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Question-Answering Pair Matching Based on Question Classification and Ensemble Sentence Embedding

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Computer Systems Science & Engineering 2023年第9期46卷 3471-3489页

作者： Jae-Seok Jang hyuk-yoon Kwon Department of Computer Science and Engineering Seoul National University of Science and TechnologySeoul01811Korea Department of Industrial Engineering/Graduate School of Data Science Seoul National University of Science and TechnologySeoul01811Korea

Question-answering(QA)models find answers to a given *** necessity of automatically finding answers is increasing because it is very important and challenging from the large-scale QA data *** this paper,we deal with the QA pair matching approach in QA models,which finds the most relevant question and its recommended answer for a given *** studies for the approach performed on the entire dataset or datasets within a category that the question writer manually *** contrast,we aim to automatically find the category to which the question belongs by employing the text classification model and to find the answer corresponding to the question within the *** to the text classification model,we can effectively reduce the search space for finding the answers to a given ***,the proposed model improves the accuracy of the QA matching model and significantly reduces the model inference ***,to improve the performance of finding similar sentences in each category,we present an ensemble embedding model for sentences,improving the performance compared to the individual embedding *** real-world QA data sets,we evaluate the performance of the proposed QA matching *** a result,the accuracy of our final ensemble embedding model based on the text classification model is 81.18%,which outperforms the existing models by 9.81%∼14.16%***,in terms of the model inference speed,our model is faster than the existing models by 2.61∼5.07 times due to the effective reduction of search spaces by the text classification model.

关键词： Question-answering text classification model data augmentation text embedding

Regeneration-associated macrophages： a novel approach to boost intrinsic regenerative capacity for axon regeneration

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Neural Regeneration Research 2016年第9期11卷 1368-1371页

作者： Min Jung Kwon hyuk Jun yoon Byung Gon Kim Department of Brain Science Ajou University School of Medicine Suwon Republic of Korea Department of Neurology Ajou University School of Medicine Suwon Republic of Korea Neuroscience Graduate Program Department of Biomedical Sciences Ajou University Graduate School of Medicine Suwon Republic of Korea

Axons in central nervous system （CNS） do not regenerate spontaneously after injuries such as stroke and traumatic spinal cord iniury. Both intrinsic and extrinsic factors are responsible for the regeneration fail- ure, Although intensive research efforts have been invested on extrinsic regeneration inhibitors, the extent to which glial inhibitors contribute to the regeneration failure in viva still remains elusive. Recent exper- imental evidence has rekindled interests in intrinsic factors for the regulation of regeneration capacity in adult mammals. In this review, we propose that activating macrophages with pro-regenerative molecular signatures could be a novel approach for boosting intrinsic regenerative capacity of CNS neurons. Using a conditioning injury model in which regeneration of central branches of dorsal root ganglia sensory neu- rons is enhanced by a preceding injury to the peripheral branches, we have demonstrated that perineuronal macrophages surrounding dorsal root ganglia neurons are critically involved in the maintenance of en- hanced regeneration capacity. Neuron-derived chemokine （C-C motif） ligand 2 （CCL2） seems to mediate neuron-macrophage interactions conveying injury signals to perineuronal macrophages taking on a soley pro-regenerative phenotype, which we designate as regeneration-associated macrophages （RAMs）. Ma- nipulation of the CCL2 signaling could boost regeneration potential mimicking the conditioning injury, suggesting that the chemokine-mediated RAM activation could be utilized as a regenerative therapeutic strategy for CNS injuries.

