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Benthic microbial biogeography along the continental shelf shaped by substrates from the Changjiang River plume

Acta Oceanologica Sinica 2022年第1期41卷 118-131页

作者： Yongjun Wei Shan Jiang Lingmin Tian Liping Wei Jie Jin juan severino pino ibanhez Yan Chang Xiaodao Wei Ying Wu Key Laboratory of Advanced Drug Preparation Technologies of Ministry of Education School of Pharmaceutical SciencesZhengzhou UniversityZhengzhou 450001China State Key Laboratory of Estuarine and Coastal Research East China Normal UniversityShanghai 200241China Department of Food Science and Engineering Jinan UniversityGuangzhou 510632China Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems South China Botanical GardenChinese Academy of SciencesGuangzhou 510650China School of Natural Sciences Trinity College DublinDublin 2Ireland Instituto de Investigacions Marinas Consejo Superior de Investigaciones CientificasVigo 36208Spain Institute of Eco-Chongming East China Normal UniversityShanghai 202162China

Coastal zones are active reactors of continental material including that transported by rivers via a series of microbiota-mediated reactions. Nevertheless, current knowledge of the ecology and functioning of the microbiota in coastal areas affected by large riverine inputs remains insufficient on a global scale. Here, an investigation on sediment microbial composition, including taxonomy and metabolic network, as well as their relationship with major benthic reaction substrates, namely carbon, nitrogen, sulphur and phosphorus, was conducted in the continental shelf affected by the spread of the Changjiang River plume. Surface sediment samples(48 samples)were collected during March 2018, obtaining a mean Operational Taxonomic Units(OTUs) number of 3 ***, Acidobacteria and Actinobacteria were abundant phyla in the studied sediments. Bray-Curtis distance analysis classified the 48 samples into 4 clusters(MG1 to MG4) at the phylum-level. MG1 and MG2 are found near the river mouth, receiving substantial land-derived particles from the Changjiang River ***-attached microbes may be settled in these regions and influenced the observed sediment microbial diversity and biomass, e.g., increased Crenarchaeota relative abundance. The relative enrichment of these two groups in heterotrophic microbes further suggests a reliance of benthic microbiota on substrates with terrestrial origin, particularly specialized on processing sulphur-rich substrates. Regions MG3 and MG4 are located in the outer margin of the area affected by the Changjiang River plume, mainly fed by settling pelagic particles from phytoplankton. Compared to MG1 and MG2, a significant increase in the abundance of Thaumarcheota(phylumlevel) and Nitrosopumilus(genus-level) was found in MG3, suggesting nitrogen-related transformations as the key reactions to sustain microbial metabolism in this region. Coupled with the identified variations in the taxonomic composition, significant differenc

关键词： benthic microbiota biogeography benthic substrate Changjiang River plume East China Sea Yellow Sea

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Denitrification-nitrification process in permeable coastal sediments: An investigation on the effect of salinity and nitrate availability using flow-through reactors

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Acta Oceanologica Sinica 2021年第9期40卷 1-12页

作者： Shan Jiang Mark Kavanagh juan severino pino Ibánhez Carlos Rocha State Key Laboratory of Estuarine and Coastal Research East China Normal University School of Natural Sciences Trinity College Dublin Trinity Centre for the Environment School of Natural Sciences Trinity College Dublin Instituto de Investigacións Mari?as Consejo Superior de Investigaciones Científicas

Permeable coastal sediments act as a reactive node in the littoral zone,transforming nutrients via a wide range of biogeochemical *** rates are controlled by abiotic factors,e.g.,salinity,temperature or solute ***,a series of incubation experiments,using flow-through reactors,were conducted to simulate the biogeochemical cycling of nitrate (NO3~?) and phosphorus (P) in permeable sediments under differentNO3~?availability conditions (factor I) along a salinity gradient (admixture of river and seawater,factor II).In an oligotrophic scenario,i.e.,unamendedNO3~?concentrations in both river and seawater,sediments acted as a permanent net source ofNO3~?to the water *** peak production rate occurred at an intermediate salinity(20).IncreasingNO3~?availability in river water significantly enhanced netNO3~?removal rates within the salinity range of 0 to 30,likely via the denitrification pathway based on the sediment microbiota *** this scenario,the most active removal was obtained at salinity of *** both river and seawater were spiked with NO3~?,the highest removal rate switched to the highest salinity (36).It suggests the salinity preference of theNO3~?removal pathway by local denitrifiers (e.g.,Bacillus and Paracoccus) and thatNO3~?removal in coastal sediments can be significantly constrained by the dilution relatedNO3~?*** with the obtained variation forNO3~?reactions,permeable sediments acted as a sink of soluble reactive P in all treatments,regardless of salinity andNO3~?input concentrations,indicating a possibility of P-deficiency for coastal water from the intensive cycling in permeable ***,the net production of dissolved organic carbon (DOC) in all treatments was positively correlated with the measuredNO3~?reaction rates,indicating that the DOC supply may not be the key factor forNO3~?removal rates due to the consumption by intensive aerobic *** the intensive pr

