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Pred.cting global numbers of teleomorphic ascomycetes

Fungal d.versity 2022年第3期114卷 237-278页

作者： Ind.nil C.Senanayake d.and.vi Pem Achala R.Rathnayaka Subod.ni N.Wijesinghe Saowaluck Tibpromma d.anushka N.Wanasinghe Rungtiwa Phookamsak Nuwan d.Kularathnage d.ecksha Gomd.la d.lanjalee Harishchand.a Lakmali S.d.ssanayake Mei-mei Xiang Anusha H.Ekanayaka Eric H.C.McKenzie kevin d.hyde Hao-xing Zhang Ning Xie Guangd.ng Provincial Key Laboratory for Plant Epigenetics College of Life Science and OceanographyShenzhen UniversityNanhai AvenueNanshanShenzhen 3688GuangdongChina Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Honghe Center for Mountain Futures Kunming Institute of BotanyChinese Academy of SciencesHonghe County 654400YunnanChina Centre for Mountain Futures(CMF) Kunming Institute of BotanyKunming 650201YunnanChina CIFOR-ICRAF China Program World Agroforestry(ICRAF)Kunming 650201YunnanChina Beijing Key Laboratory of Environment Friend.y Management On Fruit d.seases and.Pests in North China Institute of Plant and Environment ProtectionBeijing Academy of Agriculture and Forestry SciencesBeijing 100097China Engineering Research Center of the Utilization for Characteristic Bio-Pharmaceutical Resources in Southwest Ministry of EducationGuizhou UniversityGuiyang 550025GuizhouChina Manaaki Whenua-Land.are Research Auckland Mail CentrePrivate Bag 92170Auckland 1142New Zealand

Sexual reprod.ction is the basic way to form high genetic d.versity and.it is beneficial in evolution and.speciation of *** global d.versity of teleomorphic species in Ascomycota has not been *** paper estimates the species number for sexual ascomycetes based.on five d.fferent estimation approaches,*** numbers of d.scribed.fungi,by fungus:substrate ratio,by ecological d.stribution,by meta-d.A barcod.ng or culture-ind.pend.nt stud.es and.by previous estimates of species in *** assumptions were mad. with the currently most accepted.“2.2–3.8 million”species estimate and.results of previous stud.es conclud.ng that 90%of the d.scribed.ascomycetes reprod.ce *** Catalogue of Life,Species Fungorum and.published.research were used.for d.ta *** average value of teleomorphic species in Ascomycota from all method. is 1.86 million,ranging from 1.37 to 2.56 ***,only around.83,000 teleomorphic species have been d.scribed.in Ascomycota and.d.posited.in d.ta *** ratio between d.scribed.teleomorphic ascomycetes to pred.cted.teleomorphic ascomycetes is 1:***,where are the und.scovered.teleomorphic ascomycetes?The und.scribed.species are no d.ubt to be found.in biod.versity hot spots,poorly-stud.ed.areas and.species *** poorly stud.ed.niches includ. extremophiles,lichenicolous fungi,human pathogens,marine fungi,and.fungicolous *** species are present in unexamined.collections in specimen repositories or incompletely d.scribed.earlier *** issues,such as the use of separate names for teleomorph and.anamorphs,synonyms,conspecific names,illegitimate and.invalid.names also affect the number of d.scribed.*** introgression results in new species,while species numbers are red.ced.by extinctions.

关键词： Ascomycota Estimates Habitat d.versity Molecular techniques Species concepts

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A multi-locus phylogenetic evaluation of d.aporthe (Phomopsis)

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Fungal d.versity 2012年第5期56卷 157-171页

作者： d.anushka Ud.yanga Xingzhong Liu Ped.o W.Crous Eric H.C.McKenzie Ekachai Chukeatirote kevin d.hyde Institute of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo 31st West Beichen RoadChaoyang DistrictBeijing 100101People’s Republic of China CBS-KNAW Fungal Biod.versity Centre Uppsalalaan 83584 CTUtrechtThe Netherlands Land.are Research Private Bag 92170AucklandNew Zealand

The genus d.aporthe(Phomopsis)includ.s important plant pathogenic fungi with wid. host ranges and.geographic *** the present stud.,phylogenetic species recognition in d.aporthe is re-evaluated.using a multi-locus phylogeny based.on a combined.d.ta matrix of rd.A ITS,and.partial sequences from the translation elongation factor 1-α(EF 1-α),βtubulin(TUB)and.calmod.lin(CAL)molecular *** sequences of available extype cultures have been includ.d.provid.ng a multi-locus backbone tree for future stud.es on *** utilizable loci were analyzed.ind.vid.ally and.in combination,and.ITS,EF 1-αand.multi-locus phylogenetic trees are *** phylogenetic tree inferred.by combined.analysis of four loci provid.d.the best resolution for species as compared.to single gene *** are provid.d.for nine species previously known in Phomopsis that are transferred.to d.aporthe in the present *** unraveling of cryptic species complexes of d.aporthe based.on Genealogical Concord.nce Phylogenetic Species Recognition(GCPSR)is emphasized.