关键词： axon regeneration conditioning injury neuron-macrophage interaction regeneration-associatedmacrophage cAMP CCL2 M2 polarization spinal cord injury

BitmapAligner:Bit-Parallelism String Matching with MapReduce and Hadoop

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Computers, Materials & Continua 2021年第9期68卷 3931-3946页

作者： Mary Aksa Junaid Rashid Muhammad Wasif Nisar Toqeer Mahmood hyuk-yoon Kwon Amir Hussain Department of Computer Science COMSATS University IslamabadWah47040Pakistan Department of Computer Science AIR University IslamabadAerospace and Aviation Campus Kamra43570Pakistan Department of Computer Science National Textile UniversityFaisalabad37610Pakistan Department of Industrial Engineering and Research Center for Electrical and Information Technology Seoul National University of Science and TechnologyNowon-GuSeoul01811Korea Data Science and Cyber Analytics Research Group Edinburgh Napier UniversityEdinburghEH114DYUK

Advancements in next-generation sequencer(NGS)platforms have improved NGS sequence data production and reduced the cost involved,which has resulted in the production of a large amount of genome *** downstream analysis of multiple associated sequences has become a bottleneck for the growing genomic data due to storage and space utilization issues in the domain of *** traditional string-matching algorithms are efficient for small sized data sequences and cannot process large amounts of data for downstream *** study proposes a novel bit-parallelism algorithm called BitmapAligner to overcome the issues faced due to a large number of sequences and to improve the speed and quality of multiple sequence alignment(MSA).The input files(sequences)tested over BitmapAligner can be easily managed and organized using the Hadoop distributed file *** proposed aligner converts the test file(the whole genome sequence)into binaries of an equal length of the sequence,line by line,before the sequence alignment *** Hadoop distributed file system splits the larger files into blocks,based on a defined block size,which is 128 MB by *** can accurately process the sequence alignment using the bitmask approach on large-scale sequences after sorting the *** experimental results indicate that BitmapAligner operates in real time,with a large number of ***,BitmapAligner achieves the exact start and end positions of the pattern sequence to test the MSA application in the whole genome query *** MSA’s accuracy is verified by the bitmask indexing property of the bit-parallelism extended shifts(BXS)*** dynamic and exact approach of the BXS algorithm is implemented through the MapReduce function of Apache ***,the traditional seeds-and-extend approach faces the risk of errors while identifying the pattern sequences’***,the proposed model resolves the largescale data challen

关键词： Next-generation sequencing multiple sequence alignment MapReduce Hadoop whole-genome big data bit-parallelism

Two-year delay in ulcerative colitis diagnosis is associated with anti-tumor necrosis factor alpha use

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World Journal of Gastroenterology 2019年第8期25卷 989-1001页

作者： Ho Suk Kang Ja-Seol Koo Kang Moon Lee Dae-Bum Kim Ji Min Lee yoon Jae Kim hyuk yoon Hyun Joo Jang Department of Internal Medicine Hallym Sacred Heart HospitalHallym University College of MedicineAnyang 14068South Korea Division of Gastroenterology and Hepatology Department of Internal MedicineKorea University Ansan HospitalDepartment of Internal MedicineKorea University College of MedicineAnsan 15355South Korea Department of Internal Medicine The Catholic University of KoreaSt.Vincent’s HospitalSuwon 16247South Korea Department of Gastroenterology Gachon Graduate School of Medicine Gil Medical CenterIncheon 21565South Korea Department of Internal Medicine Seoul National University Bundang HospitalSeongnam 13620South Korea Division of Gastroenterology Department of Internal MedicineDongtan Sacred Heart HospitalHallym University College of MedicineHwaseong 18450South Korea

