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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles

Fungal Diversity 2020年第2期107卷 I0001-I0016页

作者： Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis yuri Tokarev Adriana Corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César Marín Daniel Stanton Daniyal Gohar Dhanushka N.wanasinghe Eveli Otsing Farzad Aslani gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol ina Timling inga Hiiesalu Jane Oja John y.Kupagme József Geml Julieta Alvarez-Manjarrez Kai ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett wagner M.Catherine Aime MaarjaÖpik María isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle Cleary Milan C.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian rajasree Nandi rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.Mendes-Alvarenga Roberto garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena Saleh rahimlou Samantha C.Karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-Kaarel Sepp Sunil Mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng yang Tom May Torda Varga Wei Li Victor rafael Matos Coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.Mikryukov yongzhong Lu yosuke Matsuda yumiko Miyamoto Urm institute of Ecology and Earth Sciences University of Tartu14A Ravila50411 TartuEstonia Natural History Museum University of Tartu46 Vanemuise Str51003 TartuEstonia Gothenburg Global Biodiversity Centre Box 46140530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgGothenburgSweden Department of Soil and Environment Swedish University of Agricultural SciencesBox 701475007 UppsalaSweden Department of Forest Mycology and Plant Pathology Swedish University of Agricultural SciencesBox 702675007 UppsalaSweden Section for Genetics and Evolutionary Biology(EvoGene) Department of BiosciencesUniversity of OsloP.O.Box 1066BlindernNO-0316 OsloNorway University of Hawaiʻi at Mānoa 3190 Maile WaySt.John 102HonoluluHIUSA Department of Biology University of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark Purdue University Northwest WestvilleIN 46391USA institute of Microbiology Czech Academy of SciencesVidenska 108314220 Praha 4Czech Republic GLOBE institute University of CopenhagenØster Farimagsgade 5KH7.2.321353 CopenhagenDenmark Dipartimento di Scienze della Vita e Biologia dei Sistemi Universitàdi TorinoViale Mattioli 2510125 TorinoItaly Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium Harvard University22 Divinity AveCambridgeMA 02138USA Blaihofstr.42 72074 TübingenGermany SyNLAB Estonia Veerenni 53aTallinn 11313Estonia Escuela de Tecnología Médica Universidad Santo TomásLos Carreras 753OsornoChile Centro de Genómica y Bioinformática Universidad MayorCamino La Pirámide 5750HuechurabaSantiagoChile Norwegian institute for Nature Research(NiNA) Sognsveien 680855 OsloNorway School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Evolutionary Biology Faculty of BiologyBiological and Chemical Research CentreUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of Botany Swedish Museum of

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental *** the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and ***,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains *** order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis *** the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,*** resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental *** order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal iTS *** the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.

关键词： Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing Community ecology

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Abstracts from the 15th international Myopia Conference

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Eye and Vision 2016年第1期3卷 211-221页

