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Phylogenetic and ecological reevaluation of the order Onygenales

Fungal Diversity 2022年第4期115卷 1-72页

作者： Hazal Kandemir Karolina Dukik Marcus de Melo Teixeira j.benjamin stielow Fatima Zohra Delma Abdullah M.S.Al‑Hatmi Sarah A.Ahmed Macit Ilkit G.Sybren de Hoog Center of Expertise in Mycology Radboud University Medical Center/Canisius Wilhelmina HospitalNijmegenThe Netherlands Division of Medical Mycology Faculty of MedicineUniversity ofÇukurovaAdanaTurkey Westerdijk Fungal Biodiversity Institute UtrechtThe Netherlands Faculdade de Medicina Universidade de BrasíliaBrasíliaBrazil Pathogen and Microbiome Institute Northern Arizona UniversityFlagstaffUSA Thermo Fisher Scientific LandsmeerThe Netherlands Natural&Medical Sciences Research Center University of NizwaNizwaOman Key Laboratory of Environmental Pollution Monitoring and Disease Control Ministry of Education of Guizhou&Key Laboratory of Medical Microbiology and ParasitologySchool of Basic Medical SciencesGuizhou Medical UniversityGuiyangChina

The order Onygenales is classified in the class Eurotiomycetes of the subphylum *** in this order have classically been isolated from soil and dung,and two lineages contain causative agents of superficial,cutaneous and systemic infections in *** ecology and habitat choices of the species are driven mainly by the keratin and cellulose degradation *** present study aimed to investigate whether the ecological trends of the members of Onygenales can be interpreted in an evolutionary sense,linking phylogenetic parameters with habitat preferences,to achieve polyphasic definitions of the main taxonomic *** processes were estimated by multiple gene genealogies and divergence time *** described families,namely,Arthrodermataceae,Ajellomycetaceae,Ascosphaeraceae,Eremascaceae,Gymnoascaceae,Onygenaceae and Spiromastigoidaceae,were accepted in Onygenales,and two new families,Malbrancheaceae and Neogymnomycetaceae,were introduced.A number of species could not be assigned to any of the defined *** study provides a revised overview of the main lines of taxonomy of Onygenales,supported by multilocus analyses of ITS,LSU,TUB,TEF1,TEF3,RPB1,RPB2,and ribosomal protein 60S L10(L1)(RP60S)sequences,combined with available data on ecology,physiology,morphology,and genomics.

关键词： Ancestral reconstruction Evolution Onygenales Taxonomy

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Phylogeny,ecology and taxonomy of systemic pathogens and their relatives in Ajellomycetaceae(Onygenales):Blastomyces,Emergomyces,Emmonsia,Emmonsiellopsis

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Fungal Diversity 2018年第3期90卷 245-291页

作者： Yanping jiang Karolina Dukik jose F.Munoz Lynne Sigler Ilan S.Schwartz Nelesh P.Govender Chris Kenyon Peiying Feng Bert Gerrits van den Ende j.benjamin stielow Alberto M.Stchigel Hongguang Lu Sybren de Hoog Department of Dermatology The Affiliated HospitalGuizhou Medical UniversityGuiyangChina Westerdijk Fungal Biodiversity Institute UtrechtThe Netherlands Center of Expertise in Mycology of RadboudUMC/Canisius Wilhelmina Hospital NijmegenThe Netherlands Institute of Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands Broad Institute of MIT and Harvard CambridgeMAUSA and Biological Sciences EdmontonABCanada Division of Infectious Diseases Department of MedicineFaculty of Medicine and DentistryUniversity of AlbertaEdmontonABCanada Global Health Institute Faculty of Medicine and Health SciencesUniversity of AntwerpAntwerpBelgium A Division of the National Health Laboratory ServiceJohannesburgSouth Africa Sexually Transmitted Infection Unit Institute of Tropical MedicineAntwerpBelgium Third Affiliated Hospital Sun Yat-Sen UniversityGuangzhouChina Thermo Fisher Scientific LandsmeerThe Netherlands Mycology Unit and IISPV University Rovira i VirgiliReusTarragonaSpain

