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Conservation genomic investigation of an endangered conifer,Thuja sutchuenensis,reveals low genetic diversity but also low genetic load

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Plant Diversity 2024年第1期46卷 78-90页

作者： Tongzhou Tao Richard IMilne jialiang li Heng Yang Shiyang Wang Sihan Chen Kangshan Mao Key Laboratory for Bio-Resource and Eco-Environment of Ministry of Education&Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station College of Life ScienceSichuan UniversityChengduChina Institute of Molecular Plant Science School of Biological ScienceUniversity of EdinburghEdinburgh EH93BFUK College of Science Tibet UniversityLhasa 850000Xizang Autonomous RegionPR China

Endangered species generally have small populations with low genetic diversity and a high genetic load.Thuja sutchuenensis is an endangered conifer endemic to southwestern China.It was once considered extinct in the wild,but in 1999 was rediscovered.However,little is known about its genetic load.We collected 67 individuals from five wild,isolated T.sutchuenensis populations,and used 636,151 SNPs to analyze the level of genetic diversity and genetic load in T.sutchuenensis to delineate the conservation units of T.sutchuenensis,based on whole transcriptome sequencing data,as well as target capture sequencing data.We found that populations of T.sutchuenensis could be divided into three groups.These groups had low levels genetic diversity and were moderately genetically differentiated.Our findings also indicate that T.sutchuenensis suffered two severe bottlenecks around the Last Glaciation Period and Last Glacial Maximum.Among Thuja species,T.sutchuenensis presented the lowest genetic load and hence might have purged deleterious mutations efficiently through purifying selection.However,distribution of fitness effects analysis indicated a high extinction risk for T.sutchuenensis.Multiple lines of evidence identified three management units for T.sutchuenensis.Although T.sutchuenensis possesses a low genetic load,low genetic diversity,suboptimal fitness,and anthropogenic pressures all present an extinction risk for this rare conifer.This might also hold true for many endangered plant species in the mountains all over the world.

关键词： Sichuan Arborvitae Genetic load Deleterious mutations Demographic history Conservation genomics

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Across two phylogeographic breaks: Quaternary evolutionary history of a mountain aspen (Populus rotundifolia) in the Hengduan Mountains

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Plant Diversity 2024年第3期46卷 321-332页

作者： Jieshi Tang Xiaoyan Fan Richard I.Milne Heng Yang Wenjing Tao Xinran Zhang Mengyun Guo jialiang li Kangshan Mao Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education College of Life SciencesState Key Laboratory of Hydraulics and Mountain River EngineeringSichuan UniversityChengdu 610065PR China Institute of Molecular Plant Sciences University of EdinburghEdinburgh EH93JHUK School of Ecology and Environment Tibet UniversityLhasa 850000PR China

Biogeographical barriers to gene flow are central to plant phylogeography.In East Asia,plant distribution is greatly influenced by two phylogeographic breaks,the Mekong-Salween Divide and Tanaka-Kaiyong line,however,few studies have investigated how these barriers affect the genetic diversity of species that are distributed across both.Here we used 14 microsatellite loci and four chloroplast DNA fragments to examine genetic diversity and distribution patterns of 49 populations of Populus rotundifolia,a species that spans both the Mekong-Salween Divide and the Tanaka-Kaiyong line in southwestern China.Demographic and migration hypotheses were tested using coalescent-based approaches.limited historical gene flow was observed between the western and eastern groups of P.rotundifolia,but substantial flow occurred across both the Mekong-Salween Divide and Tanaka-Kaiyong line,manifesting in clear admixture and high genetic diversity in the central group.Wind-borne pollen and seeds may have facilitated the dispersal of P.rotundifolia following prevalent northwest winds in the spring.We also found that the Hengduan Mountains,where multiple genetic barriers were detected,acted on the whole as a barrier between the western and eastern groups of P.rotundifolia.Ecological niche modeling suggested that P.rotundifolia has undergone range expansion since the last glacial maximum,and demographic reconstruction indicated an earlier population expansion around 600 Ka.The phylogeographic pattern of P.rotundifolia reflects the interplay of biological traits,wind patterns,barriers,niche differentiation,and Quaternary climate history.This study emphasizes the need for multiple lines of evidence in understanding the Quaternary evolution of plants in topographically complex areas.