作者： Alexandra Benavente-Perez Ann Nour Tobin Ansel Kathleen Abarr Luying yan Keisha Roden David Troilo Chanyi Lu Miaozhen Pan Min Zheng Jia Qu Xiangtian Zhou Christine F. Wildsoet Fan Lu Jie Chen Jinhua Bao Liang Hu Qinmei wang Zibing Jin Frances Rucker Stephanie Britton Stephan Hanowsky Molly Spatcher Hui-ying Kuo Ching-Hsiu Ke i-Hsin Kuo Chien-Chun Peng Han-yin Sun ian G. Morgan Jeremy A. Guggenheim Rupal L. Shah Cathy Williams Jinglei yang Peter S. Reinach Sen Zhang Wenfeng Sun Bo Liu Fen Li Xiaoqing Li Aihua Zhao Tianlu Chen Wei Jia Jun Jiang Haoran Wu Kazuo Tsubota Hiroko Ozawa Hidemasa Torii Shigemasa Takamizawa Toshihide Kurihara Kazuno Negishi Klaus Graef Daniel rathbun Frank Schaeffel Ladan Ghodsi William K. Stell Machelle T. Pardue ranjay Chakraborty Han na Park Curran S. Sidhu P. Michael iuvone Michael J Collins Nethrajeith Srinvasalu Sally A. McFadden Paul N. Baird Pablo Artal Pauline Cho SW Cheung Pei-Chang Wu Quan V. Hoang Duk C. Lee Erica G. Landis Michael A. Bergen Curran Sidhu Samer Hattar Richard A. Stone ravi Metlapally Ruiqin Li Qinglin Xu Hong Zhong Chenglin Pan Weizhong Lan Xiaoning Li Ling Chen Zhikuan yang Scott A. Read Seang-Mei Saw Shi-Jun Weng Xiao-Hua Wu Kang-Wei Qian yun-yun Li Guo-Zhong Xu Furong Huang Xiong-Li yang yong-Mei Zhong Earl L Smith, iii Baskar Arumugam Li-Fang Hung Lisa A. Ostrin Klaus Trier Monica Jong Brien A. Holden Thomas Chuen Lam Samantha Shan Bing Zuo Dennis yan-yin Tse Jingfang Bian King-Kit Li Quan Liu Chi-ho To Timothy J. gawne John T. Siegwart, Jr. Alexander H. ward Thomas T. Norton yan Zhang yue Liu Carol Ho Eileen Phan Abraham Hang Emily Eng Christine Wildsoet Department of Biological Sciences SUNY College of Optometry New York NY 10036 USA School of Optometry and Ophthalmology and Eye Hospital Wenzhou Medical University Wenzhou Zhejiang 325027 China Center for Eye Disease & Development School of Optometry & Vision Science Program University of California Berkeley Berkeley CA 94720-2020 USA Wenzhou Medical University Wenzhou Zhejiang 325027 China Biomedical Science and Disease New England College of Optom Boston MA USA School of Optometry Chung Shan Medical University Taichung City 402 Taiwan institute of Medicine Chung Shan Medical University Taichung City 402 Taiwan Division of Biochemistry and Molecular Biology Research School of Biology Australian National University Canberra Australia State Key Laboratory of Ophthalmology and Division of Preventive Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangzhou China School of Optometry & Vision Sciences Cardiff University Cardiff UK School of Social and Community Medicine University of Bristol Bristol UK School of and Eye Hospital Wenzhou Medical University Wenzhou Zhejiang 325027 China State Key Laboratory Cultivation Base and Key Laboratory of Vision Science Ministry of Health and Zhejiang Provincial Key Laboratory of Ophthalmology and Optometry Wenzhou Zhejiang 325027 People’s Republic of China Shanghai Key Laboratory of Diabetes Mellitus and Center for Translational Medicine Shanghai Jiao Tong University Affiliated Sixth People’s Hospital Shanghai 200233 China Eye Hospital of Wenzhou Medical University Wenzhou Zhejiang 325027 China Department of Ophthalmology Keio University School of Medicine Shinjuku-ku Tokyo 160-8582 Japan General Medicine Ichikawa Medical Center Urayasu City Chiba 279-0001 Japan Ophthalmic Research institute University of Tuebingen 72076 Tuebingen Germany Bernstein Center for Computational Neuroscience Tuebingen 72076 Tuebingen Germany Werner Reichardt Centre for integrative Neuroscience Otfried-Mueller-Straße 25 Tueb

To assess the peripheral refractive changes that occur when eye growth decelerates in *** We measured peripheral refraction and on-axis vitreous chamber depth on a total of 53 marmosets;36 treated monocularly for 12 weeks 9 hrs/day(26 with-5 D contact lenses,10 with+5 D)and 17 untreated *** the 26 marmosets treated with-5 D,10 wore contact lenses 9 hrs/day without interruptions and were mea-sured at the end of 10 weeks of treatment(T10)and after 4 weeks of recovery(R14).Eight had both contact lenses removed for 30 mins twice/day(mid-morning and mid-afternoon)during the first four weeks of treatment(early interruption group)and eight had the lenses removed during the second four weeks of treatment(late interruption group).The two interruption groups were measured after 4,8 and 12 weeks of treatment only(T4,T8,T12).

