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Taxonomy and phylogeny of dematiaceous coelomycetes

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Fungal diversity 2016年第2期77卷 1-316页

作者： Nalin N.Wijayawardene Kevin d.Hyde dhanushka N.Wanasinghe Moslem Papizadeh ishani d.goonasekara Erio Camporesi d.Jayarama Bhat Eric H.C.McKenzie Alan J.L.Phillips Paul diederich Kazuaki Tanaka Wen Jing Li Narumon Tangthirasunun Rungtiwa Phookamsak dong-Qin dai Asha J.dissanayake Gothamie Weerakoon Sajeewa S.N.Maharachchikumbura Akira Hashimoto Misato Matsumura Ali HBahkali Yong Wang department of Plant Pathology Agriculture CollegeGuizhou UniversityGuiyang 550025People’s Republic of China School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Center of Excellence in Fungal Research and School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of Sciences132 Lanhei RoadKunming 650201People’s Republic of China World Agroforestry Centre East and Central Asia132 Lanhei RoadKunming 650201YunnanPeople’s Republic of China Microorganisms Bank Iranian Biological Resource Center(IBRC)Academic Center for EducationCulture and Research(ACECR)TehranIran A.M.B.Gruppo Micologico Forlivese Antonio CicognaniVia Roma 18ForlìItaly A.M.B.Circolo Micologico Giovanni CariniC.P.314BresciaItaly Societàper gli Studi Naturalistici della Romagna C.P.144BagnacavalloRAItaly No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha 403108India department of Botany Goa UniversityGoa 403206India Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal Musée national d’histoire naturelle 25 rue MunsterL-2160 LuxembourgLuxembourg Faculty of Agriculture and Life Science Hirosaki University3 Bunkyo-choHirosakiAomori 036-8561Japan Laboratoire Interdisciplinaire des Energies de demain(LIEd) UniversitéParis Diderot5 rue Thomas-MannParis 75013France Guizhou Key Laboratory Agro-Bioengineering Guizhou UniversityGuiyangGuizhou 550025People’s Republic of China Center for Research and development of Fine Chemicals of Guizhou University Guiyang 550025People’s Republic of China Scientific Affiliate Integrative Research CenterScience&EducationThe Field MuseumChicagoILUSA Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesXiaohe DistrictGuiyang CityGuizhou Province 550006People’s R

t Coelomycetous fungi are an artificial taxonomic group which produce conidia inside a cavity i.***.conidiomata.Coelomycetes comprise about,1000 genera and 7000 species,which can be endophytic,pathogenic or saprobic.Traditional classification of coelomycetes was previously based on morphology,such as the shape of conidiomata and mode of conidiogenesis,while it was treated as a distinct group i.e.deuteromycotina.Sequence based taxonomic studies has been used to accommodate asexual fungi in a natural classification system,resolve generic boundaries of polyphyletic genera and species complexes,as well as establish asexual-sexual links.Nevertheless,most of genera lack sequence data,thus,morphology based identification is still important when introducing new genera or species.In this paper we illustrate,describe,and provide taxonomic notes for 235 dematiaceous coelomycetous genera,including five new genera viz.Apiculospora,didymellocamarosporium,Melanocamarosporium,Melnikia and Paulkirkia.Phylogenetic analyses of combined sequence data are provided to show placements of dematiaceous coelomycetes in dothideomycetes,Leotiomycetes and Sordariomycetes.One-hundred and fifty-two(65%)of genera have sequence data,thus,their taxonomic placement in a natural classification system,is listed as an outline.However,83 genera still lack sequence data,hence,they are treated as Ascomycota,genera incertae sedis.In addition,separate analyses are provided where better taxonomic resolution is needed.

