Research Center of Near-Net-Shape Forming for Metallic Materials South China University of TechnologyGuangzhou 510640China School of Mechanical and Automotive Engineering South China University of TechnologyGuangzhou 510640China

To improve the surface integrity and high cycle fatigue property of Ti6Al4V ELI alloy,the electric pulse has been introduced into the ultrasonic surface rolling process(USRP),which is called electric pulse-assisted ultrasonic surface rolling process(EUSRP).With the help of“electroplasticity”of the electric pulse,the thickness of the surface gradient deformation layer was about three times of the USRP specimens by adjusting the pulse current ***,the surface hardness decreases due to the continuous effect of the pulse current and the“skin effect”during *** is worth noting that the higher the applied pulse current,the more severe the *** paradox causes the fatigue performance of EUSRP specimens lower than that of USRP *** break this paradox,the EUSRP treatment is followed by a USRP *** EUSRP-2(with a pulse current of 200 A)+USRP specimens exhibit excellent surface hardness,a gradient deformation layer thickness of about 400μm,low surface roughness and high compressive residual compressive ***,the hardening mechanisms of the different surface strengthening specimens have been quantitatively analyzed in combination with microstructure *** fatigue life of Ti6Al4V ELI alloy can be improved by about 25 times at 780 MPa using the EUSRP-2+USRP treatment,the main reason for the highest fatigue life is the deepest surface gradient layer and the deepest crack initiation *** fatigue limit of the EUSRP-2+USRP specimens is not the highest because too much surface hardening causes compressive residual stress relaxation during cycling and the beneficial effect of compressive residual stress is eliminated.

关键词： Ti6Al4V ELI alloy Combined surface treatment Transmission electron microscopy Residual stress Fatigue performance

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A refined deviatoric hardening plastic model for sand

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Journal of Rock Mechanics and Geotechnical Engineering 2024年第7期16卷 2813-2821页

作者： Min Wang Tongming qu Yuntian Feng Teng liang liangtong Zhan MOE Key Laboratory of Soft Soils and Geoenvironmental Engineering Zhejiang UniversityHangzhou310058China Department of Civil and Environmental Engineering Hong Kong University of Science and TechnologyKowloon999077Hong KongChina Zienkiewicz Centre for Computational Engineering College of EngineeringSwansea UniversitySwanseaWalesSA18EPUK Center for Hypergravity Experimental and Interdisciplinary Research Zhejiang UniversityHangzhou310058China

The classical deviatoric hardening models are capable of characterizing the mechanical response of granular materials for a broad range of degrees of *** work finds that it has limitations in accurately predicting the volumetric deformation characteristics under a wide range of confining/consolidation *** issue stems from the pressure independent hardening law in the classical deviatoric hardening *** overcome this problem,we propose a refined deviatoric hardening model in which a pressure-dependent hardening law is developed based on experimental *** between numerical results and laboratory triaxial tests indicate that the improved model succeeds in capturing the volumetric deformation behavior under various confining/consolidation pressure conditions for both dense and loose ***,to examine the importance of the improved deviatoric hardening model,it is combined with the bounding surface plasticity theory to investigate the mechanical response of loose sand under complex cyclic loadings and different initial consolidation *** is proved that the proposed pressure-dependent deviatoric hardening law is capable of predicting the volumetric deformation characteristics to a satisfactory degree and plays an important role in the simulation of complex deformations for granular geomaterials.

关键词： Elasto-plastic deformation Isotropic hardening Deviatoric plastic strain Granular material Kinematic hardening Bounding surface

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Fault Analysis on AES:A Property-Based Verification Perspective

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Tsinghua Science and Technology 2024年第2期29卷 576-588页

作者： Xiaojie Dai Xingxin Wang Xue qu Baolei Mao Wei hu School of Cybersecurity Northwestern Polytechnical UniversityXi’an 710072China School of Cyber Science and Engineering Zhengzhou UniversityZhengzhou 450001China

Fault analysis is a frequently used side-channel attack for ***,existing fault attack methods usually involve complex fault fusion analysis or computation-intensive statistical analysis of massive fault *** this work,we take a property-based formal verification approach to fault *** derive fine-grained formal models for automatic fault propagation and fusion,which establish a mathematical foundation for precise measurement and formal reasoning of fault *** extract the correlations in fault effects in order to create properties for fault *** further propose a method for key recovery,by formally checking when the extracted properties can be satisfied with partial keys as the search *** results using both unprotected and masked advanced encryption standard(AES)implementations show that our method has a key search complexity of 216,which only requires two correct and faulty ciphertext pairs to determine the secret key,and does not assume knowledge about fault location or pattern.

