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Unstable Allotetraploid Tobacco Genome due to Frequent Homeologous Recombination, -. Segmental Deletion, and Chromosome Loss

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Molecular Plant 2018年第7期11卷 914-927页

作者： Shumin Chen Feihong Ren Lei Zhang Yong Liu Xuejun Chen Yuanmei Li Liang Zhang Bin Zhu Pan.Zeng Zaiyun Li Robert M. Larkin hanhui kuang Key Laboratory of Horticultural Plant Biology Ministry of Education Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region) MOA College of Horticulture and Forestry Sciences Huazhong Agricultural University Wuhan 430070 People's Republic of China Yunan Academy of Tobacco Agricultural Science Kunming Yunnan Province People's Republic of China College of Plant Science Huazhong Agricultural University Wuhan 430070 People's Republic of China These authors contributed equally to this article.

The types of mutations and their corresponding frequencies are difficult to measure in complex genomes. In this study, a high-throughput method was developed to identify spontaneous loss-of-function alleles for the resistance gene N and the transgenic avirulence gene P50 in allotetraploid tobacco. A total of 2134 loss- of-function alleles of the N gene were identified after screening 14 million F1 hybrids. Analysis of these mutants revealed striking evolutionary patterns for genes in polyploids. Only 14 of the loss-of-function mutations were caused by spontaneous point mutations or indels, while the others were caused by home- ologous recombination （with a frequency of 1/12 000） or chromosome loss （1/15 000）. Loss of the chromosome with the PS0 insertion occurred at a similar frequency （1/13 000）, and the frequency of spon- taneous segmental deletion in this chromosome was 1/16 000. Both homeologous recombination and chromosome loss considerably decreased the viability of the mutants. Our data suggest that the high mutation rate in polyploids is probably due to the occurrence of homeologous recombination and the toler- ance of large mutations such as chromosome loss in polyploid genomes. Frequent mutations tend to drive polyploids to extinction unless a novel mutation helps the polyploid to effectively compete with diploids or find a new ecological niche.

关键词： polyploid genome evolution homeologous recombination chromosome loss spontaneous mutation

Watermelon domestication was shaped by stepwise selection and regulation of the metabolome

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Science China(Life Sciences) 2023年第3期66卷 579-594页

作者： Pingli Yuan Congping Xu Nan He Xuqiang Lu Xingping Zhang Jianli Shang Hongju Zhu Chengsheng Gong hanhui kuang Tang Tang Yong Xu Shuangwu Ma Dexi Sun Weiqin Zhang Muhammad J.Umer Jian Shi Alisdair R.Fernie Wenge Liu Jie Luo Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits Zhengzhou Fruit Research InstituteChinese Academy of Agricultural SciencesZhengzhou 450009China Hainan Yazhou Bay Seed Laboratory Sanya Nanfan Research Institute of Hainan UniversitySanya 572025China Peking University Institute of Advanced Agricultural Sciences Weifang 261325China College of Horticulture and Forestry Sciences Huazhong Agricultural UniversityWuhan 430070China Wuhan Metware Biotechnology Co. Ltd.Wuhan 430070China National Watermelon and Melon Improvement Center Beijing Academy of Agricultural and Forestry SciencesBeijing 100097China Max-Planck-Institute of Molecular Plant Physiology Potsdam-Golm 144776Germany College of Tropical Crops Hainan UniversityHaikou 572208China

Although crop domestication has greatly aided human civilization,the sequential domestication and regulation of most quality traits remain poorly ***,we report the stepwise selection and regulation of major fruit quality traits that occurred during watermelon *** levels of fruit cucurbitacins and flavonoids were negatively selected during speciation,whereas sugar and carotenoid contents were positively selected during ***,fruit malic acid and citric acid showed the opposite selection trends during the *** identified a novel gene cluster(CGC1,cucurbitacin gene cluster on chromosome 1)containing both regulatory and structural genes involved in cucurbitacin biosynthesis,which revealed a cascade of transcriptional regulation operating *** the CGC1,an allele caused a single nucleotide change in Cl ERF1 binding sites(GCC-box)in the promoter of Cl Bh1,which resulted in reduced expression of Cl Bh1 and inhibition of cucurbitacin synthesis in cultivated *** analysis revealed that a rare insertion of 244 amino acids,which arose in *** and became fixed in sweet watermelon,in Cl OSC(oxidosqualene cyclase)was critical for the negative selection of cucurbitacins during watermelon *** research provides an important resource for metabolomics-assisted breeding in watermelon and for exploring metabolic pathway regulation mechanisms.