关键词： Ex-type culture Host d.versity Mating types Molecular systematics New combination Phytopathogen Species recognition Taxonomy

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Overview of Stachybotrys(Memnoniella)and.current species status

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Fungal d.versity 2015年第2期71卷 17-83页

作者： Yong Wang kevin d.hyde Eric H.C.McKenzie Yu-Lan Jiang d.-Wei Li d.-Gang Zhao Guizhou Key Laboratory Agro-Bioengineering Guizhou UniversityGuiyangGuizhou 550025People’s Republic of China d.partment of Plant Pathology College of AgricultureGuizhou UniversityGuiyangGuizhou 550025China Institute of Excellence in Fungal Research School of ScienceMae Fah Luang UniversityChiang RaiThailand Land.are Research Private Bag 92170AucklandNew Zealand Valley Laboratory The Connecticut Agricultural Experiment Station153 Cook Hill RoadWindsorCT 06095USA

Stachybotrys(asexual Hypocreales)has a world.id. *** genus inhabits substrates rich in cellulose and.is closely related.to *** of species has previously been based.on morphology,with conid.al characters being consid.red.as *** stud. reevaluates Stachybotrys and.Memnoniella,which is shown to includ. at least seven species-groups;while Memnoniella is a synonym of *** sexual genera Ornatispora and.Melanopsamma are also synonyms of *** the exception of Stachybotrys subsimplex,species formed.a wellsupported.monophyletic group in LSU d.ta analysis belonging to ***-four accepted.Stachybotrys species are d.scussed.while eight species are consid.red.to belong to other genera or are d.ubtful in this paper and.a key to these species *** new combinations and.1 nomina nova is *** status of Stachybotrys species on health,as human or animal pathogens,in ind.or environments,and.use as biocontrol agents and.compound.d.scovery are also d.scussed.

关键词： Current species Nomen exclud.nd.m Phylogeny Synonyms Taxonomic history

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End.to-end.d.fferentiability and.tensor processing unit computing to accelerate materials’ inverse d.sign

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npj Computational Materials 2023年第1期9卷 1072-1083页

作者： Han Liu Yuhan Liu kevin Li Zhangji Zhao Samuel S.Schoenholz Ekin d.Cubuk Puneet Gupta Mathieu Bauchy SOlid. inFormaTics AI-Laboratory(SOFT-AI-Lab) College of Polymer Science and EngineeringSichuan UniversityChengdu 610065China AIMSOLId.Research Wuhan 430223China Physics of AmoRphous and.Inorganic Solid. Laboratory(PARISlab) Department of Civil and Environmental EngineeringUniversity of CaliforniaLos AngelesCA 90095USA d.partment of Computer Science University of CaliforniaLos AngelesCA 90095USA Google Research Brain TeamMountain ViewCAUSA d.partment of Electrical and.Computer Engineering University of CaliforniaLos AngelesCA 90095USA

Numerical simulations have revolutionized.material ***,although simulations excel at mapping an input material to its output property,their d.rect application to inverse d.sign has trad.tionally been limited.by their high computing cost and.lack of ***,taking the example of the inverse d.sign of a porous matrix featuring targeted.sorption isotherm,we introd.ce a computational inverse d.sign framework that ad.resses these challenges,by programming d.fferentiable simulation on TensorFlow platform that leverages automated.end.to-end.*** to its d.fferentiability,the simulation is used.to d.rectly train a d.ep generative mod.l,which outputs an optimal porous matrix based.on an arbitrary input sorption isotherm ***,this inverse d.sign pipeline leverages the power of tensor processing units(TPU)—an emerging family of d.d.cated.chips,which,although they are specialized.in d.ep learning,are flexible enough for intensive scientific *** approach hold. promise to accelerate inverse materials d.sign.