关键词： Asexual fungi Conidiogenesis Morphology Multi-gene analyses

Towards a natural classification and backbone tree for Sordariomycetes

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Fungal diversity 2015年第3期72卷 199-301页

作者： Sajeewa S.N.Maharachchikumbura Kevin d.Hyde EBGareth Jones Eric H.C.McKenzie Shi-Ke Huang Mohamed A.Abdel-Wahab dinushani A.daranagama Monika dayarathne Melvina J.d’souza ishani d.goonasekara Sinang Hongsanan Ruvishika S.Jayawardena Paul M.Kirk Sirinapa Konta Jian-Kui Liu Zuo-Yi Liu Chada Norphanphoun Ka-Lai Pang Rekhani H.Perera Indunil C.Senanayake Qiuju Shang Belle damodara Shenoy Yuanpin Xiao Ali H.Bahkali Jichuan Kang Sayanh Somrothipol Satinee Suetrong Tingchi Wen Jianchu Xu Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Key Laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina World Agroforestry Centre East and Central Asia132 Lanhei RoadKunming 650201China Institute of Excellence in Fungal Research and School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China Guizhou UniversityGuiyang 550025Guizhou ProvincePeople’s Republic of China department of Botany Faculty of ScienceSohag UniversitySohag 82524Egypt Institute of Marine Biology and Centre of Excellence for the Oceans Taiwan Ocean University2 Pei-Ning RoadKeelung 20224TaiwanRepublic of China Mycology Section Royal Botanic GardensKewLondonUK Microbe Interaction Laboratory(BMIT) National Center for Genetic Engineering and Biotechnology(BIOTEC)113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum ThaniThailand Fungal diversity Laboratory(BFBd) National Center for Genetic Engineering and Biotechnology(BIOTEC)113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum ThaniThailand Biological Oceanography division CSIR-National Institute of OceanographyDona PaulaGoa 403004India Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo 9 of ShuGuangHuaYuanZhangLuHaidian DistrictBeijing 100097China

Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,and fungicolous,lichenized or lichenicolous taxa.The class includes freshwater,marine and terrestrial taxa and has a worldwide distribution.This paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class.Based on phylogeny and morphology we introduced three subclasses;diaporthomycetidae,Lulworthiomycetidae and Meliolomycetidae and five orders;Amplistromatales,Annulatascales,Falcocladiales,Jobellisiales and Togniniales.The outline is based on literature to the end of 2014 and the backbone tree published in this paper.Notes for 397 taxa with information,such as new family and genera novelties,novel molecular data published since the Outline of Ascomycota 2009,and new links between sexual and asexual genera and thus synonymies,are provided.The Sordariomycetes now comprises six subclasses,28 orders,90 families and 1344 genera.In addition a list of 829 genera with uncertain placement in Sordariomycetesis also provided.

关键词： Boliniales Calosphaeriales Chaetosphaeriales Coniochaetales Coronophorales diaporthales Glomerellales Hypocreomycetidae Hypocreales Koralionastetales Lulworthiales Magnaporthales Melanosporales Meliolales Microascales Molecular identification Nomenclature Ophiostomatales Phyllachorales Sordariales Sordariomycetidae Taxonomy Trichosphaeriales Type species Xylariales Xylariomycetidae

Towards unraveling relationships in Xylariomycetidae(Sordariomycetes)

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Fungal diversity 2015年第4期73卷 73-144页

作者： Indunil C.Senanayake Sajeewa S.N.Maharachchikumbura Kevin d.Hyde Jayarama d.Bhat E.B.Gareth Jones Eric H.C.McKenzie dong Qin dai dinushani A.daranagama Monika C.dayarathne ishani d.goonasekara Sirinapa Konta Wen Jing Li Qiu Ju Shang Marc Stadler Nalin N.Wijayawardene Yuan Pin Xiao Chada Norphanphoun Qirui Li Xing Zhong Liu Ali H.Bahkali Ji Chuan Kang Yong Wang Ting Chi Wen Lucile Wendt Jian Chu Xu Erio Camporesi Key Laboratory for Plant Biodiversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina East and Central Asia World Agroforestry CentreKunming 650201YunnanChina Centre of Excellence for Fungal Research Mae Fah Luang UniversityChiang RaiThailand Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo 31st West Beichen RoadChaoyang DistrictBeijing 100101China No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha 403108India department of Botany Goa UniversityGoa 403206India department of Botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Manaaki Whenua Landcare Research Private Bag 92170 AucklandNew Zealand Engineering Research Center for Southwest Bio-Pharmaceutical Resources Ministry of EducationGuizhou UniversityGuiyangGuizhou 550025China A.M.B.Gruppo Micologico Forlivese Antonio CicognaniVia Roma 18ForlìItaly A.M.B.Circolo Micologico Giovanni Carini314 BresciaItaly Societàper gli Studi Naturalistici della Romagna 144 BagnacavalloRAItaly department of Microbial drugs Helmholtz-Zentrum für Infektionsforschung GmbHInhoffenstrasse 738124 BraunschweigGermany department of Microbial drugs BraunschweigHelmholtz Centre for Infection Research(HZI)BraunschweigGermany