关键词： Chloroplast DNA Microsatellite Phylogeographic break Populus rotundifolia Quaternary history Wind direction

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Integrating Zeolite and Layered Double Hydroxide for Highly Selective Catalytic Production ofγ-Valerolactone

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CCS Chemistry 2024年第3期6卷 652-662页

作者： Mingkun Gao Guoju Yang Guangyuan He Risheng Bai jialiang li Yinghao liu Qiang Zhang Guangrui Chen Donghai Mei Jihong Yu State Key Laboratory of Inorganic Synthesis and Preparative Chemistry College of ChemistryInternational Center of Future ScienceJilin UniversityChangchun 130012 School of Materials Science and Engineering Tiangong UniversityTianjin 300387

The production ofγ-valerolactone(GVL)from biomass derivatives levulinic acid(LA)based on acidbase metallic catalysts offers a sustainable pathway to the synthesis of valuable chemicals and biofuels.However,the development of efficient metallic catalysts with tunable Lewis acid–base and Brønsted acid sites remains a challenge.Herein,for the first time,we integrated zeolite and layered double hydroxide(LDH),in a core–shell structure,wherein zeolite and CoFe-LDH provided the Brønsted acidic sites and Lewis acid sites,respectively.Meanwhile,oxygen vacancies(OV_(x))acting as Lewis bases were generated on the surface of LDH via Ga doping.An efficient cascade catalytic reaction from LA to GVL was successfully achieved over the designed Beta@LDH-OVx catalyst,affording a superior conversion of LA(>99.9%)and an impressive selectivity to GVL(89.18%).Importantly,the“memory effect”of LDH endowed the catalyst with excellent regeneration of metal active sites.Density functional theory calculations revealed that the introduced OVx facilitated the adsorption of carbonyl oxygen in LA and boosted the production of GVL through the synergistic effect of acid/base sites in the composite catalyst.This work presents a rational design route for the construction of multifunctional catalysts by coupling zeolites and LDHs for highly selective catalytic conversion of biomass.

关键词： zeolite layered double hydroxide oxygen vacancies biomass γ-valerolactone

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Dual occupations of sulfur induced band flattening and chemical bond softening in p-type S_(y)Co_(4)Sb_(12-2y)S_(2y) skutterudites

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Journal of Materiomics 2022年第1期8卷 88-95页

作者： jialiang li Xiaolian Zhang Haoqin Ma Bo Duan Guodong li Jiong Yang Hongtao Wang Houjiang Yang ling Zhou Pengcheng Zhai Hubei Key Laboratory of Theory and Application of Advanced Materials Mechanics Wuhan University of TechnologyWuhan430070China State Key Laboratory of Advanced Technology for Materials Synthesis and Processing Wuhan University of TechnologyWuhan430070China Materials Genome Institute Shanghai University99 Shangda RoadShanghai200444China

The electronegative filling in skutterudites not only broadened the scope of filling atoms,but also facilitated the preparation of p-type skutterudites.However,the introduction of a single sulfur atom in the Co_(4)Sb_(12) cannot be achieved without charge compensation through the traditional equilibrium method.In the present study,the dual occupations of S-atoms by self-charge compensation were shown as the most stable forms under high pressure,and a series of p-type S_(y)Co_(4)Sb_(12-2y)S_(2y) skutterudites was successfully prepared by high-pressure-high-temperature(HPHT)method.The electronic structures and transport properties of as-obtained materials were investigated,and the related mechanisms were explored.The results suggested that the presence of S-impurities led to flattening of the electronic band that led to a higher Seebeck coefficient.The S-doped Co_(4)Sb_(12) displayed lower elastic modulus,elastic constant,and Debye temperature,thus indicating the chemical bond softening in skutterudites.The thermal conductivities of S_(y)Co_(4)Sb_(12-2y)S_(2y) compounds reduced monotonously with the increase in Scontent.This study provides a new and promising avenue for optimizing the thermoelectric properties of p-type Co_(4)Sb_(12).

