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Genome-wide association studies reveal the genetic basis of amino acid content variation in tea plants

Journal of Integrative Agriculture 2023年第11期22卷 3364-3379页

作者： GUO Ya-fei LI Dai-li QIU Hai-ji ZHANG Xiao-liang LIU Lin ZHAO Jing-jing jiang de-yuan National Key Laboratory for Germplasm Innovation&Utilization of Horticultural Crops College of Horticulture and Forestry SciencesHuazhong Agricultural UniversityWuhan 430070P.R.China

Tea is one of the most popular non-alcoholic beverages in the world,and free amino acids,especially theanine,make a major contribution to the umami taste of ***,the genetic basis of the variation in amino acid content in tea plants remains largely ***,we measured the free amino acid content in fresh leaves of 174 tea accessions over two years using a targeted metabolomics approach and obtained genotype data via RNA ***-wide association studies were conducted to investigate loci affecting the content of free amino acids.A total of 69 quantitative trait loci(–log10(P-value)>5)were *** annotation revealed that branched-chain amino acid aminotransferase,glutamine synthetase,nitrate transporter,and glutamate decarboxylase might be important for amino acid *** significant loci,glutamine synthetase(Glu1,P=3.71×10^(−4);Arg1,P=4.61×10^(−5))and branched-chain amino acid aminotransferase(Val1,P=4.67×10^(−5);I_Leu1,P=3.56×10^(−6)),were identified,*** on the genotyping result,two alleles of CsGS(CsGS-L and CsGS-H)and CsBCAT(CsBCAT-L and CsBCAT-H)were selected to perform function *** of CsGS-L and CsGS-H enhanced the contents of glutamate and arginine in transgenic plants,and overexpression of CsBCAT-L and CsBCAT-H promoted the accumulation of valine,isoleucine and *** activity assay uncovered that SNP1054 is important for CsGS catalyzing glutamate into ***,CsGS-L and CsGS-H differentially regulated the accumulation of glutamine,and CsBCAT-L and CsBCAT-H differentially regulated the accumulation of branched-chain amino *** summary,the findings in our study would provide new insights into the genetic basis of amino acids contents variation in tea plants and facilitate the identification of elite genes to enhance amino acids content.

关键词： Camellia sinensis amino acids genetic variation association studies genotype analysis functional verification

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MAUN:Memory-Augmented deep Unfolding Network for Hyperspectral Image Reconstruction

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IEEE/CAA Journal of Automatica Sinica 2024年第5期11卷 1139-1150页

作者： Qian Hu Jiayi Ma yuan Gao Junjun jiang Yixuan yuan Electronic Information School Wuhan UniversityWuhan 430072China School of Computer Science and Technology Harbin Institute of TechnologyHarbin 150001China department of Electronic Engineering Chinese University of Hong KongHong Kong 999077China

Spectral compressive imaging has emerged as a powerful technique to collect the 3D spectral information as 2D *** algorithm for restoring the original 3D hyperspectral images(HSIs)from compressive measurements is pivotal in the imaging *** approaches painstakingly designed networks to directly map compressive measurements to HSIs,resulting in the lack of interpretability without exploiting the imaging *** some recent works have introduced the deep unfolding framework for explainable reconstruction,the performance of these methods is still limited by the weak information transmission between iterative *** this paper,we propose a Memory-Augmented deep Unfolding Network,termed MAUN,for explainable and accurate HSI ***,MAUN implements a novel CNN scheme to facilitate a better extrapolation step of the fast iterative shrinkage-thresholding algorithm,introducing an extra momentum incorporation step for each iteration to alleviate the information ***,to exploit the high correlation of intermediate images from neighboring iterations,we customize a cross-stage transformer(CSFormer)as the deep denoiser to simultaneously capture self-similarity from both in-stage and cross-stage features,which is the first attempt to model the long-distance dependencies between iteration *** experiments demonstrate that the proposed MAUN is superior to other state-of-the-art methods both visually and *** code is publicly available at https://***/HuQ1an/MAUN.