关键词： NO3−production and removal flow-through reactors salinity stable isotopes permeable sediments

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Microbiota of a seepage face at the mouth of a subterranean estuary:diversity,distribution and substrate dependence

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海洋学报:英文版 2023年第8期42卷 147-157页

作者： Yueming Wu Yongjun Wei juan severino pino Ibánhez Danqing Sun Kaiqi Lu Qianqian Wang Jian Li Shan Jiang State Key Laboratory of Estuarine and Coastal Research East China Normal UniversityShanghai 200241China School of Pharmaceutical Sciences Zhengzhou UniversityZhengzhou 450001China Instituto de Investigacións Mariñas Consejo Superior de Investigaciones CientíficasVigo 36208Spain School of Environmental Science and Engineering Southern University of Science and TechnologyShenzhen 518055China School of Environment and Safety Engineering Jiangsu UniversityZhenjiang 212013China

Subterranean estuaries,i.e.,the mixing zone between terrestrial groundwater and recirculated seawater,host a wide range of ***,field campaigns were conducted at the mouth of the subterranean estuary at the Sanggou Bay(Shandong Province,China)over four consecutive seasons at a seepage face(0−20 cm depth).The diversity of benthic microbiome was characterized via 16S rRNA gene sequencing and metagenomics,combined with physic-chemical parameters,e.g.,organic carbon,total nitrogen and sulfate contents in *** spring,the dominant species were assigned to the phylum *** opportunistic species was assigned to Acidobacteria,Actinobacteria and *** key components were identified to be species of the genera Pseudoalteromonas,Colwellia and Sphingobium,indicating the involvement of sediment microbiota in the degradation of sedimentary organic carbon,particularly that of pelagic origin,e.g.,phytoplankton detritus and bivalve *** spring,the microbial community was statistically similar along the depth profiles and among the three sampled *** spatial distributions were obtained in the remaining *** contrast,the dominant species assemblages varied significantly among seasons,with key genera being Thioprofundum and Nitrosopumilus during summer and autumn and Thioprofundum and Ilumatobacter during *** analysis revealed a seasonal shift in benthic nitrogen and sulfur metabolism associated with these variations in microbial community ***,our findings suggested that macro elements derived from pelagic inputs,particularly detrital phytoplankton,shaped the microbial community compositions at the seepage face,resulting in significant seasonal variations,while the influence of terrestrial materials transported by groundwater on the sediment microbiota at the seepage face found to be minor.

关键词： subterranean estuary microbiota seepage face seasonal variation substrate

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Sandy seepage faces as bioactive nitrate reactors:Biogeochemistry,microbial ecology and metagenomics

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Geoscience Frontiers 2023年第3期14卷 74-89页

作者： Shan Jiang Jie Jin Yongjun Wei Ying Wu Yixue Zhang Carlos Rocha juan severino pino Ibánhez Guosen Zhang Jing Zhang State Key Laboratory of Estuarine and Coastal Research East China Normal UniversityShanghai 200241China School of Pharmaceutical Sciences Key Laboratory of State Ministry of EducationKey Laboratory of Henan Province for Drug Quality Control and EvaluationCollaborative Innovation Center of New Drug Research and Safety EvaluationZhengzhou UniversityZhengzhou 450001HenanChina Biogeochemistry Research Group School of Natural SciencesTrinity College DublinDublin 2Ireland Instituto de Investigacións Mariñas Consejo Superior de Investigaciones Científicas(IIM-CSIC)Eduardo Cabello 636208 VigoSpain School of Oceanography Shanghai Jiao Tong UniversityShanghai 200040China