BACKGROUND Ulcerative colitis(UC)is an uncommon inflammatory bowel disease(IBD).However,its incidence has recently increased in South ***,UC diagnoses are frequently delayed,and the relationship between diagnostic delay and UC prognosis has not been extensively studied in South Korean *** To identify meaningful diagnostic delay affecting UC prognosis and to evaluate risk factors associated with diagnostic delay in South Korean *** Medical records of 718 patients with UC who visited the outpatient clinic of six university hospitals in South Korea were reviewed;167 cases were excluded because the first symptom date was *** evaluated the relationship between the prognosis and a diagnostic delay of 3,6,12,18,and 24 mo by comparing the prognostic factors[anti-tumor necrosis factor(TNF)-αuse,admission history due to acute flare-ups,frequent admission due to flare-ups,surgery associated with UC,and the clinical remission state at the latest followup]at each diagnostic *** The mean diagnostic interval was 223.3±483.2 d(median,69 d;75th percentile,195 d).Among the prognostic factors,anti-TNFαuse was significantly increased after a diagnostic delay of 24 *** risk factors predictive of a 24-mo diagnostic delay were age24 mo was associated with increased anti-TNFα***<60 years at diagnosis,smoking history,and misdiagnosis of hemorrhoids were risk factors for delayed diagnosis.

关键词： Ulcerative colitis Diagnostic delay Anti-tumor necrosis factor alpha Smoking

Sex-based differences in histology,staging,and prognosis among 2983 gastric cancer surgery patients

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World Journal of Gastroenterology 2022年第9期28卷 933-947页

作者： Yonghoon Choi Nayoung Kim Ki Wook Kim Hyeong Ho Jo Jaehyung Park hyuk yoon Cheol Min Shin Young Soo Park Dong Ho Lee Hyeon Jeong Oh Hye Seung Lee Young Suk Park Sang-Hoon Ahn Yun-Suhk Suh Do Joong Park Hyung-Ho Kim Ji-Won Kim Jin Won Kim Keun-Wook Lee Won Chang Ji HoonPark yoon Jin Lee Kyoung Ho Lee Young Hoon Kim Department ofInternal Medicine Seoul National University Bundang HospitalSeongnam 13620South Korea Nayoung Department of Internal Medicine Seoul National University College of MedicineSeoul 03080South Korea Department of Pathology Seoul National University Bundang HospitalSeongnam 13620South Korea Department of Pathology Seoul National University College of MedicineSeoul 03080South Korea Department of Surgery Seoul National University Bundang HospitalSeongnam 13620South Korea Department of Surgery Seoul National University College of MedicineSeoul 03080South Korea Department of Radiology Seoul National University Bundang HospitalSeongnam 13620South Korea Department of Radiology Seoul National University College of MedicineSeoul 03080South Korea

BACKGROUND Few studies have been conducted on sex differences in the incidence, pathophysiology, and prognosis of gastric cancer(GC).AIM To analyze the differences in GC characteristics according to sex in patients who underwent surgical treatment for *** A total of 2983 patients diagnosed with gastric adenocarcinoma who received surgical treatment at the Seoul National University Bundang Hospital between 2003 and 2017 were *** clinicopathological characteristics, histologic type of GC, overall and GC-specific survival rates, and associated risk factors were *** Among the 2983 patients, 2005(67.2%) and 978(32.8%) were males and females, *** average age of the female group(59.36 years) was significantly younger than that of the male group(61.66 years;P < 0.001).Cancer of the gastric body(P < 0.001) and diffuse-type histology(P < 0.001) were more common in females than in *** trend was more prominent in females younger than 60 years of age, with a significantly higher proportion of diffuse-type cancer than in the male *** of sex, diffuse-type GC was more common in younger patients, and the proportion of intestinal-type GC increased with *** overall survival rate was significantly higher in females(P < 0.001).However, this difference disappeared for GC-specific survival(P = 0.168), except for the poor GC-specific survival rate in advanced-stage cancer(stage Ⅲ or above) in females(P = 0.045).The risk factors for GC-related mortality were older age, upper location of GC, and diffuse-or mixed-type *** terms of comorbidities, more males died from diseases other than GC, including other malignancies such as lung cancer, hepatocellular carcinoma, and pancreatic cancer, and respiratory diseases such as interstitial lung disease and chronic obstructive pulmonary disease, while there were relatively more cardiovascular or cerebrovascular deaths in *** Sex-based differences in GC were