关键词： deep folding iteration

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An Accelerated Stochastic Mirror descent Method

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Journal of the Operations Research Society of China 2024年第3期12卷 549-571页

作者： Bo-Ou jiang Ya-Xiang yuan LSEC ICMSECAMSSChinese Academy of SciencesBeijing100190China department of Mathematics University of Chinese Academy of SciencesBeijing100049China

Driven by large-scale optimization problems arising from machine learning,the development of stochastic optimization methods has witnessed a huge *** types of methods have been developed based on vanilla stochastic gradient descent ***,for most algorithms,convergence rate in stochastic setting cannot simply match that in deterministic *** understanding the gap between deterministic and stochastic optimization is the main goal of this ***,we are interested in Nesterov acceleration of gradient-based *** our study,we focus on acceleration of stochastic mirror descent method with implicit regularization *** that the problem objective is smooth and convex or strongly convex,our analysis prescribes the method parameters which ensure fast convergence of the estimation error and satisfied numerical performance.

关键词： Large-scale optimization Variance reduction Mirror descent Acceleration Independent sampling Importance sampling

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Tribological evaluation of thermoplastic polyurethane-based bearing materials under water lubrication:Effect of load,sliding speed,and temperature

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Friction 2024年第8期12卷 1801-1815页

作者： Shaoli jiang Janet SSWONG debashis PUHAN Tian yuan Xiuqin BAI Chengqing yuan State Key Laboratory of Maritime Technology and Safety Wuhan University of TechnologyWuhan 430063China department of Mechanical Engineering Imperial College LondonLondon SW72AZUK Yusuf Hamied department of Chemistry University of CambridgeLensfield RoadCambridge CB21EWUK

Polymers are widely used in bearing *** the case of water-lubricated stern tube bearings,thermoplastic polyurethane(TPU)-based composites are used due to their excellent wear resistance,corrosion resistance,and tunable mechanical *** tribological performance,however,depends on operating *** this work,TPU was blended with carbon fiber,graphene platelet,and ultra-high molecular weight polyethylene(UHMWPE).Friction tests of TPU based-composites against copper countersurface were carried out in water to mimic the actual operating conditions of the *** of the resulting contacts were in the boundary lubrication regime,in which friction was attributed to both contact mechanics of asperities as well as water *** results show that the viscoelasticity of TPU has a considerable impact on its tribological *** lubrication at 50°C promotes the softening of polymer surface material during sliding,resulting in higher fluctuation in the coefficient of friction and wear *** is attributed to the reduced thermomechanical *** addition,Schallamach waviness is observed on worn *** tribological properties of TPU are significantly improved by the inclusion of carbon fiber,graphene platelet,and *** formation of graphene transfer-layers and UHMWPE transfer film reduces friction and wear loss,while the inclusion of carbon fiber enhances wear resistance due to improved mechanical properties and load bearing capacity.

关键词： friction thermoplastic polyurethane(TPU) water-lubricated bearings graphene platelet carbon fibers ultra-high molecular weight polyethylene(UHMWPE)

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Turbo Message Passing Based Burst Interference Cancellation for Data detection in Massive MIMO-OFDM Systems

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China Communications 2024年第2期21卷 143-154页

作者： Wenjun jiang Zhihao Ou Xiaojun yuan Li Wang National Key Laboratory of Wireless Communications University of Electronic Science and Technology of ChinaChengdu 611731China

This paper investigates the fundamental data detection problem with burst interference in massive multiple-input multiple-output orthogonal frequency division multiplexing(MIMO-OFDM) systems. In particular, burst interference may occur only on data symbols but not on pilot symbols, which means that interference information cannot be premeasured. To cancel the burst interference, we first revisit the uplink multi-user system and develop a matrixform system model, where the covariance pattern and the low-rank property of the interference matrix is discussed. Then, we propose a turbo message passing based burst interference cancellation(TMP-BIC) algorithm to solve the data detection problem, where the constellation information of target data is fully exploited to refine its estimate. Furthermore, in the TMP-BIC algorithm, we design one module to cope with the interference matrix by exploiting its lowrank property. Numerical results demonstrate that the proposed algorithm can effectively mitigate the adverse effects of burst interference and approach the interference-free bound.