Subterranean estuaries are highly dynamic in processing dissolved inorganic nitrogen(DIN).Here we investigate DIN turnover in surface sediments(0–20 cm depth)at the higher,medium and lower intertidal of a seepage face,i.e.,the outer “mouth”of the subterranean estuary,during four consecutive seasons in Sanggou Bay,*** the studied period,ammonium(NH_(4)^(+))and nitrite(NO_(2)^(-))concentrations in the sampled porewaters did not vary significantly with depth or *** contrast,peaks in porewater nitrate(NO_(3)^(-))concentration and decreases in δ^(15)N-NO_(3)^(-) and δ^(18)O-NO_(3)^(-) were observed in the 15–20 cm depth(bottom)sediment,particularly during summer and *** with NO_(3)^(-) production,the sediment total nitrogen was also markedly peaking in the bottom layer of the studied seepage *** with abundant heterotrophic microbes in the sediment,this NO_(3)^(-) accumulation was linked to a reaction chain including organic matter decomposition,ammonification and *** winter,porewater enrichment in total nitrogen occurred closer to the surface of the seepage face but triggered also active NO_(3)^(-) *** pattern reinforced the importance of pelagic organic matter supply on NO_(3)^(-) *** the shallower depths of the seepage face(<12 cm),active net NO3removal occurred except in *** isotopic fractionation(δ^(15)N-NO_(3)^(-) and δ^(18)O-NO_(3)^(-) and metagenomic results revealed denitrification as the main pathway for NO_(3)^(-) *** assimilation from benthic primary producers may also consume a fraction of NO_(3)^(-) at the sediment water *** NO_(3)^(-) production and removal significantly varied in magnitude with season(13.6 to 6.2 nmol cm^(-3)h^(-1)).Substrate supply was the key driver for nitrate cycling,as evidenced by the high NO3production rate in spring by comparison to *** highest NO_(3)^(-) turnover rates were found in summer,suggesting the comb

关键词： Benthic microbiota Nitrate Stable isotopes Subterranean estuary Denitrification

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Student Perceptions of Computerized Tests

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英语考试研究 2010年第10期 53-58页

作者： juan pino-Silva

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Laparoscopic approach in gastrointestinal emergencies

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World Journal of Gastroenterology 2016年第9期22卷 2701-2710页

作者： Rosa M Jimenez Rodriguez juan José Segura-Sampedro Mercedes Flores-Cortés Francisco López-Bernal Cristobalina Martín Verónica pino Diaz Felipe Pareja Ciuro Javier Padillo Ruiz Department of Surgery Hospital Universitario Virgen del Rocio 41013 Sevilla Spain Hospital Universitario Son Espases 07010 Palma de Mallorca Spain

This review focuses on the laparoscopic approach to gastrointestinal emergencies and its more recent indications. Laparoscopic surgery has a specific place in elective procedures, but that does not apply in emergency situations. In specific emergencies, there is a huge range of indications and different techniques to apply, and not all of them are equally settle. We consider that the most controversial points in minimally invasive procedures are indications in emergency situations due to technical difficulties. Some pathologies, such as oesophageal emergencies, obstruction due to colon cancer, abdominal hernias or incarcerated postsurgical hernias, are nearly always resolved by conventional surgery, that is, an open approach due to limited intraabdominal cavity space or due to the vulnerability of the bowel. These technical problems have been solved in many diseases, such as for perforated peptic ulcer or acute appendectomy for which a laparoscopic approach has become a wellknown and globally supported procedure. On the other hand, endoscopic procedures have acquired further indications, relegating surgical solutions to a second place; this happens in cholangitis or pancreatic abscess drainage. This endoluminal approach avoids the need for laparoscopic development in these diseases. Nevertheless, new instruments and new technologies could extend the laparoscopic approach to a broader array of potentials procedures. There remains, however, a long way to go.