The family Ajellomycetaceae(Onygenales)includes mammal-associated pathogens within the genera Blastomyces,Emmonsia,Histoplasma and Paracoccidioides,as well as the recently described genera,Emergomyces that causes disease in immunocompromised hosts,and Emmonsiellopsis,known only from *** further assess the phylogenetic relationships among and between members of these genera and several previously undescribed species,we sequenced and analyzed the DNA-directed RNA polymerase II(rPB2),translation elongation factor 3-a(TEF3),b-tubulin(TUB2),28S large subunit rDNA(LSU)and the internal transcribed spacer regions(ITS)in 68 strains,in addition to morphological and physiological *** better understand the thermal dimorphism among these fungi,the dynamic process of transformation from mycelial to yeast-like or adiaspore-like forms was also assessed over a range of temperatures(6–42C).Molecular data resolved the relationships and recognized five major well-supported lineages that correspond largely to the genus ***,typified by Emmonsia parva,is a synonym of Blastomyces that also accommodates Blastomyces helicus(formerly Emmonsia helica).Emmonsia crescens is phylogenetically distinct,and found closely related to a single strain from soil without known *** silverae,Emergomyces canadensis,Emergomyces europaeus and Emmonsia sola are newly *** all of the taxa are associated with human and animal *** crescens,*** and *** are prevalently associated with pulmonary disease in humans or *** helicus,***,Emergomyces africanus,***,***,*** and ***(formerly Emmonsia pasteuriana)are predominantly found in human hosts with immune disorders;no animal hosts are known for these species except ***.

关键词： Ajellomycetaceae Onygenales Phylogeny Ecology Thermal dimorphism Systemic infection Taxonomy

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Novel Phialophora species from leaf-cutting ants (tribe Attini)

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Fungal Diversity 2014年第2期65卷 65-75页

作者： D.Attili-Angelis A.P.M.Duarte F.C.Pagnocca N.S.Nagamoto M.de Vries j.B.stielow G.S.de Hoog Center for the Study of Social Insects UNESP-São Paulo State UniversitySão PauloSPBrazil Division of Microbial Resources CPQBAUniversity of CampinasCampinasSPBrazil Department of Plant Protection UNESP-São Paulo State UniversityBotucatuSPBrazil Centraalbureau voor Schimmelcultures KNAW Fungal Biodiversity Centre UtrechtThe Netherlands Institute for Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands Sun Yat-sen Memorial Hospital Sun Yat-sen UniversityGuangzhouChina Research Center for Medical Mycology Peking University Health Science CenterBeijingChina Shanghai Institute of Medical Mycology Changzheng HospitalSecond Military Medical UniversityShanghaiChina Basic Pathology Department Federal University of ParanáStateCuritibaParanáBrazil King Abdulaziz University JeddahSaudi Arabia

Ants in the tribe Attini(Hymenoptera,Formicidae)maintain a 50 million-year-old lifestyle of co-evolution with symbiotic basidiomycetous fungi which they cultivate as essential source of ***,other microorganisms have been reported from ant habitats indicating a higher diversity of consistently associated species than established to ***,black yeast-like fungi have been reported as a possible symbiont,like a competitor of the actinomycete bacteria that grow in the integument of the *** the mating season,gynes of Atta capiguara and *** were collected from nests located in Botucatu,SP,Brazil and sampled using flotation *** analysis based on ITS,partial 28S(LSU)andβ-tubulin sequences revealed the occurrence of two novel species of Phialophora among the melanized fungi isolated.

关键词： Black yeasts Chaetothyriales Gynes Phialophora Cyphellophora Atta Ant cuticle Neotropical fungal ecology

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Phylogeny and taxonomy of meristematic rock-inhabiting black fungi in the Dothideomycetes based on multi-locus phylogenies

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Fungal Diversity 2014年第2期65卷 127-165页

作者： E.Egidi G.S.de Hoog D.Isola S.Onofri W.Quaedvlieg M.de Vries G.j.M.Verkley j.B.stielow L.Zucconi L.Selbmann Dipartimento di Scienze Ecologiche e Biologiche(DEB) Universitàdegli Studi della TusciaLargo dell’Universitàsnc01100 ViterboItaly Centraalbureau voor Schimmelcultures KNAW Fungal Biodiversity Centre UtrechtThe Netherlands Institute for Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands Sun Yat-sen Memorial Hospital Sun Yat-sen UniversityGuangzhouChina Research Center for Medical Mycology Peking University Health Science CenterBeijingChina Shanghai Institute of Medical Mycology Changzheng HospitalSecond Military Medical UniversityShanghaiChina Basic Pathology Department Federal University of ParanáStateCuritibaParanáBrazil King Abdulaziz University JeddahSaudi Arabia