关键词： burst interference cancellation data detection massive multiple-input multiple-output(MIMO) message passing orthogonal frequency division multiplexing(OFDM)

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Solvothermal synthesis and adsorption performance of layered boehmite using aluminum chloride and high-alumina fly ash

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Chinese Journal of Chemical Engineering 2024年第6期70卷 280-290页

作者： Jing Wen Ruirui yuan Tao jiang Tangxia Yu Yufan Zhang School of Metallurgy Northeastern UniversityShenyang 110819China Key Laboratory for Ecological Metallurgy of Multimetallic Mineral(Ministry of Education) Northeastern UniversityShenyang 110819China Liaoning Key Laboratory for Metallurgical Sensor and Technology Shenyang 110819China

High alumina fly ash(FAHAl)is a kind of bulk solid waste unique to China,whose availability of high-value aluminum and the threat to the environment makes its high-value utilization *** this work,the alumina containing leaching solution obtained from Na_(2)CO_(3) roasting and HCl leaching of FAHAl was used as the mother liquor to prepare layered boehmite in *** preparation process with AlCl_(3) as the raw material was also *** formation process and mechanism of boehmite,the choice of solvent,along with the adsorption capability of Congo red were analyzed by X-ray diffraction,scanning electron microscopy,Fourier transform infrared spectroscopy,Brunauer-Emmett-Teller method and adsorption *** showed that during the preparation of layered boehmite,the precursor Al(OH)_(3) from the reaction of Al^(3+) and OH-is transformed into boehmiteγ-*** existence of ethanol is beneficial to regulate and promote the growth of boehmite crystal *** water and ethanol are mixed with a volume ratio of 2:1 and used as the solvent,the maximum specific surface area of the boehmite is obtained at 135.7 m^(2)·g^(-1),and 99.16%of Congo red can be absorbed after 10 min when AlCl3 is used as a raw *** purified leaching solution is used as the mother liquid,the crystallinity of boehmite decreases slightly when the pH value decreases from 12.5 to *** pH is 11,the removal efficiency of Congo red reaches a maximum of 72.25%.This process not only achieves the extraction of aluminum and high-value utilization of FAHAl but also provides a thought to prepare layered boehmite with adsorption properties.

关键词： High-alumina fly ash Layered boehmite In-situ preparation Solvothermal synthesis Adsorption High-value utilization

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Impact of Carbon Chain Structures in the Backbone on the Flexibility of Modified Polyarylene Sulfide Resins: Molecular Dynamics Simulations and Mesoscopic Analysis

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Chinese Journal of Polymer Science 2024年第4期42卷 544-557页

作者： Chi Zhang Rong Liu Jing-yuan Liu Wen-Wei jiang Key Laboratory of Fine Chemical Engineering and Functional Materials School of Chemical EngineeringSichuan UniversityChengdu610065China

In the domain of high-performance engineering polymers, the enhancement of mechanical flexibility in poly(phenylene sulfide) (PPS) resins has long posed a significant challenge. A novel molecular structure, designated as PP-He-IS, wherein imide rings and an aliphatic hexylene chain are covalently incorporated into the PPS backbone to enhance its flexibility, is introduced in this study. Molecular dynamics (MD) simulations are employed to systematically explore the effects of diversifying the backbone chain structures by substituting phenyl units with alkyl chains of varying lengths, referred to as PP-A-IS where “A” signifies the distinct intermediary alkyl chain configurations. Computational analyses reveal a discernable decrement in the glass transition temperature (Tg) and elastic modulus, counterbalanced by an increment in yield strength as the alkyl chain length is extended. Notably, the PP-He-IS variant is shown to exhibit superior yield strength while simultaneously maintaining reduced elastic modulus and Tg values, positioning it as an advantageous candidate for flexible PPS applications. Mesoscopic analyses further indicate that structures such as PP-He-IS, PP-Pe-IS, and PP-Bu-IS manifest remarkable flexibility, attributable to the presence of freely rotatable carbon-carbon single bonds. Experimental validation confirms that a melting temperature of 504 K which is lower than that of conventional PPS, and lower crystallinity are exhibited by PP-He-IS, thereby affording enhanced processability without compromising inherent thermal stability. Novel insights into the strategic modification of PPS for mechanical flexibility are thus furnished by this study, which also accentuates the pivotal role played by molecular dynamics simulations in spearheading high-throughput investigations in polymer material modifications.

