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Alterations of RNA Editing for the Mitochondrial ATP9 Gene in a New orf220-type Cytoplasmic Male-sterile Line of Stem Mustard （Brassica juncea var. tumida）

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Journal of Integrative Plant Biology 2007年第5期49卷 672-677页

作者： jing-hua Yang Laboratory of Genetic Resources & Functional Improvement for Horticultural Plants Department of Horticulture Zhejiang University Hangzhou 310029 China Laboratory of Horticultural Plant Growth Development & Biotechnology Ministry of Agriculture Zhejiang University Hangzhou 310029 China

RNA editing for the mitochondrlal ATP9 gene of encoding regions has been observed in both cytoplasmic malesterile and maintainer lines of stem mustard, where its editing capacity varied spatially and temporally in the cytoplasmic male sterility （CMS） line. There were four RNA editing sites for the mitochondrial ATP9 gene according to Its normal editing sites in mustard, of which three sites occurred as C-to-U changes and one as a U-to-C change. As a result, the hydrophobicity of deduced ATP9 protein was reduced due to the conversions at its 17th, 45th and 64th positions. Meanwhile, the conservation of deduced ATP9 protein was enhanced by changes at the 56th position. Loss of a specific editing site for ATP9 was observed in juvenile roots, senile roots, senile leaves and floret buds of the CMS line. Comparatively, complete RNA editing for ATP9 gene was retained in juvenile roots, juvenile leaves and floret buds of its maintainer line; however, the loss of a specific editing site for ATP9 gene occurred at senile roots and senile leaves in its maintainer line. These observations allow us to produce a hypothesis that the dysfunction of a specific mitochondrial gene arising from RNA editing could probably be a factor triggering CMS and organ senescence through unknown cross-talk pathways during development.

关键词： ATP9 Brassica juncea cytoplasmic male sterility RNA editing.

A VERTICAL 2-D NUMERICAL SIMULATION OF SUSPENDED SEDIMENT TRANSPORT

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Journal of Hydrodynamics 2007年第2期19卷 217-224页

作者： ZHANG jing-xin LIU hua Department Of Engineering Mechanics Shanghai Jiaotong University Shanghai 200240 China

Numerical simulation of sediment transport and bed evolution has become an important technique in the sediment research. In this article, a numerical model of suspended sediment transport was proposed, which was established in the vertical σ coordinate for fitting the free surface and bottom. In the research of the sediment transport, the predominant factors were found to be the eddy diffusion, the settling velocity, the bed condition and so on. By the aid of the model in the article, the contribution of the Rouse parameter to the vertical profile of sediment concentration was clarified, which was identical to the theoretical results. In the comparison of the numerical results with laboratory data, the agreement between experimental data and numerical results was reached except for some data. And the possible reasons for the disagreement were discussed.

关键词： suspended sediment transport 2-D numericalmodel σ coordinate

On Dynamics of Infinitely Generated Contractive Mapping Systems on pZ_p

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Acta Mathematica Sinica,English Series 2020年第6期36卷 651-662页

作者： jing hua YANG Yun Peng XIAO Department of Mathematics College of SciencesShanghai UniversityShanghai 200444P.R.China

Let p≥2 be a prime number and Zp be the ring of p-adic *** G be a semigroup generated by infinitely many contractive maps on p *** is shown that if G satisfies the open tiling conditions,then there exists a shift transformation on the limit set of G and the shift transformation is ergodic with respect to the Haar measure on p *** an application,we can generalize p-adic Khinchin’s Theorem and p-adic Lochs’Theorem to any infinitely generated semigroup by use of the ergodicity of the shift transformation.