关键词： removed treatment untreated

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颅内出血患者抗栓药逆转指南美国神经重症监护学会和美国重症医学会对医疗卫生专业人员的声明

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国际脑血管病杂志 2016年第11期24卷 961-985页

作者： Jennifer A. Frontera John J. Lewin Ⅲ Alejandro A. rabinstein imo P. Aisiku Anne W. Alexandrov Aaron M. Cook Gregory J. del Zoppo Monisha A. Kumar Ellinor i. B. Peerschke Michael F. Stiefel Jeanne S Teitelbaum Katja E. wartenberg Cindy L. Zerfoss 杨一萍谢丽丽宁小金季宇腾柯开富 From the Cerebrovascular Center Neurological Institute Cleveland Clinic and Case Western Reserve University 9500 Euclid Ave. S80 Cleveland OH44195 USA The Departments of Pharmacy and Anesthesiology & Critical Care Medicine The Johns Hopkins Hospital and Johns Hopkins University School of Medicine Baltimore MD USA The Department of Neurology Mayo Clinic Rochester MN USA Harvard Medical School Brigham and Women's Hospital Boston MA USA The University of Tennessee Health Science Center Memphis TN USA Department of Pharmacy Practice & Science (UK College of Pharmacy) University of Kentucky Lexington KY USA The Departments of Medicine (Hematology) and Neurology University of Washington School of Medicine Seattle WA USA The Departments of Neurology Neurosurgery Anesthesiology & Critical Care Perelman School of Medicine Hospital of the University of Pennsylvania Philadelphia PA USA The Department of Laboratory Medicine and Pathology Memorial Sloan Kettering Cancer Center and Weill Comell Medical School New York NY USA The Department of Neurosurgery Westchester Medical Center New York Medical College Valhalla NY USA Hepital du Sacre-Coeur and University of Montreal and Montreal Neurological institute and McGill University Montreal Quebec Canada Klinik fur Neurologie Martin-Luther-Universitat Halle-Wittenberg Halle Germany The Neuroscience and Neurosurgery Departments Centra Lynchburg General Hospital Lvnchburg VA. USA 南通大学附属医院神经内科 226001

背景抗栓药的使用，包括抗凝药、抗血小板药和溶栓药，在过去10年中日益增多并且预计将继续上升。虽然抗栓药相关性颅内出血可能是灾难性的，但快速逆转凝血功能障碍可能有助于限制血肿增大和改善转归。方法美国神经重症监护学会联合美... 详细信息

背景抗栓药的使用，包括抗凝药、抗血小板药和溶栓药，在过去10年中日益增多并且预计将继续上升。虽然抗栓药相关性颅内出血可能是灾难性的，但快速逆转凝血功能障碍可能有助于限制血肿增大和改善转归。方法美国神经重症监护学会联合美国重症医学会组建了一个国际性多机构委员会，涉及的专业领域包括神经重症监护、神经内科、神经外科、卒中、血液学、血液病理学、急诊医学、药学、护理和指南制定，目的是进行文献评价并制定一份循证实践指南。该委员会进行了正式的文献检索，并对符合标准的研究进行了评价。结果利用GraDE方法学，委员会提出了在颅内出血情况下逆转维生素K拮抗药、直接Xa因子拮抗药、直接凝血酶抑制药、普通肝素、低分子肝素、类肝素、戊多糖、溶栓药和抗血小板药的推荐意见。结论该指南提供了及时和循证的抗栓药逆转策略以协助临床医生治疗抗栓药相关性颅内出血。

关键词：抗凝药抗血小板药抗栓药颅内出血脑出血脑实质出血蛛网膜下腔出血硬膜下出血逆转解药维生素K拮抗药华法林香豆素直接凝血酶抑制药达比加群 Xa因子抑制药阿哌沙班利伐沙班依杜沙班低分子肝素肝素类肝素戊多糖磺达肝素 TPA rtPA 阿替普酶溶栓药纤溶酶原激活物阿司匹林氯吡格雷凝血酶原复合物新鲜冰冻血浆重组因子Ⅶa 鱼精蛋白血小板去氨加压素冷沉淀指南 GraDE标准

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Towards a global One Health index: a potential assessment tool for One Health performance

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infectious Diseases of Poverty 2022年第3期11卷 12-26页