关键词： Electronegative filling skutterudites Self-charge compensation Band flattening Bond softening

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Molecular signatures of parallel adaptive divergence causing reproductive isolation and speciation across two genera

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The Innovation 2022年第3期3卷 98-104页

作者： Zefu Wang Yuanzhong Jiang Xiaoyue Yang Hao Bi jialiang li Xingxing Mao Yazhen Ma Dafu Ru Cheng Zhang Guoqian Hao Jing Wang Richard J.Abbott Jianquan liu State Key Laboratory of Grassland Agro-Ecosystem College of EcologyLanzhou UniversityLanzhou 730000China Key Laboratory for Bio-resource and Eco-environment of Ministry of Education College of Life SciencesSichuan UniversityChengdu 610065China Chengdu Institute of Biology Chinese Academy of SciencesChengdu 610041China Sichuan Tea College Yibin UniversityYibin 644000China School of Biology University of St AndrewsSt Andrews KY169THUK

Parallel evolution of reproductive isolation(PERI)provides strong evidence for natural selection playing a fundamental role in the origin of species.However,PERI has been rarely demonstrated for well established species drawn from different genera.In particular,parallel molecular signatures for the same genes in response to similar habitat divergence in such different lineages is lacking.Here,based on whole-genome sequencing data.

关键词： signature divergence Molecular

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Phylotranscriptomics of Swertiinae(Gentianaceae)reveals that key floral traits are not phylogenetically correlated

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Journal of Integrative Plant Biology 2023年第6期65卷 1490-1504页

作者： Chunlin Chen Brad R.Ruhfel jialiang li Zefu Wang Lushui Zhang Lei Zhang Xingxing Mao Ji Wang Dashan He Yue Luo Quanjun Hu Yuanwen Duan Xiaoting Xu Zhenxiang Xi Jianquan liu Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education&State Key Laboratory of Hydraulics and Mountain River Engineering College of Life SciencesSichuan UniversityChengdu 610065China Department of Ecology and Evolutionary Biology University of MichiganAnn ArborMichigan 48109USA Institute Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201China

Establishing how lineages with similar traits are phylogenetically related remains critical for understanding the origin of biodiversity on Earth.Floral traits in plants are widely used to explore phylogenetic relationships and to delineate taxonomic groups.The subtribe Swertiinae(Gentianaceae)comprises more than 350 species with high floral diversity ranging from rotate to tubular corollas and possessing diverse nectaries.Here we performed phylogenetic analysis of 60 species from all 15 genera of the subtribe Swertiinae sensu Ho and liu,representing the range of floral diversity,using data from the nuclear and plastid genomes.Extensive topological conflicts were present between the nuclear and plastome trees.Three of the 15 genera represented by multiple species are polyphyletic in both trees.Key floral traits including corolla type,absence or presence of lobe scales,nectary type,nectary position,and stigma type are randomly distributed in the nuclear and plastome trees without phylogenetic correlation.We also revealed the likely ancient hybrid origin of one large clade comprising 10 genera with diverse floral traits.These results highlight the complex evolutionary history of this subtribe.The phylogenies constructed here provide a basic framework for further exploring the ecological and genetic mechanisms underlying both species diversification and floral diversity.

关键词： ancient hybridization floral diversity Gentianaceae phylogenomics Qinghai-Tibet Plateau subtribe Swertiinae

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Clinical characteristics and prognosis of traumatic basal ganglia hematomas: A retrospective analysis of 40 cases

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Neural Regeneration Research 2006年第3期1卷 286-288页

作者： jialiang li Chunjiang Yu Department of Neurosurgery Shangqiu First People＇s Hospital Shangqiu 476100 Department of Neurosurgery Beijing Sanbo Fuxing Neurosurgery Hospital Beijing 100038 China

