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Formal verification of synchronous data-flow program transformations toward certified compilers

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Frontiers of Computer Science 2013年第5期7卷 598-616页

作者： Van Chan NGO jean-Pierre TALPIN Thierry gautier Paul Le GUERNIC Loic BESNARD INRIA Rennes-Bretagne Atlantique Rennes 35042 France IRISA/CNRS Rennes 35042 France

Translation validation was invented in the 90＇s by Pnueli et al. as a technique to formally verify the correctness of code generators. Rather than certifying the code generator or exhaustively qualifying it, translation validators attempt to verify that program transformations preserve semantics. In this work, we adopt this approach to formally verify that the clock semantics and data dependence are preserved during the compilation of the Signal compiler. Translation valida- tion is implemented for every compilation phase from the initial phase until the latest phase where the executable code is generated, by proving the transformation in each phase of the compiler preserves the semantics. We represent the clock semantics, the data dependence of a program and its trans- formed counterpart as first-order formulas which are called clock models and synchronous dependence graphs （SDGs）, respectively. We then introduce clock refinement and depen- dence refinement relations which express the preservations of clock semantics and dependence, as a relation on clock mod- els and SDGs, respectively. Our validator does not require any instrumentation or modification of the compiler, nor any rewriting of the source program.

关键词： formal verification translation validation certi-fied compiler multi-clocked synchronous programs embed-ded systems.

Polychronous automata and their use for formal validation of AADL models

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Frontiers of Computer Science 2019年第4期13卷 677-697页

作者： Thierry gautier Clement GUY Alexandre HONORAT Paul LE GUERNIC jean-Pierre TALPIN Loic BESNARD Univ. Rennes Inria Rennes-Bretagne-Atlantique Research Centre F-35000 Rennes France Univ. Rennes CNRS IRISA F-35000 Rennes France

This paper investigates how state diagrams can be best represented in the polychronous model of computation (MoC) and proposes to use this model for code validation of behavior specifications in architecture analysis & design language (AADL). In this relational MoC, the basic objects are signals, which are related through dataflow equations. Signals are associated with logical clocks, which provide the capability to describe systems in which components obey multiple clock rates. We propose a model of finite-state automata, called polychronous automata, which is based on clock relationships. A specificity of this model is that an automaton is submitted to clock constraints, which allows one to specify a wide range of control-related configurations, being either reactive or restrictive with respect to their control environment. A semantic model is defined for these polychronous automata, which relies on boolean algebra of clocks. Based on a previously defined modeling method for AADL software architectures using the polychronous MoC, the proposed model is used as a formal model for the AADL behavior annex. This is illustrated with a case study involving an adaptive cruise control system.

关键词： architecture modeling formal semantics finitestate automaton polychronous model synchronous concurrency code generation AADL

Exploring system architectures in AADL via Polychrony and SynDEx

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Frontiers of Computer Science 2013年第5期7卷 627-649页

作者： Huafeng YU Yue MA Thierry gautier Loc BESNARD jean-Pierre TALPIN Paul Le GUERNIC Yves SOREL INRIA Rennes-Bretagne Atlantique 263 av. du Général LeclercRennes 35042 France IRISA/CNRS 263 av. du Général LeclercRennes 35042 France INRIA Paris-Rocquencourt Domaine de VoluceauBP 105Le Chesnay Cedex 78153 France

Architecture analysis&design language(AADL)has been increasingly adopted in the design of embedded systems,and corresponding scheduling and formal verification have been well ***,little work takes code distribution and architecture exploration into account,particularly considering clock constraints,for distributed multi-processor *** this paper,we present an overview of our approach to handle these concerns,together with the associated toolchain,***,in order to avoid semantic ambiguities of AADL,the polychronous/multiclock semantics of AADL,based on a polychronous model of computation,is *** synthesis is then carried out in Polychrony,which bridges the gap between the polychronous semantics and the synchronous semantics of *** same timing semantics is always preserved in order to ensure the correctness of the transformations between diferent *** distribution and corresponding scheduling is carried out on the obtained SynDEx model in the last step,which enables the exploration of architectures originally specified in *** contribution provides a fast yet efcient architecture exploration approach for the design of distributed real-time and embedded *** avionic case study is used here to illustrate our approach.

关键词： Polychrony Signal AADL SynDEx architecture exploration modeling timing analysis scheduling distribution

TRPV1 and TRPA1 in cutaneous neurogenic and chronic inflammation： pro-inflammatory response induced by their activation and their sensitization

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Protein & Cell 2017年第9期8卷 644-661页

作者： Olivier Gouin Killian L'Herondelle Nicolas Lebonvallet Christelle Le Gall-lanotto Mehdi Sakka Virginie Buhe Emmanuelle PIee-gautier jean-Luc Carre Luc Lefeuvre Laurent Misery~,Raphaele Le Garrec Laboratory on Interaction Neurons-Keratinocytes (LINK) University of Western Brittany 29200 Brest France Uriage Dermatological Laboratories 92400 Courbevoie France