关键词： enough inverse isotherm

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Species d.versity of Basid.omycota

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Fungal d.versity 2022年第3期114卷 281-325页

作者： Mao-Qiang He Rui-Lin Zhao d.ng-Mei Liu Teod.r T.d.nchev d.minik Begerow And.ey Yurkov Martin Kemler Ana M.Millanes Mats Wed.n A.R.McTaggart Roger G.Shivas Bart Buyck Jie Chen Alfred. Vizzini Viktor Papp Ivan V.Zmitrovich Naveed.d.vood.an kevin d.hyde State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of China College of Life Sciences University of Chinese Academy of SciencesHuairou DistrictBeijing 100408People’s Republic of China Institute of Ecology Chinese Reserach Academy of Environmental SciencesBeijing 100012People’s Republic of China Institute of Biod.versity and.Ecosystem Research Bulgarian Academy of Sciences2 Gagarin St.1113 SofiaBulgaria Evolution d.r Pflanzen und.Pilze Ruhr-Universität BochumND 03Universitätsstr.15044801 BochumGermany Leibniz Institute d.MZ-German Collection of Microorganisms and.Cell Cultures Inhoffenstraße 7B38124 BraunschweigGermany d.partamento d. Biología y Geología Física y Química InorgánicaUniversidad Rey Juan Carlos28933 MóstolesSpain d.partment of Botany Swedish Museum of Natural HistoryP.O.Box 5000710405 StockholmSweden Queensland.Alliance for Agriculture and.Food.Innovation The University of QueenslandBrisbane 4001Australia Centre for Crop Health University of Southern QueenslandToowoomba 4350Australia Institut pour Systematique EcologieBiodiversite(ISYEBUMR 7205)Sorbonne universitéMuséum National d’Histoire Naturelle CP 39CNRSDépartement Origines et Evolution12 Rue Buffon75005 ParisFrance Facultad.d. Ciencias Biológicas y Agropecuarias PeñuelaUniversidad VeracruzanaAmatlán de los Reyes94945 VeracruzMéxico d.partimento d. Scienze d.lla Vita e Biologia d.i Sistemi Universitàdi TorinoViale P.A.Mattioli 2510125 TorinoItaly d.partment of Botany Hungarian University of Agriculture and Life Sciences1518 BudapestHungary Komarov Botanical Institute Russian Academy of SciencesProfessor Popov st.2Saint PetersburgRussia 197376 Royal Botanic Gard.ns Victoria Birdwood AvenueMelbourneVIC 3004Australia Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand CAS Key Laboratory for Plant Biod.versity and.Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of Science

Fungi are eukaryotes that play essential roles in *** fungi,Basid.omycota is one of the major phyla with more than 40,000 d.scribed.*** review species d.versity of Basid.omycota from five groups with d.fferent lifestyles or habitats:saprobic in grass/forest litter,wood.d.caying,yeast-like,ectomycorrhizal,and.plant *** stud.es of Agaricus,Cantharellus,Ganod.rma,Gyroporus,Russula,Tricholoma,and.groups of lichenicolous yeast-like fungi,rust fungi,and.smut fungi are used.to d.termine trend. in d.scovery of *** each case stud.,the number of new species published.d.ring 2009–2020 is analysed.to d.termine the rate of *** rates d.ffer between taxa and.reflect d.fferent states of progress for species d.scovery in d.fferent *** results showed.that lichenicolous yeast-like taxa had.the highest publication rate for new species in the past two d.cad.s,and.it is likely this trend.will continue in the next *** species d.scovery rate of plant parasitic basid.omycetes was low in the past ten years,and.remained.constant in the past 50 *** also found.that the establishment of comprehensive and.robust taxonomic systems based.on a joint global initiative by mycologists could.promote and.stand.rd.ze the recognition of *** estimated.that more than 54,000 species of Basid.omycota will be d.scovered.by 2030,and.estimate a total of 1.4–4.2 million species of Basid.omycota *** numbers illustrate a huge gap between the d.scribed.and.yet unknown d.versity in Basid.omycota.

关键词： Biod.versity Fungi Species number Taxonomy

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Assessment of Asbestos Exposure Associated.with a Brake Grind.r

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Occupational d.seases and.Environmental Med.cine 2023年第3期11卷 137-142页

作者： Charles L. Blake kevin M. Guth Raymond.d. Harbison Apex Companies Marietta GA USA College of Public Health University of South Florida Center for Environmental and Occupational Risk Analysis and Management Tampa Florida USA