关键词： Minimally invasive surgery Gastrointestinal surgery Emergency surgery Digestive emergencies Abdominal emergencies

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Molecular epidemiology and putative origin of hepatitis C virus in random volunteers from Argentina

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World Journal of Gastroenterology 2013年第35期19卷 5813-5827页

作者： Noemí del pino José Raúl Oubia Francisco Rodríguez-Frías juan Ignacio Esteban María Buti Teresa Otero Josep Gregori Damir García-Cehic Silvia Camos María Cubero Rosario Casillas Jaume Guàrdia Rafael Esteban Josep Quer Apunlab Laboratories Institute of Medical Microbiology and Parasitology (IMPAM) UBA-CONICET Department of MicrobiologyParasitology and Immunology Faculty of Medicine University of Buenos Aires CIBER de Enfermedades Hepáticas y Digestivas (CIBERehd) del Instituto de Salud Carlos Ⅲ and Biochemistry Department Hospital Universitari Vall d’Hebrón (HUVH) CIBERehd del Instituto de Salud Carlos Ⅲ Autonomous University of Barcelona and Liver Unit Internal Medicine Lab. Malalties Hepatiques Vall d’Hebron Institut de Recerca (VHIR) Hospital Universitari Vall d’Hebrón (HUVH) Unitat de Diagnostic Molecular HUVH Liver Unit Internal Medicine Lab Malalties Hepatiques VHIR-HUVH Roche Diagnostics SL CIBERehd del Instituto de Salud Carlos Ⅲ Liver Unit Internal Medicine Lab MalaltiesHepatiques VHIR-HUVH Liver Unit and Biochemistry Department HUVH

AIM:To study the subtype prevalence and the phylogenetic relatedness of hepatitis C virus(HCV)sequences obtained from the Argentine general population,a large cohort of individuals was ***:Healthy Argentinian volunteers(n=6251)from 12 provinces representing all geographical regions of the country were *** parents or legal guardians of individuals younger than 18 years provided informed written consent for *** corresponding written permission from all municipal authorities was obtained from each city or town where subjects were to be *** RNA reverse transcription-polymerase chain reaction products were sequenced and phylogenetically *** 5’untranslated region(5’UTR)was used for RNA detection and initial genotype *** NS5B polymerase region,encompassing nt 8262-8610,was used for ***:An unexpectedly low prevalence of HCV infection in the general population(0.32%)was *** data contrasted with previous studies that reported rates ranging from 1.5%to 2.5%,mainly performed in selected populations of blood donors or vulnerable *** latter values are in keeping with the prevalence reported by the 2007 Argentinian HCV Consensus(approximately 2%).HCV subtypes weredistributed as follows:1a(25%),1b(25%),2c(25%),3a(5%),and 2j(5%).Two isolates ascribed either to genotype 1(5%)or to genotype 3(5%)by 5’UTR phylogenetic analysis could not be *** 1a sequences comprised a highly homogeneous population and clustered with United States ***1b sequences represented a heterogeneous population,suggesting that this genotype might have been introduced from different *** subtype 2c sequences clustered close to the 2c reported from Italy and Southern ***:HCV has a low prevalence of 0.32%in the studied general population of *** pattern of HCV introduction and transmission in Argentina appears to be a consequence of multiple events and different

关键词： Hepatitis C virus NS5B subtyping Molecular epidemiology Hepatitis C virus Argentina Hepatitis C virus 5’ untranslated region

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Current and emerging therapies for alcohol-associated hepatitis

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Liver Research 2023年第1期7卷 35-46页

作者： Francisco Idalsoaga Gustavo Ayares Luis Antonio Díaz Jorge Arnold María Ayala-Valverde David Hudson Marco Arrese juan Pablo Arab Department of Gastroenterology School of MedicinePontificia Universidad Catolica de ChileSantiagoChile Internal Medicine Service Hospital El PinoCritical Patient UnitClinica DavilaSantiagoChile Division of Gastroenterology Department of MedicineSchulich School of MedicineWestern University&London Health Sciences CentreLondonOntarioCanada Department of Epidemiology and Biostatistics Schulich School of MedicineWestern UniversityLondonOntarioCanada Alimentiv LondonOntarioCanada

Alcohol-related liver disease(ALD)encompasses a spectrum of diseases caused by excessive alcohol *** includes hepatic steatosis,steatohepatitis,variable degrees of fibrosis,cirrhosis,and alcohol-associated hepatitis(AH),the latter being the most severe acute form of the *** AH is associated with high mortality(reaching up to 30%e50%)at 90 *** cornerstone of ALD,and particularly AH,treatment continues to be abstinence,accompanied by support measures such as nutritional supplementation and management of alcohol withdrawal syndrome(AWS).In severe AH with model for end-stage liver disease(MELD)score21,corticosteroids can be used,especially MELD score between 25 and 39,where the highest benefit is *** key aspects of treatment include the early identification of infections and their associated management and the proper identification of potential candidates for liver *** development of new therapies based on the pathophysiology and mechanisms of liver injury are *** includes the modulation and management of the innate immune response,gut dysbiosis,bacterial translocation,and bacteria-derived products from the *** hold promise for the future of AH treatment.