关键词： Gastric cancer Histology Prognosis Sex difference Survival

New approaches to gastric cancer staging:Beyond endoscopic ultrasound,computed tomography and positron emission tomography

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World Journal of Gastroenterology 2014年第38期20卷 13783-13790页

作者： hyuk yoon Dong Ho Lee Department of Internal Medicine Seoul National University Bundang Hospital Department of Internal Medicine and Liver Research Institute Seoul National University College of Medicine

Currently,there is no single gold standard modality for staging of gastric cancer and several methods have been used complementarily in the each clinical situation. To make up for the shortcomings of conventional modalities such as endoscopic ultrasound,computed tomography and 18F-fluoro-2-deoxyglucose positron emission tomography,numerous attempts with new approaches have been made for gastric cancer staging. For T staging,magnifying endoscopy with narrow-band was evaluated to differentiate mucosal cancer from submucosal cancer. Single/double contrast-enhanced ultrasound and diffusion-weighted magnetic resonance imaging were also tried to improve diagnostic accuracy of gastric cancer. For intraoperative staging with sentinel node mapping,indocyanine green infrared and fluorescence imaging was introduced. In addition,to detect micrometastasis,real-time reverse transcription-polymerase chain reaction system with multiple markers was *** laparoscopy using 5-aminolevulinic acid-mediated photodynamic diagnosis and percutaneous diagnostic peritoneal lavage were also ***,most studies reporting new staging methods is preliminary and further studies for validation in clinical practice are *** this mini-review,we discuss new progress in gastric cancer ***,we focus on new diagnostic approach to gastric cancer staging beyond the conventional modalities and briefly review the remarkable clinical results of the studies published over the past three years.

关键词： Gastric cancer Neoplasm staging Diagnos-tic accura

Vomiting-induced pharyngeal perforation during bowel preparation for colonoscopy:A case report

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World Journal of Clinical Cases 2024年第18期12卷 3615-3621页

作者： Geonhee Kim Won hyuk Lee Seokin Kang Jung Rock Moon yoon Suk Lee Jun hyuk Son Nam-Hoon Kim Jong Wook Kim Department of Internal Medicine Ilsan Paik HospitalInje University College of MedicineGoyang 10380South Korea

BACKGROUND Effective bowel cleansing is essential for a successful ***,such as polyethylene glycol,are commonly used for bowel *** is a frequent complication during bowel preparation,and forceful vomiting can potentially lead to esophageal perforation,as reported in several previous ***,pharyngeal perforation during bowel preparation has not been previously ***,we present a case of pharyngeal perforation induced by forceful vomiting during bowel *** SUMMARY A 38-year-old man with a history of hypertension,dyslipidemia,diabetes mellitus,and end-stage renal disease on hemodialysis was admitted for evaluation of recurrent abdominal *** patient complained of sudden pain in the neck,throat,and anterior chest following forceful vomiting during bowel *** examination revealed crepitus under the skin of the neck and anterior chest on palpation,and upper gastrointestinal endoscopy revealed pharyngeal *** perforation site was located above the upper esophageal sphincter,which distinguished it from Boerhaave’s *** medical management was chosen after consultation with a thoracic surgeon and an otolaryngologist,considering the patient's mild symptoms,stable vital signs,and the small size of the lesion;the perforation resolved without endoscopic or surgical *** patient was discharged from hospital two weeks after the *** Despite its rarity,pharyngeal perforation should be considered a potential complication of bowel preparation for colonoscopy.