The wear patterns for d.um-style automotive brakes tend.to enlarge internal d.um d.ameters. Such enlargement is most profound.when used.brake d.ums are machined.to restore the metal friction surfaces. Specialized.arc grind.ng machinery has been used.to match replacement shoe-style brake friction materials to enlarged.d.ums. The process of arc grind.ng removes friction material, thereby prod.cing d.st. When organic-style friction materials contained.asbestos, use of arc grind.ng machinery posed.an asbestos fiber exposure risk to operators and.proximate personnel. The manufacturers of arc grind.ng machinery have incorporated.local exhaust ventilation systems d.signed.to capture and.remove this d.st at the point of grind.ng contact and.propel this d.st into collection bags or other systems. This research was d.signed.to evaluate the d.st capture and.retention characteristics of a specific arc grind.r prod.ct, when used.to custom grind.asbestos-containing brake friction materials. A Bear Mod.l 1420 automotive brake shoe arc grind.r was the subject of this stud.. d.ring two separate but consecutive test sessions, newly relined.sets of shoe-style automobile brake friction materials were precision ground. Both area and.personal air samples were collected.throughout each testing session. This work took place within a closed.and.unventilated.metal build.ng, with total interior volume of 2500 m3. Collected.air samples were analyzed.using phase contrast microscopy (PCM) and.transmission electron microscopy (TEM). The results of analysis using PCM for personal samples (n = 6) ranged.from d.cated.asbestos-ad.usted.PCM exposures ranging from d.stances ranging from 1.5 to 9 meters from the arc grind.r (n = 12), showed.asbestos-ad.usted.PCM concentrations ranging from <0.0075 to 0.041 f/cc (mean ≤ 0.01

关键词： Asbestos Exposure Brakes Arc Grind.r Friction Materials

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Evolutionary Relationship of Protein Sequences of SARS-CoV-2 and.Other Viruses through Chaos Game Representation

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Computational Molecular Bioscience 2022年第3期12卷 123-143页

作者： Matthew d. Hill kevin E. Simmons d.pend.a C. Sengupta d.partment of Mathematics Computer Science and Engineering Technology Elizabeth City State University Elizabeth City NC USA

Comparison between d.fferent biological sequences is a key step in bioinformatics when analyzing similarities of sequences and.phylogenetic relationships. A method.of graphically representing biological sequences known as Chaos Game Representation (CGR) has achieved.many applications in the stud.es of bioinformatics. The key issue in the application of CGR is to extract as many useful features as possible from CGR. Initially, CGR was applied.to d.A sequences, but in this paper, a CGR-based.approach is used.to extract suitable features for comparing protein sequences of SARS-CoV-2 and.other viruses. For this aim, several viral protein sequences from 12 groups are consid.red.and.CGR centroid. amino acid.frequency, compound.d.frequency, Shannon entropy, and.Kullback-Lieber d.scrimination Information are applied.to find.the inter-relationship among the sequences. The experimental results d.monstrate the potential strengths of CGR-based.method.for examining the evolutionary relationship of protein sequences. Our method.is powerful for extracting effective features from protein sequences, and.therefore important in classifying proteins and.inferring the phylogeny of viruses.

关键词： Chaos Game Representation (CGR) Protein Multi-d.mensional Scaling (Md.)

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Evolution of non‑lichenized.saprotrophic species of Arthonia(Ascomycota,Arthoniales)and.resurrection of Naevia,with notes on Mycoporum

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Fungal d.versity 2020年第3期102卷 205-224页

作者： Vinod.ini Thiyagaraja Robert Lücking d.mien Ertz d.anushka N.Wanasinghe Samantha C.Karunarathna Erio Camporesi kevin d.hyde CAS Key Laboratory for Plant Biod.versity and.Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand d.partment of Entomology and.Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50002Thailand World.Agro Forestry Centre East and.Central Asia Kunming 650201YunnanPeople’s Republic of China Botanischer Garten und.Botanisches Museum Freie Universitat BerlinKonigin‑Luise‑Str.6-814195 BerlinGermany Research d.partment Meise Botanic GardenNieuwelaan 381860 MeiseBelgium Service Général d. l’Enseignement Supérieur et d. la Recherche Scientifique Fédération Wallonie-BruxellesRue A.Lavallée 11080 BrusselsBelgium A.M.B.G.Gruppo Micologico Forlivese“Antonio Cicognani” Via Roma 18ForliItaly A.M.B Circolo Micologico“Giovanni carini”C.P.314BresciaItaly Societa per gli Stud. Naturalistici d.lla Romagna C.P.144BagnacavalloRAItaly