Cutaneous neurogenic inflammation （CNI） is inflammation that is induced （or enhanced） in the skin by the release of neuropeptides from sensory nerve endings. Clinical manifestations are mainly sensory and vascular disorders such as pruritus and erythema. Transient receptor potential vanilloid 1 and ankyrin 1 （TRPV1 and TRPA1, respectively） are non-selective cation channels known to specifically participate in pain and CNI. Both TRPV1 and TRPA1 are co-expressed in a large subset of sensory nerves, where they integrate numerous noxious stimuli. It is now clear that the expression of both channels also extends far beyond the sensory nerves in the skin, occuring also in keratinocytes, mast cells, dendritic cells, and endothelial cells. In these non-neu- ronal cells, TRPV1 and TRPA1 also act as nociceptive sensors and potentiate the inflammatory process. This review discusses the role of TRPV1 and TRPA1 in the modulation of inflammatory genes that leads to or maintains CNI in sensory neurons and non-neuronal skin cells. In addition, this review provides a summary of current research on the intracellular sensitization pathways of both TRP channels by other endogenous inflammatory mediators that promote the self-maintenance of CNI.

关键词： sensory nervenflammation inflammatory geneneurogenic skinregulation pruritus

Controlled acceleration of GeV electron beams in an all-optical plasma waveguide

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Light(Science & Applications) 2022年第7期11卷 1535-1541页

作者： Kosta Oubrerie Adrien Leblanc Olena Kononenko Ronan Lahaye Igor A.Andriyash Julien gautier jean-Philippe Goddet Lorenzo Martelli Amar TafziKim Ta Phuoc Slava Smartsev Cédric Thaury LOA CNRSEcole PolytechniqueENSTA ParisInstitut Polytechnique de Paris181 Chemin de la Hunière et des Joncherettes91120 PalaiseauFrance

Laser-plasma accelerators(LPAs)produce electric fields of the order of 100 GV m-1,more than 1000 times larger than those produced by radio-frequency *** uniquely strong fields make LPAs a promising path to generate electron beams beyond the TeV,an important goal in high-energy ***,large electric fields are of little benefit if they are not maintained over a long *** is therefore of the utmost importance to guide the ultra-intense laser pulse that drives the *** very high energies is equally useless if the properties of the electron beam change completely from shot to shot,due to the intrinsic lack of stability of the injection ***-of-the-art laser-plasma accelerators can already address guiding and control challenges separately by tweaking the plasma ***,the production of beams that are simultaneously high quality and high energy has yet to be *** paper presents a novel experiment,coupling laser-plasma waveguides and controlled injection techniques,facilitating the reliable and efficient acceleration of high-quality electron beams up to 1.1 GeV,from a 50 TW-class laser.

关键词： process. acceleration uniquely

Macroscale fluorescence imaging against autofluorescence under ambient light

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Light(Science & Applications) 2018年第1期7卷 151-162页

作者： Ruikang Zhang Raja Chouket Marie-Aude Plamont Zsolt Kelemen Agathe Espagne Alison G.Tebo Arnaud gautier Lionel Gissot jean-Denis Faure Ludovic Jullien Vincent Croquette Thomas Le Saux PASTEUR Département de ChimieÉcole Normale SupérieurePSL UniversitySorbonne UniversitéCNRS75005 ParisFrance Institut jean-Pierre Bourgin INRAAgroParisTechCNRSSaclay Plant Science(SPS)UniversitéParis-SaclayVersaillesFrance Laboratoire de Physique Statistique École Normale SupérieurePSL Research UniversityUniversitéParis Diderot Sorbonne Paris-CitéSorbonne UniversitéCNRS75005 ParisFrance Institut de biologie de l’École normale supérieure(IBENS) École Normale SupérieureCNRSINSERMPSL Research University75005 ParisFrance

Macroscale fluorescence imaging is increasingly used to observe biological ***,it may suffer from spectral interferences that originate from ambient light or autofluorescence of the sample or its *** this manuscript,we built a simple and inexpensive fluorescence macroscope,which has been used to evaluate the performance of Speed OPIOM(Out of Phase Imaging after Optical Modulation),which is a reference-free dynamic contrast protocol,to selectively image reversibly photoswitchable fluorophores as labels against detrimental autofluorescence and ambient *** tuning the intensity and radial frequency of the modulated illumination to the Speed OPIOM resonance and adopting a phase-sensitive detection scheme that ensures noise rejection,we enhanced the sensitivity and the signal-to-noise ratio for fluorescence detection in blot assays by factors of 50 and 10,respectively,over direct fluorescence observation under constant ***,we overcame the strong autofluorescence of growth media that are currently used in microbiology and realized multiplexed fluorescence observation of colonies of spectrally similar fluorescent bacteria with a unique configuration of excitation and emission ***,we easily discriminated fluorescent labels from the autofluorescent and reflective background in labeled leaves,even under the interference of incident light at intensities that are comparable to *** proposed approach is expected to find multiple applications,from biological assays to outdoor observations,in fluorescence macroimaging.