The last decade has revealed an unexpected fungal diversity associated with natural rocks,often collected in environments influenced by harsh climatic *** the phylogenetic affiliations and the taxonomy of many of these extreme fungi,mainly within Dothideomycetes,the largest class of Ascomycota,have only partially been *** the present study we confirm that most rock inhabiting-fungi(RIF)are highly polyphyletic among Dothideomycetidae,mainly within the order Capnodiales,an order otherwise incorporating several families of major plant pathological *** taxa were identified within the two major and distinct clades of Teratosphaeriaceae,both comprising meristematic black *** one novel species and 13 new genera are proposed,based on ITS and partial nucLSU,RPB2 and BT2 sequences.

关键词： Black yeasts Capnodiales Meristematic fungi Microcolonial fungi Phylogeny Taxonomy

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Fungal diversity notes 1387-1511:taxonomic and phylogenetic contributions on genera and species of fungal taxa

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Fungal Diversity 2021年第6期111卷 1-335页

作者： Saranyaphat Boonmee Dhanushka N.Wanasinghe Mark S.Calabon Naruemon Huanraluek Sajini K.U.Chandrasiri Gareth E.B.jones Walter Rossi Marco Leonardi Sanjay K.Singh Shiwali Rana Paras N.Singh Deepak K.Maurya Ajay C.Lagashetti Deepika Choudhary Yu-Cheng Dai Chang-Lin Zhao Yan-Hong Mu Hai-Sheng Yuan Shuang-Hui He Rungtiwa Phookamsak Hong-Bo jiang María P.Martín Margarita Dueñas MTeresa Telleria Izabela L.Kałucka Andrzej M.jagodziński Kare Liimatainen Diana S.Pereira Alan j.L.Phillips Nakarin Suwannarach jaturong Kumla Surapong Khuna Saisamorn Lumyong Tarynn B.Potter Roger G.Shivas Adam H.Sparks Niloofar Vaghefi Mohamed A.Abdel-Wahab Faten A.Abdel-Aziz Guo-jie Li Wen-Fei Lin Upendra Singh Rajendra P.Bhatt Hyang Burm Lee Thuong T.T.Nguyen Paul M.Kirk Arun Kumar Dutta Krishnendu Acharya VVenkateswara Sarma M.Niranjan Kunhiraman C.Rajeshkumar Nikhil Ashtekar Sneha Lad Nalin N.Wijayawardene Darbe j.Bhat Rong-ju Xu Subodini N.Wijesinghe Hong-Wei Shen Zong-Long Luo jing-Yi Zhang Phongeun Sysouphanthong Naritsada Thongklang Dan-Feng Bao janith V.S.Aluthmuhandiram jafar Abdollahzadeh Alireza javadi Francesco Dovana Muhammad Usman Abdul Nasir Khalid Asha j.Dissanayake Anusha Telagathoti Maraike Probst Ursula Peintner Isaac Garrido-Benavent Lilla Bóna Zsolt Merényi Lajos Boros Bratek Zoltán jbenjamin stielow Ning jiang Cheng-Ming Tian Esmaeil Shams Farzaneh Dehghanizadeh Adel Pordel Mohammad javan-Nikkhah Teodor T.Denchev Cvetomir M.Denchev Martin Kemler Dominik Begerow Chun-Ying Deng Emma Harrower Tohir Bozorov Tutigul Kholmuradova Yusufjon Gafforov Aziz Abdurazakov jian-Chu Xu Peter E.Mortimer Guang-Cong Ren Rajesh jeewon Sajeewa S.N.Maharachchikumbura Chayanard Phukhamsakda Ausana Mapook Kevin D.Hyde Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China CIFOR-ICRAF China Program World Agroforestry(ICRAF)Kunming 650201YunnanPeople’s Republic of China Honghe Center for Mountain Futures Kunming Institute of BotanyHonghe CountyKunming 654400YunnanPeople’s Republic of China Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Saudi Arabia Section Environmental Sciences Department MeSVAUniversity of L’Aquila67100 CoppitoAQItaly National Fungal Culture Collection of India(NFCCI) Biodiversity and Palaeobiology GroupMACS Agharkar Research InstituteG.G.Agarkar RoadPune 411004India Institute of Microbiology School of Ecology and Nature ConservationBeijing Forestry UniversityBeijing 100083People’s Republic of China College of Biodiversity Conservation Southwest Forestry UniversityKunming 650224People’s Republic of China CAS Key Laboratory of Forest Ecology and Management Institute of Applied EcologyChinese Academy of SciencesShenyang 110164People’s Republic of China University of the Chinese Academy of Sciences Beijing 100049People’s Republic of China Centre for Mountain Futures(CMF) Kunming Institute of BotanyKunming 650201YunnanPeople’s Republic of China Department of Mycology Real Jardín Botánico-CSICPlaza de Murillo 228014 MadridSpain Department of Algology and Mycology Faculty of Biology and Environmental ProtectionUniversity of LodzBanacha 12/1690-237ŁódźPoland Institute of Dendrology Polish Academy of SciencesParkowa 562-035 KórnikPoland jodrell Laboratory Royal Botanic GardensKewRichmond TW93DSSurreyUK Faculdade de Ciências Biosystems and Integrative Sciences Institute(BioISI)Universidade de LisboaCampo Grande1749-016 LisbonPortugal Dep