AIM： To retrospectively analyze the pathogenesis, clinical characteristics, treatment and prognostic characteristics in patients with traumatic basal ganglia hematomas （TBGH）. METHODS： A retrospective analysis of the clinical data was performed in 40 patients with TBGH who were selected from 1 250 patients with closed brain injury, who admitted to the Department of Neurosurgery of Shangqiu First People＇s Hospital from January 1990 to January 2004. The pathogenesis, clinical characteristics and signs, results of radiological examination, treatment and prognostic characteristics were analyzed. The patients all had definite history of brain injury, manifested by neurological functional disturbance to different extent after brain injury, and basal ganglia hemorrhage was identified by CT after brain injury, and hemorrhagic volume were more than or equal to 2 mL. Totally 34 males and 6 females were enrolled, aged 16-72 years and 28 cases of them were younger than 40 years old. The prognosis of the patients was evaluated with Glasgow outcome scale （GOS） at 6 months after injury, and GOS scoring standard was 1-5 points （1 for dead; 2 for vegetative survival, long-term coma, manifestations of decorticate rigidity or decerebrate rigidity; 3 for severely disabled, should be look after by others; 4 for moderately disabled, be able in self-care; 5 for good recovery, adults can work and study）. RESULTS： The enrolled cases accounted for 3.20% of the 1250 patients with closed brain injury admitted at the same period. ① The causes of injury included traffic accident in 36 cases, fall in 2 cases, and assault in 2 cases. ②At admission, the Glasgow coma scale （GCS） scores were as follow： 13-15 scores （mild） in 10 cases, 9-12 scores （moderate） in 20 cases, and 3-8 scores （severe） in 10 cases. Hemiplegia presented in 37 cases, aphasia in 20 cases, conscious disturbance in 10 cases, unilateral mydriasis in 6 cases, and decerebrate rigidity in 2 cases. ③ TBGH was detected by CT within 30 minutes to 24 hours after injury in 37 cases, and

关键词： A retrospective analysis of 40 cases than

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藏南温泉稀有金属来源及其富集机制:以羊易热泉为例

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岩石学报 2024年第5期40卷 1669-1689页

作者：徐强纪伟强杨一鸣李家亮中国科学院地质与地球物理研究所岩石圈演化国家重点实验室北京100029 中国科学院大学地球与行星科学学院北京100049

在全球科技与工业飞速发展的背景下,对稀有金属的需求日益增长,使得其研究显得尤为重要。青藏高原南部地区地热资源丰富,地热水中稀有金属富集,为研究地热系统中稀有金属的来源和成因提供了独特的研究平台。本研究专注于青藏高原南部地... 详细信息

在全球科技与工业飞速发展的背景下,对稀有金属的需求日益增长,使得其研究显得尤为重要。青藏高原南部地区地热资源丰富,地热水中稀有金属富集,为研究地热系统中稀有金属的来源和成因提供了独特的研究平台。本研究专注于青藏高原南部地热系统中稀有金属元素特征,特别是li、Rb、Cs等元素极度富集的现象。该现象已经引起了地质学界的广泛关注,但目前还缺乏一个全面的成因模型来阐明这些稀有金属的来源及其富集机制。因此,本文选择了位于亚东-谷露裂谷中段的羊易热泉及其周边岩浆岩作为研究对象,探究羊易热泉水化学特征,厘定羊易地区不同时代岩浆岩源区组成和演化特征,并揭示藏南温泉成因模式与稀有金属富集的关系。通过对羊易热泉的水化学及其周围岩浆岩的岩石地球化学分析,本研究得出了以下认识:(1)羊易热泉中稀有金属元素含量极度富集,且Cs含量高于Rb含量;(2)对羊易地区不同时代岩浆岩的Sr-Nd同位素分析显示,随着时间的推移,岩浆源区的同位素组成趋向富集,这暗示了印度古老大陆物质的贡献在逐渐增加;(3)热泉中Sr元素可能主要来自于水岩相互作用,而li、Rb、Cs等元素更多源于高演化岩浆流体的贡献;(4)稀有金属元素最初在印度大陆地壳部分熔融形成的长英质岩浆中富集,随着岩浆演化,其流体进一步富集了这些元素,这是藏南温泉稀有金属富集的关键因素。本研究确定藏南温泉中li、Rb、Cs等稀有金属元素主要来源于岩浆流体的注入,并建立起藏南温泉成因模式与稀有金属富集之间的关系。这不仅提供了对藏南地区温泉稀有金属富集现象的新见解,同时也为理解全球其他地区地热系统中稀有金属的富集机制提供了重要参考。

关键词：稀有金属藏南热泉水岩相互作用岩浆演化地热资源

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柏木属的分类地位和物种多样性研究现状与建议

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南京林业大学学报（自然科学版） 2024年第3期48卷 36-45页