作者： Xiao-Xi Zhang Jing-Shu Liu Le-Fei Han Shang Xia Shi-Zhu Li Odel yLi Kokouvi Kassegne Min Li Kun yin Qin-Qin Hu Le-Shan Xiu yong-Zhang Zhu Liang-yu Huang Xiang-Cheng wang yi Zhang Han-Qing Zhao Jing-Xian yin Tian-Ge Jiang Qin Li Si-Wei Fei Si-yu Gu Fu-Min Chen Nan Zhou Zi-Le Cheng yi Xie Hui-Min Li Jin Chen Zhao-yu Guo Jia-Xin Feng Lin Ai Jing-Bo Xue Qian ye Liz Grant Jun-Xia Song Geoff Simm Jürg Utzinger Xiao-Kui Guo Xiao-Nong Zhou School of Global Health Chinese Center for Tropical Diseases ResearchShanghai Jiao Tong University School of MedicineShanghaiPeople’s Republic of China One Health Center Shanghai Jiao Tong University-The University of EdinburghShanghaiPeople’s Republic of China National institute of Parasitic Diseases at Chinese Center for Disease Control and Prevention(Chinese Center for Tropical Diseases Research) NHC Key Laboratory of Parasite and Vector BiologyWHO Collaborating Centre for Tropical DiseasesShanghaiPeople’s Republic of China Shanghai Legislative Research institute ShanghaiPeople’s Republic of China Zhuhai Branch ESPREBeijing Normal University Zhuhai CampusZhuhaiGuangdongPeople’s Republic of China Global Health Academy The University of EdinburghEdinburghUK Food and Agriculture Organization of the United Nations RomeItaly Global Academy of Agriculture and Food Systems The University of EdinburghEdinburghUK Swiss Tropical and Public Health institute AllschwilSwitzerland University of Basel BaselSwitzerland

Background:A One Health approach has been increasingly mainstreamed by the international community, as it provides for holistic thinking in recognizing the close links and inter-dependence of the health of humans, animals and the environment. However, the dearth of real-world evidence has hampered application of a One Health approach in shaping policies and practice. This study proposes the development of a potential evaluation tool for One Health performance, in order to contribute to the scientific measurement of One Health approach and the identification of gaps where One Health capacity building is most urgently ***:We describe five steps towards a global One Health index (GOHi), including (i) framework formulation;(ii) indicator selection;(iii) database building;(iv) weight determination;and (v) GOHi scores calculation. A cell-like framework for GOHi is proposed, which comprises an external drivers index (EDi), an intrinsic drivers index (iDi) and a core drivers index (CDi). We construct the indicator scheme for GOHi based on this framework after multiple rounds of panel discussions with our expert advisory committee. A fuzzy analytical hierarchy process is adopted to determine the weights for each of the ***:The weighted indicator scheme of GOHi comprises three first-level indicators, 13 second-level indicators, and 57 third-level indicators. According to the pilot analysis based on the data from more than 200 countries/territories the GOHi scores overall are far from ideal (the highest score of 65.0 out of a maximum score of 100), and we found considerable variations among different countries/territories (31.8–65.0). The results from the pilot analysis are consistent with the results from a literature review, which suggests that a GOHi as a potential tool for the assessment of One Health performance might be ***:GOHi—subject to rigorous validation—would represent the world’s first evaluation tool that constructs the

关键词： Antimicrobial resistance Cell-like framework Climate change Food security Global One Health index(GOHi) Global performance assessment Governance Zoonotic diseases

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血浆置换治疗儿童溶血尿毒综合征多中心流行病学调查

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中华实用儿科临床杂志 2018年第13期33卷 1022-1027页