The classification of subclass Xylariomycetidae is revisited with additional collections and phylogeny based on novel rdNA sequence data.Phylogenetic inferences are provided and are based on analysis of 115 sequence data,including new data for 27 strains.An updated outline to the subclass is presented based on the phylogenies and comprises two orders,18 families and 222 genera.An account of each order,family and genus in the subclass is given.We accept the orders Amphisphaeriales and Xylariales based on morphological and phylogenetic evidence.Amphisphaeriales comprises Amphisphaeriaceae,Bartaliniaceae fam.nov.,Clypeosphaeriaceae,discosiaceae fam.nov.,Pestalotiopsidaceae fam.***.and Phlogicylindriaceae fam.nov.Xylariales comprises Apiosporaceae,Cainiaceae,Coniocessiaceae,diatrypaceae,Graphostromataceae(doubtful),Hyponectriaceae,Iodosphaeriaceae,Lopadostomaceae fam.nov.,Melogrammataceae,Pseudomassariaceae fam.nov.,Vialaeaceae and Xylariaceae.The new genera and species introduced are Arthrinium hyphopodii,A.subglobosa,Cainia anthoxanthis,Ciferriascosea gen.nov.,C.fluctamurum,C.rectamurum,discosia neofraxinea,d.pseudopleurochaeta,Hyalotiella rubi,Seimatosporium cornii,S.ficeae,S.vitis and Truncatella spartii.

关键词： Amphisphaeriales Apiosporaceae Bartaliniaceae Cainiaceae Ciferriascosea Clypeosphaeriaceae Coniocessiaceae discosiaceae diatrypaceae Hyponectriaceae Hypoxyloideae Iodosphaeriaceae Lopadostomaceae Melogrammataceae Pestalotiopsidaceae Phlogicylindriaceae Pseudomassariaceae Vialaeaceae Xylariaceae Xylarioideae

One stop shop IV: taxonomic update with molecular phylogeny for important phytopathogenic genera: 76-100 (2020)

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Fungal diversity 2020年第4期103卷 87-218页

作者： Ruvishika S.Jayawardena Kevin d.Hyde Yi Jyun Chen Viktor Papp Balázs Palla dávid Papp Chitrabhanu S.Bhunjun Vedprakash G.Hurdeal Chanokned Senwanna Ishara S.Manawasinghe dulanjalee L.Harischandra Ajay Kumar Gautam Shubhi Avasthi Boontiya Chuankid ishani d.goonasekara Sinang Hongsanan XiangYu Zeng Kapila K.Liyanage NingGuo Liu Anuruddha Karunarathna Kalani K.Hapuarachchi Thatsanee Luangharn Olivier Raspé Rashika Brahmanage Mingkwan doilom Hyang B.Lee Liu Mei Rajesh Jeewon Naruemon Huanraluek Napalai Chaiwan Marc Stadler Yong Wang department of Plant Pathology Agriculture CollegeGuizhou UniversityGuiyang 550025GuizhouChina Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang RaiThailand Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China department of Botany Szent István UniversityVillányiút 29-43Budapest 1118Hungary Plant Pathology and Plant-Microbe Biology Section Cornell UniversityGenevaNY 614456USA department of Pomology Szent István UniversityVillányiút 29-43Budapest 1118Hungary School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityNo.9 of ShuguanghuayuanzhongluChiang Mai 50200Thailand Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesHaidian DistrictHaidian DistrictBeijing 100097People’s Republic of China School of Agriculture Abhilashi UniversityMandiHimachal Pradesh 175028India School of Studies in Botany Jiwaji UniversityGwalior 474011India Guangdong Provincial Key Laboratory for Plant Epigenetics College of Life Sciences and OceanographyShenzhen UniversityShenzhen 518055PR China Environmental Microbiology Lab Dept.of Agricultural Biological ChemistryCollege of Agriculture and Life SciencesChonnam National UniversityGwangju 61186Korea department of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius department of Microbial drugs Helmholtz Centre for Infection ResearchInhoffenstraße 738124 BraunschweigGermany Honghe Innovation Center for Mountain Futures Kunming Institute of BotanyHonghe CountyYunnan 654400People’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Institute of Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225China Faculty of Agriculture Natural Resources and EnvironmentNaresuan Uni