关键词： metabolome mGWAS gene cluster domestication cucurbitacin biosynthesis

Prediction model for corrosion rate of low-alloy steels under atmospheric conditions using machine learning algorithms

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International Journal of Minerals,Metallurgy and Materials 2024年第2期31卷 337-350页

作者： Jingou kuang Zhilin Long School of Civil Engineering Xiangtan UniversityXiangtan 411105China

This work constructed a machine learning(ML)model to predict the atmospheric corrosion rate of low-alloy steels(LAS).The material properties of LAS,environmental factors,and exposure time were used as the input,while the corrosion rate as the output.6 dif-ferent ML algorithms were used to construct the proposed *** optimization and filtering,the eXtreme gradient boosting(XG-Boost)model exhibited good corrosion rate prediction *** features of material properties were then transformed into atomic and physical features using the proposed property transformation approach,and the dominant descriptors that affected the corrosion rate were filtered using the recursive feature elimination(RFE)as well as XGBoost *** established ML models exhibited better predic-tion performance and generalization ability via property transformation *** addition,the SHapley additive exPlanations(SHAP)method was applied to analyze the relationship between the descriptors and corrosion *** results showed that the property transformation model could effectively help with analyzing the corrosion behavior,thereby significantly improving the generalization ability of corrosion rate prediction models.

关键词： machine learning low-alloy steel atmospheric corrosion prediction corrosion rate feature fusion

Synergistic extraction and separation of thorium from rare earths in chloride media using mixture of Cextrant 230 and Cyanex 923

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Journal of Rare Earths 2024年第4期42卷 759-767页

作者： Hui Wang Shengting kuang Wuping Liao School of Rare Earths University of Science and Technology of ChinaHefei230026China Institute of Material and Chemistry Ganjiang Innovation AcademyChinese Academy of SciencesGanzhou341000China State Key Laboratory of Rare Earth Resource Utilization Changchun Institute of Applied ChemistryChinese Academy of SciencesChangchun130022China

In order to lower the usage of expensive Cyanex 923 and increase the extraction capacity of the system of Cextrant 230,the synergistic extraction of thorium from chloride media by a mixture of Cextrant 230 and Cyanex 923 was *** maximum synergistic enhancement coefficient(R)of 1.53 is obtained at 1:1 molar ratio of Cextrant 230/Cyanex *** syne rgistic extracted species of Th^(4+)is determined as ThCl_(4)·2Cextrant 230·Cyanex *** synergistic extraction of Th^(4+)is an entropy-driven exothermic *** loading capacity of 0.60 mol/L mixed extractant for thorium is about 17.10 g/L(calculated as ThO_(2)),and the loaded thorium in the organic phase can be effectively stripped by distilled *** comparison,rare earth cations are barely extracted under the similar conditions,suggesting that the mixtures can be applied to separate thorium from rare earths.A cascade extraction process was developed based on the synergistic extraction system to separate thorium from the hydrochloric acid leaching of *** content of thorium in the leaching solution decreases obviously from 19.90 mg/L to1.4μg/L by 3 stages of extraction,which is superior to sole Cextrant 230 or Cyanex *** introduction of Cextrant 230 into the extraction system not only lowers the usage of Cyanex 923 but also enhances the selective extraction of thorium at low acidity,implying that the synergistic extraction system can selectively extract thorium more efficiently and economically than the sole systems.