关键词： Contractive maps ergodic limit sets p-adic continued fractions

High-resolution Absorption Spectra of Acetylene in 142.8-152.3 nm

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Chinese Journal of Chemical Physics 2008年第5期21卷 415-420页

作者： Ya-hua Hu Chen Zhen jing-hua Dai Xiao-guo Zhou Shi-lin Liu Hefei National Laboratory for Physical Sciences at Microscale Department of Chemical Physics University of Science and Technology of China Hefei 230026 China

The absorption spectra of acetylene molecules was measured under jet-cooled conditions in the wavelength range of 142.8-152.3 nm, with a tunable and highly resolved vacuum ultraviolet （VUV） laser generated by two-photon resonant four wave difference frequency mixing processes. Due to the sufficient vibrational and rotational cooling effect of the molecular beam and the higher resolution VUV laser, the observed absorption spectra exhibit more distinct spectral features than the previous works measured at room temperature. The major three vibrational bands are assigned as a C-C symmetry stretching vibrational progress （v2=0.2） of the C^1Πu state of acetylene. The observed shoulder peak at 148,2 nm is assigned to the first overtone band of the trans-bending mode V4 of the C^1Πu state of acetylene. Additionally, the two components, 4^20（μ^1Π） and 4^20（k^1Πu）, are suggested to exhibit in the present absorption spectra, due to their Renner-Teller effect and transition selection rule. All band origins and bandwidths are obtained subsequently, and it is found that bandwidths are broadened and lifetimes decrease gradually with the excitation of vibration.

关键词： Acetylene Vacuum ultraviolet Absorption spectrum

Is ABP1 an Auxin Receptor Yet？

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Molecular Plant 2011年第4期4卷 635-640页

作者： jing-hua Shi Zhen-Biao Yang Center for Plant Cell Biology Department of Botany and Plant Sciences University of California Riverside CA 92521 USA

AUXIN BINDING PROTEIN 1 （ABP1） has long been proposed as an auxin receptor to regulate cell expansion. The embryo lethality of ABP1-null mutants demonstrates its fundamental role in plant development, but also hinders investigation of its involvement in post-embryonic processes and its mode of action. By taking advantage of weak alleles and inducible systems, several recent studies have revealed a role for ABP1 in organ development, cell polarization, and shape formation. In addition to its role in the regulation of auxin-induced gene expression, ABP1 has now been shown to modulate non-transcriptional auxin responses. ABP1 is required for activating two antagonizing ROP GTPase signaling pathways involved in cytoskeletal reorganization and cell shape formation, and participates in the regulation of clathrinmediated endocytosis to subsequently affect PIN protein distribution. These exciting discoveries provide indisputable evidence for the auxin-induced signaling pathways that are downstream of ABP1 function, and suggest intriguing mechanisms for ABPl-mediated polar cell expansion and spatial coordination in response to auxin.

关键词： Hormonal regulation hormone biology receptors signal transduction cell signaling.

Generalized Wigner Functions for Damped Systems in Deformation Quantization

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Communications in Theoretical Physics 2007年第2X期48卷 255-260页

作者： HENG Tai-hua jing Si-Cong Department of Modern Physics University of Science and Technology of China Hefei 230026 China

Quantization of damped systems usually gives rise to complex spectra and corresponding resonant states, which do not belong to the Hilbert space. Therefore, the standard form of calculating Wigner function （WF） does not work for these systems. In this paper we show that in order to let WF satisfy a ,-genvalue equation for the damped systems, one must modify its standard form slightly, and this modification exactly coincides with the results derived from a ＊-Exponential expansion in deformation quantization.

关键词： Wigner function damped system deformation quantization

CR-Morph: Controllable Rigid Morphing for 2D Animation

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Journal of Computer Science & Technology 2019年第5期34卷 1109-1122页

作者： Wen-Wu Yang jing hua Kun-Yang Yao School of Computer and Information Engineering Zhejiang Gongshang UniversityHangzhou 310012China Department of Computer Science Wayne State UniversityMichigan 48202U.S.A.