This is a continuation of a series focused on providing a stable platform for the taxonomy of phytopathogenic fungi and fungus-like organisms.This paper focuses on one family:Erysiphaceae and 24 phytopathogenic genera:Armillaria,Barrio-psis,Cercospora,Cladosporium,Clinoconidium,Colletotrichum,Cylindrocladiella,dothidotthia,,Fomitopsis,Ganoderma,Golovinomyces,Heterobasidium,Meliola,Mucor,Neoerysiphe,Nothophoma,Phellinus,Phytophthora,Pseudoseptoria,Pythium,Rhizopus,Stemphylium,Thyrostroma and Wojnowiciella.Each genus is provided with a taxonomic background,distribution,hosts,disease symptoms,and updated backbone trees.Species confirmed with pathogenicity studies are denoted when data are available.Six of the genera are updated from previous entries as many new species have been described.

关键词： disease Plant pathology Phylogeny Taxonomy Symptoms

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Fungal diversity 2014年第6期69卷 147-170页

作者： Samantha C.Karunarathna Melvina d’souza Anupama deranagama Leela Maya Rizal Paul G.Mungai Jingzu Sun K.W.Thilini Chethana ishani d.goonasekara Asha Janadaree dissanayake W.M.d.N.Wanasinghe Kasun M.Thambugala dimuthu S.Manamgoda Huili Li Komsit Wisitrassameewong Saowaluck Tibpromma Rekhani H.Perera Sylas Lau Kevin d.Hyde Mae Fah Luang University 333 Moo 1ThasudMuangChiang Rai 57100Thailand

Fungi,as all other organisms need energy for their development and metabolic processes.They are very sensitive to and competitive for environmental resources.They assess their surroundings,both below and above ground and estimate how much energy they need for particular tasks,then realize the optimum variant.They have the ability to control certain environmental resources.They perceive themselves and can distinguish between other organisms.They process and evaluate information from surroundings and then modify their behavior accordingly.

关键词： processes. organisms. competitive

Natural history,clinical characteristics,outcomes,and long-term follow-up of pain-free chronic pancreatitis

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Gastroenterology Report 2023年第1期11卷 309-315页

作者： Awais Ahmed ishani Shah Rachel Bocchino Steven d.Freedman darshan J.Kothari Sunil G.Sheth department of Medicine Division of GastroenterologyBeth Israel Deaconess Medical CenterHarvard Medical SchoolBostonMAUSA department of Medicine Division of Internal MedicineBeth Israel Deaconess Medical CenterHarvard Medical SchoolBostonMAUSA department of Medicine Division of GastroenterologyDuke UniversityDurhamNCUSA

Background:Chronic pancreatitis(CP)is characterized by chronic abdominal pain and functional insufficiency.However,a small subset of patients with prior acute pancreatitis(AP)and/or underlying risk factors for developing CP may be pain-free at diagnosis and may have a different clinical course.We aimed to compare the clinical characteristics,outcomes,and healthcare utilization between CP patients with and without pain.Methods:Reviewed patients with established CP were followed in our Pancreas Center between January 2016 and April 2021.Patients without risk factors for developing CP and/or without AP prior to their diagnosis and only with incidental radiologic features of CP were excluded,so as tominimize confounding factors of pancreatopathy unrelated to CP.Patients were divided into painful and pain-free groups to analyze differences in demographics,outcomes,and healthcare utilization.Results:Of 368 CP patients,49(13.3%)were pain-free at diagnosis and had remained so for>9 years.There were no significant differences in body mass index,race,sex,or co-morbidities between the two groups.Pain-free patients were older at diagnosis(53.9 vs 45.7,P=0.004)and had less recurrent AP(RAP)(43.8%vs 72.5%,Pd less exocrine pancreatic insufficiency(EPI)(34.7%vs 65.7%,Pd less disability(2.2%vs 22.0%,P=0.003),mental illness(20.4%vs 61.0%,Pd therapeutic interventions(0.0%vs 16.4%,P=0.005)for pain.Conclusions:We described a unique subset of patients with underlying risk factors for CP and/or prior AP who were painfree at diagnosis.They were older at diagnosis,had less EPI and RAP,and overall favorable outcomes with minimal resource utilization.