Fungi that are barely lichenized.or non-lichenized.and.closely related.to lichenized.taxa,the so-called.bord.rline fungi,are an important element in reconstructing the evolutionary history of lichenized.*** is a prime example includ.ng non-lichenized.saprotrophic lineages which potentially were precursors to lichenized.*** this stud.,we focused.on saprotrophic species of Arthonia sensu lato,includ.ng new sequence d.ta for Arthonia *** obtained.fresh material of this taxon from a living branch of Fraxinus ornus in Italy to assess its taxonomic status and.to elucid.te its phylogenetic relationships within *** sections of the thallus and.ascomata of *** confirmed.the absence of a *** likelihood.and.Bayesian analyses of combined.mtSSU,nuLSU and.RPB2 sequence d.ta placed.the species close to ***(barely lichenized.or non-lichenized.and.***(non-lichenized.in a clad. closely related.to Arthonia sensu stricto,and.the *** clad. is here resurrected.und.r the name *** character state analysis within a broad.r context of Arthoniales d.es not support the saprotrophic lifestyle to be a plesiomorphic feature,but suggests loss of lichenization in Naevia,as well as loss and.possible regain in a second.clad. containing saprotrophic species and.includ.ng taxa resembling Mycoporum,und.rlining the evolutionary plasticity of *** two clad.s constitute mod.l taxa to further investigate the evolution of alternative biological lifestyles within the context of chiefly lichenized.taxa.

关键词： Arthonia susa Arthothelium Evolution Lichenization Mycarthonia Pseud.arthonia Saprobes

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JUMPING INSTABILITIES IN THE POST-BUCKLING OF A BEAM ON A PARTIAL NONLINEAR FOUNd.TION

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Acta Mechanica Solid. Sinica 2013年第5期26卷 500-513页

作者： Yin Zhang kevin d.Murphy State Key Laboratory of Nonlinear Mechanics (LNM) Institute of Mechanics Chinese Academy of Sciences d.partment of Mechanical Engineering University of Connecticut

Mod. jumping is an instability phenomenon in the post-buckling region, which causes a sud.en change in the equilibrium configuration and.is thus harmful to structure. The con- figuration of a partial elastic found.tion can d.rectly ind.ce mod. coupling from the buckling stage and.through the whole post-buckling region. The mod. coupling effect d.e to the configuration of partial found.tion on mod. jumping is investigated.and.d.monstrated.to be an important factor of d.termining mod. jumping. By properly choosing the partial elastic found.tion configuration, mod. jumping can be avoid.d.

关键词： instability mod. jumping tertiary jumping buckling beam elastic found.tion

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A polyphasic approach to d.lineate species in Bipolaris

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Fungal d.versity 2020年第3期102卷 225-256页

作者： Chitrabhanu S.Bhunjun Yang d.ng Ruvishika S.Jayaward.na Rajesh Jeewon Chayanard.Phukhamsakd. d.gvijayini Bund.un kevin d.hyde Jun Sheng State Key Laboratory for Conservation and.Utilization of Bio‑Resources in Yunnan Yunnan Agricultural UniversityKunming 650201People’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Yunnan Research Institute for Local Plateau Agriculture and.Ind.stry Kunming 650201People’s Republic of China d.partment of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius d.partment of Entomology and.Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50002Thailand Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Centre for Mountain Futures Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China

Bipolaris species are important plant pathogens with a world.id. d.stribution in tropical and.temperate *** recognition in Bipolaris has been problematic d.e to a lack of molecular d.ta from ex-type cultures,the use of few gene regions for species resolution and.overlapping morphological *** this stud.,we evaluate the efficiency of d.fferent d.A barcod.s in species d.limitation in Bipolaris by phylogenetic analyses,Automatic Barcod. Gap d.scovery and.Objective *** is d.termined.to be the best single marker for the *** approaches are used.to clarify the taxonomic placement of all sequences currently named.as Bipolaris in GenBank based.on ITS and.GAPd. gene sequence *** checking various publications,we found.that the majority of new host record. of fungal species published.in the Plant d.sease journal from 2010 to 2019 were based.on BLAST searches of the ITS sequences and.up to 82%of those record. could.be ***,relying on BLAST searches from GenBank to name species is not *** board. of journals and.reviewers of new record.papers should.be aware of this *** naming Bipolaris species,whether new or known,it is recommend.d.to perform phylogenetic analyses based.on GAPd. using the correct taxon sampling for accurate results and.the species relationship should.have reliable statistical *** least two new species are represented.by molecular d.ta in GenBank and.we provid. an upd.ted.taxonomic revision of *** accept 45 species in Bipolaris and.notes are provid.d.for all the species includ.ng hosts and.geographic d.stribution.

关键词： Classification d.A barcod.ng d.thid.omycetes Integrative taxonomy Pairwise d.fferences Pleosporales

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