关键词： side-channel attack fault analysis fault propagation model property extraction fault verification

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SPATULA as a Versatile Tool in Plant:The Progress and Perspectives of SPATULA(SPT)Transcriptional Factor

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Phyton-International Journal of Experimental Botany 2024年第3期93卷 517-531页

作者： Lei liang Xiangyang hu Shanghai Key Laboratory of Bio-Energy Crops Research Center for Natural ProductsPlant Science CenterSchool of Life SciencesShanghai UniversityShanghai200444China

With the rapid development of modern molecular biology and bioinformatics,many studies have proved that transcription factors play an important role in regulating the growth and development of ***(SPT)belongs to the bHLH transcription family and participates in many processes of regulating plant growth and *** review systemically summarizes the multiple roles of SPT in plant growth,development,and stress response,including seed germination,ﬂowering,leaf size,carpel development,and root elongation,which is helpful for us to better understand the functions of SPT.

关键词： SPT bHLH plant growth plant development Arabidopsis thaliana

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Leveraging diverse cell-death patterns to predict the clinical outcome of immune checkpoint therapy in lung adenocarcinoma:Based on muti-omics analysis and vitro assay

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Oncology Research 2024年第2期32卷 393-407页

作者： HONGYUAN liang YANQIU LI YONGGANG qu LINGYUN ZHANG Department of Radiology Shengjing Hospital of China Medical UniversityShenyangChina Department of Nephrology The First Affiliated Hospital of China Medical UniversityShenyangChina Department of Clinical Medicine China Medical UniversityShenyangChina Department of Medical Oncology The First Hospital of China Medical UniversityShenyangChina

Advanced LUAD shows limited response to treatment including immune *** the development of sequencing omics,it is urgent to combine high-throughput multi-omics data to identify new immune checkpoint therapeutic response *** GSE72094(n=386)and GSE31210(n=226)gene expression profile data in the GEO database,we identified genes associated with lung adenocarcinoma(LUAD)death using tools such as“edgeR”and“maftools”and visualized the characteristics of these genes using the“circlize”R *** constructed a prognostic model based on death-related genes and optimized the model using LASSO-Cox regression *** calculating the cell death index(CDI)of each individual,we divided LUAD patients into high and low CDI groups and examined the relationship between CDI and overall survival time by principal component analysis(PCA)and Kaplan-Meier *** also used the“ConsensusClusterPlus”tool for unsupervised clustering of LUAD subtypes based on model *** addition,we collected data on the expression of immunomodulatory genes and model genes for each cohort and performed tumor microenvironment *** also used the TIDE algorithm to predict immunotherapy responses in the CDI ***,we studied the effect of PRKCD on the proliferation and migration of LUAD cells through cell culture *** study utilized the TCGA-LUAD cohort(n=493)and identified 2,901 genes that are differentially expressed in patients with *** KEGG and GO enrichment analysis,these genes were found to be involved in a wide range of biological *** study also used univariate Cox regression models and LASSO regression analyses to identify 17 candidate genes that were best associated with mortality prognostic risk *** comparing the overall survival(OS)outcomes of patients with different CDI values,it was found that increased CDI levels were significantly associated with lower OS *** addition,the study used unsupervised cluster analysis to d

关键词： Lung adenocarcinoma Programmed cell death Iron-death Drug sensitivity Cancer therapy

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Cleavage of the Carboxyl-Terminus of LEACS2, a Tomato 1-Aminocyclopropane-l-Carboxylic Acid Synthase Isomer, by a 64-kDa Tomato Metalloprotease Produces a Truncated but Active Enzyme

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Journal of Integrative Plant Biology 2005年第11期47卷 1352-1363页

作者： Jian-Feng LI Robert QI liang-hu qu Autar K Mattoo Ning LI Department of Biology The Hong Kong University of Science and Technology Hong Kong SAR China Key Laboratory of Gene Engineering of the Ministry of Education Zhongshan University Guangzhou 510275 China Department of Biochemistry The Hong Kong University of Science and Technology Hong Kong SAR China Sustainable Agricultural Systems Laboratory United States Department of Agriculture-Agriculture Research Service Beltsville Maryland 20705-2350 USA