关键词： Alcohol-associated hepatitis(AH) Alcohol-related liver disease(ALD) Alcohol use disorder(AUD) AUD treatment Nutritional therapy Steroids therapy Cirrhosis Fibrosis

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Socioeconomic Aspects for Coastal Mollusk Commercial Fishing in Costa Chica,Guerrero,Mexico

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Natural Resources 2018年第6期9卷 229-241页

作者： Lizeth Galeana-Rebolledo Rafael Flores-Garza juan Violante-Gonzalez Pedro Flores-Rodriguez Sergio Garcia-Ibanez Victor Landa-Jaime Arcadio Valdes-Gonzalez Centro de Ciencias de Desarrollo Regional Pino s/n.Col.El RobleAcapulcoMéxico Facultad Ecologia Marina Gran Via TropicalN°20Fraccionamiento Las PlayasAcapulcoMexico Departamento de Estudios para el Desarrollo Sustentable de Zonas Costeras San Patricio-MelaqueMexico Facultad de Ciencias Biologicas Universidad Autonoma de Nuevo LeonCiudad UniversitariaSan Nicolas de los GarzaMexico

An important part of the fishing activity in Mexico is carried out in the coastal strip and has a strong social, economic and ecological importance. In the state of Guerrero, mollusks fishing is coastal and craftwork activity focused on a small number of species and without information on biology and reproductive or ecological aspects for most species caught. This research was carried out in the Costa Chica region, Guerrero, Mexico and the aims were: 1) To analyze the socioeconomic features of cooperative societies of fishing production;and 2) To know the diversity of mollusks caught by coastal fishing and the species that have the greatest importance in fishing. From February to April 2013-2015, seven fish coop units, four piers and places where seafood is sold were visited. For the socio-economic analysis and the determination of the species that have more importance in the coastal fishing, a total of 67 surveys were applied. In order to determine the cast of species, the specimens captured by the fishermen were used, which were identified and counted. A total of 67 interviews were analyzed and an average of $1806.00 was estimated as weekly economic income just as a product of fishing, it was also estimated that on average the fishermen work 4.3 days a week. Fisheries cooperatives market most of their produce directly to restaurateurs and locals on the piers. Replacement of older adults by young fishermen from the same region was observed, most are adults between 22 and 39 years old. 25 species of mollusks of economic importance were registered for the coastal fishermen of the Costa Chica. Six species were identified as the main target for catching fishermen. The fishing of mollusks in Costa Chica is not subject to any type of control, which has led to overfishing reflected in the decline sizes and banks in populations of commercial importance.

关键词： Molluscs Coastal Fishing Socioeconomic Fisherman

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First Trimester Uterine Rupture: A Case Report on a Patient with Unsuspected Müllerian Duct Anomaly

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Open Journal of Obstetrics and Gynecology 2021年第7期11卷 917-921页

作者： Rosales H. Diego García B. Julián Valdes R. Enrique Cartallier Otone Rojas L. Daniel Valdes M. Enrique Montero S. juan Eliash D. Hector Universidad Andres Bello Santiago Chile Hospital El pino San Bernardo Chile Universidad de Chile Santiago Chile

Introduction: Mullerian malformations are a group of malformations that result from an alteration of embryonic development. Most cases are asymptomatic, however, in pregnant patients it has been associated with recurrent abortion or premature delivery. Case presentation: 12 + 2 weeks pregnant woman consulted for abdominal pain, vomiting and fever. During the study, a transvaginal ultrasound was performed, where two endometric cavities and a pregnancy in the right horn were observed. The evolution of the patient was torpid, reaching hypovolemic shock, resolved by an emergency laparotomy where the rupture of the right horn was found. Discussion: The bicornuate uterus is the consequence of a partial fusion of the paramesonephric ducts during the fetal development, resulting in two functional uterine horns. Patients with bicornuate uterus may be asymptomatic,

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