关键词： Molecular dynamics simulations Polyarylene Sulfide Main-chain modifications Flexibility Aliphatic hexylene chain

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Visceral adipose tissue predicts severity and prognosis of acute pancreatitis in obese patients

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Hepatobiliary & Pancreatic Diseases International 2024年第5期23卷 458-462页

作者： yuan Tian Qing Huang Yu-Tang Ren Xuan jiang Bo jiang department of Gastroenterology Beijing Tsinghua Changgung HospitalSchool of Clinical MedicineTsinghua UniversityBeijing 102218China

Acute pancreatitis is a common systemic inflammatory disease, manifested by a spectrum of severity, ranging from mild in the majority of patients to severe acute pancreatitis. Patients with severe acute pancreatitis suffer from severe local and systemic complications and organ failure, leading to a poor prognosis. The early recognition of the severe condition is important to improve prognosis. Obesity has risen in tandem with an increase in the severity of acute pancreatitis in recent years. Studies have revealed that adipose tissue, particularly visceral adipose tissue is associated with the prognosis of acute pancreatitis. This review discussed the role of visceral adipose tissue in obese patients with acute pancreatitis and explored the possible mechanism involved.

关键词： Visceral adipose tissue Obesity Acute pancreatitis

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Time-dependent longitudinal responses of a shield tunnel induced by surcharge load:Theoretical prediction and analysis

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Underground Space 2024年第1期14卷 219-238页

作者： Fayun Liang Zhuwei jiang Qiang yuan Lin Li Rulu Wang department of Geotechnical Engineering Tongji UniversityShanghai 200092China School of Highway Chang’an UniversityXi’an 710064China Shanghai Shentong Metro Group Limited Maintenance Center Shanghai 20070China

The surcharge load at the ground surface inevitably breaks the original equilibrium state between the underneath tunnel and the surrounding soil,which will impact the service performance of a subway *** paper presents a novel semi-analytical approach for assessing the time-dependent,longitudinal responses of a subway tunnel in soft soil strata induced by the surcharge *** solution is developed based on the framework of the classical"two-stage method"but innovatively incorporates the effects of ground stratification,the consolidation process,and the longitudinal stiffness reduction of the ***’s poroelastic theory in conjunction with the Laplace-Fourier transform technique is selected to model the deformation of the stratified ground,while the Timoshenko beam on a Pasternak foundation is employed to model the mechanical responses of the *** proposed semi-analytical solution is validated not only by comparison with benchmark solutions and a finite element model,but also by predicting a well-documented field *** analyses are conducted to investigate the effects of the elastic modulus and the permeability coefficient of the stratified ground on the longitudinal responses of the *** is expected that the proposed solution can serve as a useful tool for evaluating the effects of the surcharge load on the longitudinal responses of a subway tunnel.

关键词： Time-dependent Longitudinal responses Stratified ground Subway tunnels Ground surface surcharge Consolidation

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Traditional Chinese medicine for the treatment of immune-related nephropathy:A review

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Acta Pharmaceutica Sinica B 2024年第1期14卷 38-66页

作者： Pu jiang Changliang Yao de-an Guo School of Pharmacy Nanjing University of Chinese MedicineNanjing 210023China Shanghai Research Center for Modernization of Traditional Chinese Medicine National Engineering Research Center of TCM Standardization TechnologyShanghai Institute of Materia MedicaChinese Academy of SciencesShanghai 201203China

Immune-related nephropathy(IRN)refers to immune-response-mediated glomerulonephritis and is the main cause of end-stage renal *** pathogenesis of IRN is not fully understood;therefore,treatment is *** Chinese medicines(TCMs)have potent clinical effects in the treatment of the IRN conditions immunoglobulin A nephropathy,lupus nephropathy,and diabetic *** underlying mechanisms mainly include its inhibition of inflammation;improvements to renal interstitial fibrosis,oxidative stress,autophagy,apoptosis;and regulation of *** this review,we summarize the clinical symptoms of the three IRN subtypes and the use of TCM prescriptions,herbs,and bioactive compounds in treating IRN,as well as the potential mechanisms,intending to provide a reference for the future study of TCM as IRN treatments.

关键词： IgA nephropathy Diabetic nephropathy Lupus nephritis Traditional Chinese medicine Immunity Pathogenesis Mechanism Pathophysiology

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