This article is the 13th contribution in the Fungal Diversity Notes series,wherein 125 taxa from four phyla,ten classes,31 orders,69 families,92 genera and three genera incertae sedis are treated,demonstrating worldwide and geographic *** taxa described and illustrated in the present study include three new genera,69 new species,one new com-bination,one reference specimen and 51 new records on new hosts and new geographical *** new genera,Cylindrotorula(Torulaceae),Scolecoleotia(Leotiales genus incertae sedis)and Xenovaginatispora(Lindomycetaceae)are introduced based on distinct phylogenetic lineages and unique *** described species are Aspergillus lan-naensis,Cercophora dulciaquae,Cladophialophora aquatica,Coprinellus punjabensis,Cortinarius alutarius,***-latus,***,Coryneum fagi,Cruentomycena uttarakhandina,Cryptocoryneum rosae,Cyathus uniperidiolus,Cylindrotorula indica,Diaporthe chamaeropicola,Didymella azollae,Diplodia alanphillipsii,Dothiora coronicola,Efibula rodriguezarmasiae,Erysiphe salicicola,Fusarium queenslandicum,Geastrum gorgonicum,***,Helicosporium sexualis,Helminthosporium chiangraiensis,Hongkongmyces kokensis,Hydrophilomyces hydraenae,Hygrocybe boertmannii,Hyphoderma australosetigerum,Hyphodontia yunnanensis,Khaleijomyces umikazeana,Laboulbenia divisa,Laboulbenia triarthronis,Laccaria populina,Lactarius pallidozonarius,Lepidosphaeria strobelii,Longipedicellata megafusiformis,Lophiotrema lincangensis,Marasmius benghalensis,***,***,Mariannaea camelliae,Mel-anographium smilaxii,Microbotryum polycnemoides,Mimeomyces digitatus,Minutisphaera thailandensis,Mortierella solitaria,Mucor harpali,Nigrograna jinghongensis,Odontia huanrenensis,***,Paraconiothyrium ajrekarii,Par-afuscosporella niloticus,Phaeocytostroma yomensis,Phaeoisaria synnematicus,Phanerochaete hainanensis,Pleopunctum thailandicum,Pleurotheciella dimorphospora,Pseudochaetosphaeronema

关键词： 72 new taxa One new combination One reference specimen 51 new records Agaricomycetes Ascomycota Bartheletiomycetes Basidiomycota Dothideomycetes Eurotiomycetes Exobasidiomycetes Laboulbeniomycetes Leotiomycetes Mortierellomycetes Mortierellomycota Mucoromycetes Mucoromycota Phylogeny Sordariomycetes Taxonomy

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