关键词： Synergistic extraction Cextrant 230 Cyanex 923 Thorium Rare earths

Hierarchical Privacy Protection Model in Advanced Metering Infrastructure Based on Cloud and Fog Assistance

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Computers, Materials & Continua 2024年第8期80卷 3193-3219页

作者： Linghong kuang Wenlong Shi Jing Zhang School of Computer Science and Mathematics Fujian University of TechnologyFuzhou350118China Fujian Provincial Key Laboratory of Big Data Mining and Applications Fuzhou350118China

The Advanced Metering Infrastructure(AMI),as a crucial subsystem in the smart grid,is responsible for measuring user electricity consumption and plays a vital role in communication between providers and ***,with the advancement of information and communication technology,new security and privacy challenges have emerged for *** address these challenges and enhance the security and privacy of user data in the smart grid,a Hierarchical Privacy Protection Model in Advanced Metering Infrastructure based on Cloud and Fog Assistance(HPPM-AMICFA)is proposed in this *** proposed model integrates cloud and fog computing with hierarchical threshold encryption,offering a flexible and efficient privacy protection solution that significantly enhances data security in the smart *** methodology involves setting user protection levels by processing missing data and utilizing fuzzy comprehensive analysis to evaluate user importance,thereby assigning appropriate protection ***,a hierarchical threshold encryption algorithm is developed to provide differentiated protection strategies for fog nodes based on user IDs,ensuring secure aggregation and encryption of user *** results demonstrate that HPPM-AMICFA effectively resists various attack strategies while minimizing time costs,thereby safeguarding user data in the smart grid.

关键词： AMI cloud and fog assistance fuzzy comprehensive analysis hierarchical threshold encryption

Evolution of the Resistance against TMV in Nicotiana spp.

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Evolution of the Resistance against TMV in Nicotiana spp.

Monitoring of Cell Membrane Microenvironment Based on DNA Nanodevices

第十三届全国植物基因组学大会

作者： Shumin Chen,Jiongjiong Chen,Feihong Ren,Zhujun Wu,,Hui Zhang,Chenhuan Yan, hanhui kuang~* Dept of Vegetable Crops,Huazhong Agricultural University,Wuhan 430070,China

The resistance gene N against TMV is alternatively spliced and its two transcripts are required for its full *** alternative exon is provided by a miniature invertedrepeat transposable element(MITE).The insertion of the MITE in intron 3 was found only in the Ngene but not in any other N *** better understand the evolution of the N gene,its avirulence gene(p50) in TMV was transformed into a

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Chemical Research in Chinese Universities 2024年第2期40卷 255-267页

作者： NAN Hexin CAI Ming kuang Shi NIE Zhou State Key Laboratory of Chemo/Biosensing and Chemometrics College of Chemistry and Chemical EngineeringHunan Provincial Key Laboratory of Biomacromolecular Chemical BiologyHunan UniversityChangsha410082P.R.China

The cell membrane is a critical barrier for cellular homeostasis,integral to signaling and intercellular communication,and vital for understanding cellular functions and disease *** its microenvironment is crucial for uncovering the molecular basis of physiological and pathological processes associated with the cell membrane,driving the development of bioanalytical toolkits capable of dynamically monitoring the cell surface *** the continuous advancement of functional nucleic acids and dynamic DNA nanotechnology,DNA nanodevices with controllable nanosized geometry,specific molecular recognition,and selective membrane-localization properties offer a versatile platform for probing the cell membrane *** this review,we summarize the current biosensing and membrane-anchoring mechanisms of DNA nanodevices and highlight their use in studying key cell membrane events,including membrane lipid dynamics,transmembrane transport,receptor dimerization,and signal ***,we discuss the challenges and potential future applications of DNA nanodevices in advancing cell membrane biology research and biomedical applications.