作者：李家亮巫大宇毛康珊四川大学生命科学学院生物资源与生态环境教育部重点实验室四川成都610065

柏木属(Cupressus L.)是柏科的模式属,1753年由卡尔·林奈在其著作《植物种志》中命名,其模式种为地中海柏木(Cupressus sempervirens L.)。但是,随着越来越多的物种得以发现和描述,以及近几十年来系统发育学和群体遗传学研究的开展,柏... 详细信息

柏木属(Cupressus L.)是柏科的模式属,1753年由卡尔·林奈在其著作《植物种志》中命名,其模式种为地中海柏木(Cupressus sempervirens L.)。但是,随着越来越多的物种得以发现和描述,以及近几十年来系统发育学和群体遗传学研究的开展,柏木属的分类地位和物种数量争议不断。2011年,Christenhusz等提出现存裸子植物新的分类系统时(即克氏裸子植物系统),柏木属(Cupressus sensu Christenhusz)的概念可涵盖4个属级类群:狭义柏木属、金柏属、北美金柏属、美洲柏木属;通常广义柏木属(Cupressus sensu lato)涵盖狭义柏木属和美洲柏木属物种;而狭义柏木属(Cupressus sensu stricto)仅包含广义柏木属中分布在旧世界的物种。基于21世纪以来国内外学者对柏木属及其近缘属的研究进展,以及笔者自身的研究和野外考察经验,笔者简要综述了该属的分类地位和物种多样性。最新的系统发育基因组学证据表明,狭义柏木属为单系群且与刺柏属互为姊妹关系,二者的共同祖先与金柏属、北美金柏属、美洲柏木属的共同祖先互为姊妹关系。对一些具争议的分类处理提出了新的见解,将Cupressus rushforthii Maerki&J.Hoch降级为Cupressus austrotibetica Silba的异名,并确认剑阁柏木为大渡河柏木(Cupressus fallax Franco)和柏木(Cupressus funebris Endlicher)的杂交后代,将其拉丁名修订为Cupressus×jiangeensis N.Zhao;同时,将王氏柏木(Cupressus×wangii J.Hoch,Maerki&Rushforth)处理为剑阁柏木的异名;另外,为避免混淆,建议将西藏波密县新近发现的亚洲最高树种Cupressus austrotibetica Silba中文名修改为“西藏高柏”,将主要分布在尼泊尔的“西藏柏木”(Cupressus torulosa D.Don ex Lamb.)中文名恢复为“喜马拉雅柏”。根据目前的研究现状,狭义柏木属应包含14种,其中包括1个杂种。为确保未来柏木属物种划分的准确性和科学性,建议采用整合物种概念,在分类工作中综合考虑形态学、遗传学、生态学和生物地理学等多维度数据。新一代测序技术等前沿技术方法为柏木属系统分类与进化研究提供了强大工具,未来对狭义柏木属物种多样性及其演化历史的探索和理解还将进一步深入。

关键词：柏木属分类修订物种概念生物多样性

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Valence Bands Convergence in p-Type CoSb_(3) through Electronegative Fluorine Filling

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Chinese Physics Letters 2024年第7期41卷 87-94页

作者：黄写格李家良马浩钦李昌隆刘天乐段波翟鹏程李国栋 Hubei Key Laboratory of Theory and Application of Advanced Materials Mechanics Wuhan University of TechnologyWuhan 430070China School of Civil Engineering&Architecture Wuhan Polytechnic UniversityWuhan 430023China State Key Laboratory of Advanced Technology for Materials Synthesis and Processing Wuhan University of TechnologyWuhan 430070China

Band convergence is considered to be a strategy with clear benefits for thermoelectric performance,generally favoring the co-optimization of conductivity and Seebeck cofficients,and the conventional means include elemen-tal illing to regulate the band.However,the influence of the most electronegative fuorine on the CoSbg band remains unclear.We carry out density-functional-theory calculations and show that the valence band maximum gradually shifts downward with the increase of fuorine illing,lastly the valence band maximum converges to the highly degenerated secondary valence bands in fuorine-flled skutterudites.The effective degeneracy near the secondary valence band promotes more valleys to participate in electric transport,leading to a carrier mobility of more than the threefold and nearly twofold effective mass for F_(0.1)Co_(4)Sb_(12) compared to Co_(4)Sb_(12).This work provides a new and promising route to boost the thermoelectric properties of p-type skutterudites.

关键词： valence Convergence bands

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