摘要：1-Aminocyclopropane-1-carboxylic 酸(ACC ) synthase (交流) 是在植物激素乙烯生合成的主要的酶。以前的研究证明了交流的 hypervariable C 终点解朊地在 vivo 被处理。然而，为这负责的朊酶还没被识别了。在现在的学习，我们... 详细信息

摘要：1-Aminocyclopropane-1-carboxylic 酸(ACC ) synthase (交流) 是在植物激素乙烯生合成的主要的酶。以前的研究证明了交流的 hypervariable C 终点解朊地在 vivo 被处理。然而，为这负责的朊酶还没被识别了。在现在的学习，我们调查了处理进 52- ， 50-kDa 和 49-kDa 的全身的西红柿交流(LeACS2 ) 截断了的 55-kDa 在成熟西红柿的 isoforms (Lycopersicon esculentum 米尔。cv。合作 903 ) 用钠 dodecyl 的水果沸腾硫酸盐的方法。同时，处理 LeACS2 朊酶从西红柿水果经由多步列层析被净化。64-kDa 的随后的生物化学的分析净化了揭示的朊酶它是在在 LeACS2 的 hypervariable C 终点以内的多重劈开地点活跃的 metalloprotease。N 终端定序和帮助矩阵的激光 desorption/ 电离 time-of-flight 分析显示处理 LeACS2 metalloprotease 在 C 终端地点 Lys438， Glu447， Lys448， Asn456， Ser460， Ser462， Lys463，和 Leu474 劈开，但是不劈开 LeACS2 的 N 终点。四 C-terminus-deleted (2650 氨基酸) LeACS2 熔化蛋白质被生产过多并且由这 metalloprotease 使遭到了到解朊作用识别位于 phosphorylation 地点 Ser460 的 N 终端方面的多重劈开地点。结果无争论馀地地为这 metalloprotease 在在螺旋领域(H14 ) 和 Ser460 之间的区域以内证实了劈开地点的存在。而且， C 严重地结果截断了 LeACS2 isoforms 酶地是活跃的。因为这朊酶能在类似于在 vivo 检测的那些的 vitro 生产 LeACS2 isoforms，这 metalloprotease 可以在 vivo 涉及 LeACS2 的解朊作用，这被建议。

关键词：羧基 LEACS2 西红柿 1-氨基三丙烷-1-羟基酸化酶蛋白酶

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Improved Reall-Santos method for AdS black holes in general 4-derivative gravities

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Science China(Physics,Mechanics & Astronomy) 2024年第8期67卷 74-86页

作者： Peng-Ju hu liang Ma Hong Lu Yi Pang Center for Joint quantum Studies and Department of Physics School of ScienceTianjin UniversityTianjin 300350China Joint School of National University of Singapore and Tianjin University International Campus of Tianjin UniversityFuzhou 350207China Peng huanwu Center for Fundamental Theory Hefei 230026China

For asymptotically flat black holes,Reall-Santos method is a convenient tool to compute leading higher derivative corrections to the thermodynamic quantities without actually solving the modified field ***,there are subtleties in its generalization to asymptotically AdS black holes with general higher derivative *** of all,it is necessary to know all the higher derivative holographic counterterms and the surface terms implementing the variational principle and subtracting the *** then needs to solve for the modified AdS radius and rescale the time coordinate in an appropriate way such that the induced metric on the conformal boundary of AdS black hole is not *** observe that Reall-Santos method can be directly applied to a particular 4-derivative gravity model,known as the Einstein-Weyl gravity,which does not modify the AdS radius and requires only the Gibbons-Hawking-York term and holographic counterterms for the 2-derivative *** thus suggest that to compute the thermodynamic quantities of AdS black holes in general 4-derivative theories of gravity,one simply needs to transform it to a Einstein-Weyl gravity with identical thermodynamic variables by appropriate field *** explicitly verify this proposal with spherically-symmetric and static charged black holes in Einstein-Maxwell theory extended with generic 4-derivative interactions.

关键词： black holes thermodynamics higher-derivative corrections effective theories higher dimensional black holes quantum gravity

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