This paper presents a rigidity-preserving morphing technique that blends a pair of 2D shapes in a controllable manner. The morphing is controllable in two aspects: 1) motion dynamics in the interpolation sequences can be effectively enhanced through an intuitive skeleton control and 2) not only the boundaries but also the interior features of the source and target shapes are precisely aligned during the morphing. We introduce a new compatible triangulation algorithm to decompose the source and target shapes into isomorphic triangles. Moreover, a robust and motion-controllable rigiditypreserving transformation scheme is proposed to blend the compatible triangulations, ultimately leading to a morphing sequence which is appearance-preserving and with the desired motion dynamics. Our approach constitutes a powerful and easy-to-use morphing tool for two-dimensional animation. We demonstrate its versatility, effectiveness and visual accuracy through a variety of examples and comparisons to prior work.

关键词： compatible triangulation disc-based interpolation rigid morphing skeleton-based dynamics

A VERTICAL 2D MATHEMATICAL MODEL FOR HYDRODYNAMIC FLOWS WITH FREE SURFACE IN σ COORDINATE

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Journal of Hydrodynamics 2006年第1期18卷 82-90页

作者： ZHANG jing-xin LIU hua XUE Lei-ping School of Naval Architecture Ocean and Civil Engineering Shanghai Jiaotong University Shanghai 200030 China

Numerical models with hydrostatic pressure have been widely utilized in studying flows in rivers, estuaries and coastal areas. The hydrostatic assumption is valid for the large-scale surface flows where the vertical acceleration can be ignored, but for some particular cases the hydrodynamic pressure is important. In this paper, a vertical 2t） mathematical model with non-hydrostatic pressure was implemented in the σ coordinate. A fractional step method was used to enable the pressure to be decomposed into hydrostatic and hydrodynamic components and the predictor-corrector approach was applied to integration in time domain. Finally, several computational cases were studied to validate the importance of contributions of the hydrodynamic pressure.

关键词： vertical 2D model free surface flow semiimplicit non-hydrostatic

Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice

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Molecular Plant 2012年第1期5卷 281-290页

作者： Hong-jing Li Xiang-hua Li jing-hua Xiao Rod A.Wing Shi-Ping Wang National Key Laboratory of Crop Genetic Improvement National Center of Plant Gene Research(Wuhan)Huazhong Agricultural UniversityWuhan 430070China Arizona Genomics Institute School of Plant SciencesBIO5 InstituteUniversity of ArizonaTucsonAZ 85721USA

The rice disease resistance （R） gene Xa3/Xa26 （having also been named Xa3 and Xa26） against Xanthomonas oryzae pv. oryzae （Xoo）, which causes bacterial blight disease, belongs to a multiple gene family clustered in chromosome 11 and is from an AA genome rice cultivar （Oryza sativa L.）. This family encodes leucine-rich repeat （LRR） receptor kinase- type proteins, Here, we show that the orthologs （alleles） of Xa3/Xa26, Xa3/Xa26-2, and Xa3/Xa26-3, from wild Oryza spe- cies O. officinalis （CC genome） and O. minuta （BBCC genome）, respectively, were also R genes against Xoo. Xa3/Xa26-2 and Xa3/Xa26-3 conferred resistance to 16 of the 18 Xoo strains examined. Comparative sequence analysis of the Xa3/Xa26 families in the two wild Oryza species showed that Xa3/Xa26-3 appeared to have originated from the CC genome of O. minuta. The predicted proteins encoded by Xa3/Xa26, Xa3/Xa26-2, and Xa3/Xa26-3 share 91-99% sequence identity and 94-99% sequence similarity. Transgenic plants carrying a single copy of Xa3/Xa26, Xa3/Xa26-2, or Xa3PXa26-3, in the same genetic background, showed a similar resistance spectrum to a set of Xoo strains, although plants carrying Xa3/Xa26-2 or Xa3/Xa26-3 showed lower resistance levels than the plants carrying Xa3/Xa26. These results suggest that the Xa3/Xa26 locus predates the speciation of A and C genome, which is approximately 7.5 million years ago. Thus, the resistance spec- ificity of this locus has been conserved for a long time.

关键词： Bacterial blight broad-spectrum resistance durable resistance Oryza officinalis Oryza minuta Oryza sativa.