作者：中国医师协会儿科医师分会血液净化专家委员会郑悦徐可雷晔飞冯仕品王墨郝志宏高岩李宇红周萍肖政辉赵凯妹夏正坤栾春丽刘雪梅赵丽君陆国平张育才陈朝英栾江威张建江刘翠华陈丽植赵成广吴玉斌姚勇曲强谢敏刘喜万俊丽焦佳石咏琪杨琴于力张瑶李颖杰许自川蒋新辉邵晓珊张思佳卢秀兰张岩马青山何旭史卓李倩孙书珍张洪霞潘艳艳仇三玲蔡小狄徐虹朱艳史婧奕耿海云祝高红戚畅贾莉敏刘俊梅厉洪江李广波蒋小云不详中国医科大学附属盛京医院小儿肾脏风湿免疫科沈阳110004 北京大学第一医院儿科 100034 郴州市第一人民医院儿科湖南郴州423000 成都市妇女儿童中心医院肾内科 610091 重庆医科大学附属儿童医院肾脏免疫科 400014 广州市第一人民医院儿科 510180 广州市妇女儿童医疗中心肾内科 510120 贵阳市儿童医院肾脏风湿科 550003 哈尔滨医科大学附属第二医院儿科 150086 湖南省儿童医院急救中心长沙410007 吉林大学白求恩第一医院儿童肾病科吉林130021 南京军区南京总医院儿科 210002 山东大学附属省立医院儿科肾脏风湿免疫科济南250021 山东大学齐鲁儿童医院肾内科济南250022 山西省儿童医院肾内科太原030013 复旦大学附属儿科医院重症医学科上海201102 上海市儿童医院重症医学科 200042 首都儿科研究所附属儿童医院肾内科 100020 武汉儿童医院肾内科 430016 郑州大学第一附属医院儿内科 450052 郑州大学附属儿童医院肾脏风湿科 450018 中山大学附属第一医院儿科广州510080

目的了解全国儿科血浆置换治疗溶血尿毒综合征（HUS）的现状，为进一步规范诊疗共识提供参考依据。方法中国医师协会儿科医师分会血液净化专家委员会讨论并制定调查表，以问卷调查的形式，收集22家单位2012年1月至2017年12月住院的146... 详细信息

目的了解全国儿科血浆置换治疗溶血尿毒综合征（HUS）的现状，为进一步规范诊疗共识提供参考依据。方法中国医师协会儿科医师分会血液净化专家委员会讨论并制定调查表，以问卷调查的形式，收集22家单位2012年1月至2017年12月住院的146例行血浆置换的HUS患儿的病历资料进行统计学分析。结果1．共收集数据146例，其中男91例，女55例；平均年龄5.68岁（2个月～18岁）；病因主要为感染（60例，41.1%），其次为补体缺陷（18例，12.3%）、药物（15例，10.3%）、风湿性疾病（9例，6.2%）及遗传代谢病（6例，4.1%）等。2.血液置换前患儿主要表现为少尿或无尿（101例），其次为意识障碍（45例）、高血压（58例）、消化道出血（42例）等症状，置换后明显缓解。3.血浆置换前实验室指标主要表现为血红蛋白[（68.26±18.17） g/L]、红细胞计数[（2.43±0.70） ×10^9/L]、血小板计数[（77.49±72.93） ×10^9/L]、补体C3[（0.70±0.26） g/L]、肾小球滤过率（GFR） [（26.98±17.16） mL/1.73 m2]下降，总胆红素[（44.33±42.07） μmol/L]、非结合胆红素[（30.78±26.68） μmol/L]、纤维蛋白降解产物（FDP）[（12.52±14.97） mg/L]、D-二聚体[（2 306.20±2 354.97） μg/L]、肌酐[（305.45±290.19） μmol/L]、24 h尿蛋白[（2.17±2.55） g/d]升高，置换后以上指标均显著好转[分别为（85.08±18.98） g/L、（2.80±0.98）×10^9/L、（183.80±131.95）×10^9/L、（0.85±0.25） g/L、（98.58±66.02） mL/1.73 m2、（19.71±33.24） μmol/L、（9.60±10.00） μmol/L、（7.33±9.81） mg/L、（1 322.05±1 595.23） μg/L、（139.28±163.75） μmol/L、（1.46±2.03） g/d]，差异均有统计学意义（均P〈0.05）。4.出现并发症5例，2例低血压休克，管路堵塞、血小板减少、贫血加重各1例。5.经治疗后好转130例（89%），死亡16例（11%）。结论血浆置换治疗儿童HUS在国内已较广泛开展，有效性和安全性已得到证实，其治疗时机有待循证医学进一步证实。

关键词：溶血尿毒综合征血浆置换儿童流行病学

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