关键词： chronic pancreatitis pain-free pancreatic insufficiency diabetes

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Fungal diversity 2016年第2期77卷 381-402页

作者： dhanushka N.Wanasinghe Sutakorn Kamolhan dinushani Anupama daranagama W.K.M.C.dayarathne Asha J.dissanayake ishani d.goonasekara K.K.Hapuarachchi Nimali Indiwaree de Silva Hasini Ekanayaka Subashini C.Jayasiri Samantha C.Karunarathna Rekhani H.Perera Chayanard Phukhamsakda Indunil C.Senanayake Qiuju Shang Thilini K.Wickremasinghe Jing Yang YuanPin Xiao Center of Excellence in Fungal Research School of ScienceMae Fah Luang University333 Moo 1ThasudMuangChiang Rai 57100Thailand department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand

Rating system Exceptional/brilliant Excellent Good Has merit Not worth reading Acanthamoeba:Biology and Pathogenesis(2nd edition)By Naveed Ahmed Khan The American Phytopathological Society Hardcover;334 pages;including 88 figures and 26 tables;ISBN:978-1-908230-50-8(hardcover)ISBN:978-1-908230-51-5(eBook)Acanthamoeba is an opportunistic protist pathogen,causing a blinding keratitis and fatal granulomatous encephalitis.Thus Acanthamoeba has gained increasing attention during the last few decades from the scientific communities,with cellular microbiology,environmental biology,physiology,cellular interactions,molecular biology,biochemistry and the evolutionary studies.

关键词： tables gained brilliant

Families of Sordariomycetes

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Fungal diversity 2016年第4期79卷 1-317页

作者： Sajeewa S.N.Maharachchikumbura Kevin d.Hyde E.B.Gareth Jones E.H.C.McKenzie Jayarama d.Bhat Monika C.dayarathne Shi-Ke Huang Chada Norphanphoun Indunil C.Senanayake Rekhani H.Perera Qiu-Ju Shang Yuanpin Xiao Melvina J.d’souza Sinang Hongsanan Ruvishika S.Jayawardena dinushani A.daranagama Sirinapa Konta ishani d.goonasekara Wen-Ying Zhuang Rajesh Jeewon Alan J.L.Phillips Mohamed A.Abdel-Wahab Abdullah M.Al-Sadi Ali H.Bahkali Saranyaphat Boonmee Nattawut Boonyuen Ratchadawan Cheewangkoon Asha J.dissanayake Jichuan Kang Qi-Rui Li Jian Kui Liu Xing Zhong Liu Zuo-Yi Liu JJennifer Luangsa-ard Ka-Lai Pang Rungtiwa Phookamsak Itthayakorn Promputtha Satinee Suetrong Marc Stadler Tingchi Wen Nalin N.Wijayawardene Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Center of Excellence in Fungal Research and School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand department of Crop Sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityP.O.Box 34Al-Khod 123Oman department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha403108 GoaIndia department of Botany Goa UniversityGoa 403206India Engineering Research Center of Southwest Bio-Pharmaceutical Resources Ministry of EducationGuizhou UniversityGuiyang 550025Guizhou ProvinceChina Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo 9 of ShuGuangHuaYuanZhangLuHaidian District Beijing 100097China State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101China department of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal department of Botany Faculty of ScienceSohag UniversitySohagEgypt Fungal Biodiversity Laboratory BIOTECNational Science and Technology Development Agency(NSTDA)113 Thailand Science ParkThanon PhahonyothinTombon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand department of Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand department of Pharmacy Guiyang Medical UniversityGuiyangGuizhou 550025China Microbe Interaction Laboratory BIOTECNational Science and Technology Development Agency(NSTDA)113 Thailand Science ParkThanon PhahonyothinTombon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand Institute of Marine Biology and Center of Excell

Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,coprophilous and fungicolous,lichenized or lichenicolous taxa.They occur in terrestrial,freshwater and marine habitats worldwide.This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci,with a maximum five representative taxa from each family,where available.This paper brings together for the first time,since Barrs’1990 Prodromus,descriptions,notes on the history,and plates or illustrations of type or representative taxa of each family,a list of accepted genera,including asexual genera and a key to these taxa of Sordariomycetes.delineation of taxa is supported where possible by molecular data.The outline is based on literature to the end of 2015 and the Sordariomycetes now comprises six subclasses,32 orders,105 families and 1331 genera.The family Obryzaceae and Pleurotremataceae are excluded from the class.

关键词： Amplistromatales Annulatascales Boliniales Calosphaeriales Chaetosphaeriales Coniochaetales Conioscyphales Cordanales Coronophorales diaporthales Falcocladiales Glomerellales Hypocreales Jobellisiales Koralionastetales Lulworthiales Magnaporthales Melanosporales Meliolales Microascales Ophiostomatales Phylogeny Phyllachorales Pisorisporiales Pleurotheciales Sordariales Savoryellales Tirisporellales Togniniales Torpedosporales Trichosphaeriales Taxonomy Trichosphaeriales Type species Xylariales

Evaluating the accuracy of American Society for Gastrointestinal Endoscopy guidelines in patients with acute gallstone pancreatitis with choledocholithiasis

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World Journal of Gastroenterology 2022年第16期28卷 1692-1704页

作者： Supisara Tintara ishani Shah William Yakah Awais Ahmed Cristina S Sorrento Cinthana Kandasamy Steven d Freedman darshan J Kothari Sunil G Sheth department of Internal Medicine Beth Israel Deaconess Medical CenterHarvard Medical SchoolBostonMA 02215United States division of Gastroenterology&Hepatology Beth Israel Deaconess Medical CenterHarvard Medical SchoolBostonMA 02215United States division of Gastroenterology Duke University Medical CenterDurhamNC 27710United States division of Gastroenterology Durham VA Medical CenterDurhamNC 27705United States

BACKGROUNd Acute gallstone pancreatitis(AGP) is the most common cause of acute pancreatitis(AP) in the United States. Patients with AGP may also present with choledocholithiasis. In 2010, the American Society for Gastrointestinal Endoscopy(ASGE) suggested a management algorithm based on probability for choledocholithiasis, recommending additional imaging for patients at intermediate risk and endoscopic retrograde cholangiopancreatography(ERCP) for patients at high risk of choledocholithiasis. In 2019, the ASGE guidelines were updated using more specific criteria to categorize individuals at high risk for choledocholithiasis. Neither ASGE guideline has been studied in AGP to determine the probability of having choledocholithiasis.AIM To determine compliance with ASGE guidelines, assess outcomes, and compare 2019 vs 2010 ASGE criteria for suspected choledocholithiasis in AGP.METHOdS We conducted a retrospective cohort study of 882 patients admitted with AP to a single tertiary care center from 2008-2018. AP was diagnosed using revised Atlanta criteria and AGP was defined as the presence of gallstones on imaging or with cholestatic pattern of liver injury in the absence of another cause. Patients with chronic pancreatitis and pancreatic malignancy were excluded as were those who went directly to cholecystectomy prior to assessment for choledocholithiasis. Patients were assigned low, intermediate or high risk based on ASGE guidelines. Our primary outcomes of interest were the proportion of patients in the intermediate risk group undergoing magnetic resonance cholangiopancreatography(MRCP) first and the proportion of patients in the high risk group undergoing ERCP directly without preceding imaging. Secondary outcomes of interest included outcome differences based on if guidelines were not adhered to. We then evaluated the diagnostic accuracy of 2019 in comparison to the 2010 ASGE criteria for patients with suspected choledocholithiasis. We performed the t test or Wilcoxon rank sum test, as appropriate, to analyze if

关键词： American Society for Gastrointestinal Endoscopy guidelines Choledocholithiasis Acute gallstone pancreatitis Endoscopic retrograde cholangiopancreatography Magnetic resonance cholangiopancreatography