关键词： ambient illumination light

Stable femtosecond X-rays with tunable polarization from a laser-driven accelerator

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Light(Science & Applications) 2017年第1期6卷 410-416页

作者： Andreas Döpp Benoit Mahieu Agustin Lifschitz Cedric Thaury Antoine Doche Emilien Guillaume Gabriele Grittani Olle Lundh Martin Hansson Julien gautier Michaela Kozlova jean Philippe Goddet Pascal Rousseau Amar Tafzi Victor Malka Antoine Rousse Sebastien Corde Kim Ta Phuoc Laboratoire d’Optique Appliquée ENSTACNRS UMR7639Ecole PolytechniqueChemin de la Hunière91761 PalaiseauFrance Present address:Ludwig-Maximilians-Universität München Fakultät für PhysikAm Coulombwall 1Garching 85748Germany ELI Beamlines Project Institute of Physics of the ASCRNa Slovance 218221 Prague 8Czech Republic Department of Physics Lund UniversityPO Box 11822100 LundSweden Department of Physics and Complex Systems Weizmann Institute of Science76100 RehovotIsrael

Technology based on high-peak-power lasers has the potential to provide compact and intense radiation sources for a wide range of innovative *** particular,electrons that are accelerated in the wakefield of an intense laser pulse oscillate around the propagation axis and emit *** betatron source,which essentially reproduces the principle of a synchrotron at the millimeter scale,provides bright radiation with femtosecond duration and high spatial ***,despite its unique features,the usability of the betatron source has been constrained by its poor control and *** this article,we demonstrate the reliable production of X-ray beams with tunable *** ionization-induced injection in a gas mixture,the orbits of the relativistic electrons emitting the radiation are reproducible and *** observe that both the signal and beam profile fluctuations are significantly reduced and that the beam pointing varies by less than a tenth of the beam *** polarization ratio reaches 80%,and the polarization axis can easily be *** anticipate a broad impact of the source,as its unprecedented performance opens the way for new applications.

关键词： laser-plasma interaction laser-wakefield acceleration synchrotron light sources

Helicobacter pylori Virulence Genes cagA, babA2, and vacA Detection in Dyspeptic Patients from Burkina Faso

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American Journal of Molecular Biology 2023年第3期13卷 141-155页

作者： Tegwinde Rebeca Compaore Kalifou Traore Nômawendé Ines Compaore Lassina Traore Sylvie Zida Serge Theophile Soubeiga Dinanibe Kambire jean Claude R. P. Ouedraogo Aminata Dickel Sidibe Yasmine Astrid Sana Tani Sagna Wendkuuni Florencia Djigma Henri gautier Ouedraogo Jacques Simpore Département Biomédical et Santee Publique Institut de Recherche en Sciences de la Santé (IRSS) Ouagadougou Burkina Faso Centre de Recherche Biomoléculaire Pietro Annigoni (CERBA) Ouagadougou Burkina Faso Laboratoire de Biologie et de Génétique Moléculaire (LABIOGENE) Université Joseph KI-ZERBO Ouagadougou Burkina Faso Clinique El Fateh-Suka Service de médecine et de spécialités médicales Ouagadougou Burkina Faso Département de Médecine et de Pharmacopée Traditionnelle Institut de Recherche en Sciences de la Santé (IRSS) Ouagadougou Burkina Faso

The diverse clinical presentation of Helicobacter pylori (H. pylori) infection results from the interaction between bacterial virulence, host genetics, socio-demographic and environmental factors. This study aimed to characterize Helicobacter pylori virulence genes and the associated behavioral factors among dyspeptic patients in Burkina Faso. Two hundred and fifty (250) stool samples were collected from patients with dyspepsia seen at health centers in Ouagadougou, Burkina Faso. Bacterial deoxyribonucleic acid (DNA) was extracted using a commercial kit. Virulence genes were detected using conventional multiplex Polymerase Chain Reaction with specific primers. The overall prevalence of Helicobacter pylori of the 250 participants was 91.20%. CagA virulence gene was present among 20.19% of individuals, while babA2 and vacA were detected respectively among 9.65% and 67.54% of the population positive for Helicobacter pylori. Among vacA subtypes, vacAs1 was the most frequent, with 39.04%, followed by vacAi1 (19.74%), vacAi2 (17.54%), and vacAs2 with 10.96%. Regarding vacAm1 and vacAm2, they were less frequent at 6.14% each. “Handwashing three times or less per day” significantly increased the risk of having vacAi2 allele and H. pylori rRNA16s, with p-values of 0.013 and 0.020, respectively. The consumption of non-tap water increases the risk of carrying the cagA virulence gene. Additionally, H. pylori-positive patients living with more than four (4) people in their household had about two times the risk of having the vacAs1 allele. The present study shows the detection of Helicobacter pylori cagA, vacA subtypes, and babA2 by stool a PCR method in Burkina Faso. The strong association between sanitary habits and virulence factors depicts the composite interaction between ecological factors, gastric mucosa, and bacteria. Therefore, the synergic action of these factors should be considered when aiming for bacterial eradication and gastric pathology cure.

关键词： Helicobacter pylori Stool cagA babA2 vacA