关键词： DNA nanodevice Cell membrane Cellular micro-environment Monitoring

Aldehyde oxidase mediated enantioselective metabolic health risk of dinotefuran

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Science China Chemistry 2024年第6期67卷 2079-2091页

作者： Liwei Xu Xinxin Xu Hua kuang Chuanlai Xu Xiaoling Wu State Key Laboratory of Food Science and Resources Jiangnan UniversityWuxi214122China International Joint Research Laboratory for Biointerface and Biodetection and School of Food Science and Technology Jiangnan UniversityWuxi214122China Collaborative Innovation center of Food Safety and Quality Control in Jiangsu Province Jiangnan UniversityWuxi214122China

Chiral pollutants often pose significant differential environmental health *** this study,the biotransformation of chiral dinotefuran(DIN)and its enantioselective metabolic toxicity mechanisms have been systemically ***,reversedphase chromatography-high resolution mass spectrometry was developed to quantify the content of DIN R/S chiral enantiomer with pg level sensitivity,revealing a lower elimination rate constant(K_(e))of S-DIN(0.730 h^(-1))than R-DIN(0.746 h^(-1)).Secondly,the interaction mechanism between DIN metabolism and important endogenous bioactive molecules,such as aldehyde oxidase(AOX)and neurotransmitters,was *** DIN nitro-group was converted into a guanidine group by the reducing site of nearby flavin adenine dinucleotide(FAD)in AOX with the preferred higher affinity of ***,the endogenous tryptophan(Trp)aldehyde metabolic intermediate,5-hydroxyindoleacetaldehyde(5-HIAL),provides a persistent electron donor for DIN reduction via the oxidation-catalyzed site in AOX,resulting in remarkable up-regulation of monoamine neurotransmitters such as serotonin and ***,the higher level of neurotransmitters further mediated dysregulation of oxylipin homeostasis via the serotonergic pathway,where S-DIN exhibited more pronounced liver lipid damage and environmental health risk with the accumulated lipid biomarkers,oxidized triglyceride(OxTG)and oxidized sphingomyelin(OxSM).This study elucidates the AOX-mediated enantioselectivity metabolic pathway of DIN,providing a new analytical method for chiral pollutants and paves the way for their health risk assessments.

关键词： neonicotinoid dinotefuran enantiomer aldehyde oxidase metabolomics health risk

Synergistic strengthening mechanism of Ca^(2+)-sodium silicate to selective separation of feldspar and quartz

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International Journal of Minerals,Metallurgy and Materials 2024年第9期31卷 1985-1995页

作者： Bo Lin Jingzhong kuang Yiqiang Yang Zheyu Huang Delong Yang Mingming Yu School of Resources and Environmental Engineering Jiangxi University of Science and TechnologyGanzhou 341000China Jiangxi Key Laboratory of Mining Engineering Ganzhou 341000China

Inhibitors are important for flotation separation of quartz and *** this study,a novel combined inhibitor was used to separate quartz and feldspar in near-neutral *** inhibition of the combined inhibitor was assessed by micro-flotation *** a series of detection methods were used to detect differences in the surface properties of feldspars and quartz after flotation reagents and put forward the synergistic strengthening *** outcomes were pointed out that pre-mixing combined inhibitors were more effective than the addition of Ca^(2+)and SS in sequence under the optimal proportion of 1:5.A concentrate from artificial mixed minerals that was characterized by a high quartz grade and a high recovery was acquired,and was found to be 90.70wt% and 83.70%,*** was demonstrated that the combined inhibitor selectively prevented the action of the collector and feldspar from Fourier-transform infrared(FT-IR)and adsorption capacity *** results of X-ray photoelectron spectroscopy(XPS)indicated that Ca^(2+)directly interacts with the surface of quartz to increase the adsorption of *** contrast,the chemistry property of Al on the feldspar surface was altered by combined inhibitor due to Na^(+)and Ca^(2+)taking the place of K^(+),resulting in the composite inhibitor forms a hydrophilic structure,which prevents the adsorption of the collector on the surface of feldspar by interacting with the Al active *** combination of Ca^(2+)and SS synergically strengthens the difference of collecting property between quartz and feldspar by collector,thus achieving the effect of efficient separation.A new strategy for flotation to separate quartz from feldspar in near-neutral pulp was provided.

关键词： feldspar quartz Ca^(2+)-sodium silicate selective adsorption flotation separation