关键词： Colonoscopy Pharynx Polyethylene glycols Spontaneous perforation Case report

Sex-and gender-specific disparities in colorectal cancer risk

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World Journal of Gastroenterology 2015年第17期21卷 5167-5175页

作者： Sung-Eun Kim Hee Young Paik hyuk yoon Jung Eun Lee Nayoung Kim Mi-Kyung Sung Department of Food and Nutrition Sookmyung Women’s UniversitySeoul 140-742South Korea Department of Food and Nutrition Seoul National UniversitySeoul 151-742South Korea Department of Internal Medicine Seoul National University Bundang HospitalSeongnam 463-707South Korea

Colorectal cancer is one of the most common causes of cancer morbidity both in men and in ***,females over 65 years old show higher mortality and lower 5-year survival rate of colorectal cancer compared to their age-matched male *** objective of this review is to suggest gender-based innovations to improve colorectal cancer outcomes in *** have a higher risk of developing right-sided(proximal) colon cancer than men,which is associated with more aggressive form of neoplasia compared to left-sided(distal) colon *** differences in tumor location between women and men,most of scientific researchers do not consider sex specificity for study design and ***,colorectal cancer screening guidelines do not distinguish females from male,which may explain the higher frequency of more advanced neoplasia when tumors are first detected and false negative results in colonoscopy in ***,socio-cultural barriers within females are present to delay screening and *** studies,among studies that included both men and women,have reported sex-specific estimates of dietary risk factors which are crucial to establish cancer prevention guidelines despite sex-and genderassociated differences in nutrient metabolism and dietary ***,anti-cancer drug use for colorectal cancer treatment can cause toxicity to the reproductive system,and gender-specific recurrence and survival rates are ***,by understanding sex-and gender-related biological and socio-cultural differences in colorectal cancer risk,gender-specific strategies for screening,treatment and prevention protocols can be established to reduce the mortality and improve the quality of life.

关键词： Colorectal cancer Sex Gender Screening Treatment Prevention

Efficacy of moxifloxacin-based sequential and hybrid therapy for first-line Helicobacter pylori eradication

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World Journal of Gastroenterology 2015年第35期21卷 10234-10241页

作者： Jae Jin Hwang Dong Ho Lee Ae-Ra Lee hyuk yoon Cheol Min Shin Young Soo Park Nayoung Kim Department of Internal Medicine Seoul National University Bundang Hospital

AIM: To evaluate the efficacy of moxifloxacin-based sequential therapy(MBST) versus hybrid therapy as a first-line treatment for Helicobacter pylori(H. pylori) ***: From August 2014 to January 2015, 284 patients with confirmed H. pylori infection were randomized to receive a 14-d course of MBST(MBST group, n = 140) or hybrid(Hybrid group, n = 144) therapy. The MBST group received 20 mg rabeprazole and 1 g amoxicillin twice daily for 7 d, followed by 20 mg rabeprazole and 500 mg metronidazole twice daily, and 400 mg moxifloxacin once daily for 7 d. The Hybrid group received 20 mg rabeprazole and 1 g amoxicillin twice daily for 14 d. In addition, the Hybrid group received 500 mg metronidazole and 500 mg clarithromycin twice daily for the final 7 d. Successful eradication of H. pylori infection was defined as a negative 13C-urea breath test 4 wk after the end of treatment. Patient compliance was defined as "good" if drug intake was at least 85%. H. pylori eradication rates, patient compliance with treatment, and adverse event rates were ***: The eradication rates in the intention-totreat(ITT) analysis were 91.4%(128/140; 95%CI: 90.2%-92.9%) in the MBST group and 79.2%(114/144; 95%CI: 77.3%-80.7%) in the Hybrid group(P = 0.013). The eradication rates in the perprotocol(PP) analysis were 94.1%(128/136; 95%CI: 92.9%-95.6%) in the MBST group and 82.6%(114/138; 95%CI: 80.6%-84.1%) in the Hybrid group(P = 0.003). The H. pylori eradication rate in the MBST group was significantly higher than that of the Hybrid group for both the ITT(P = 0.013) and the PP analyses(P = 0.003). Both groups exhibited full compliance with treatment(MBST/Hybrid group: 100%/100%). The rate of adverse events was 11.8%(16/136) and 19.6%(27/138) in the MBST and Hybrid group, respectively(P = 0.019). The majority of adverse events were mild-to-moderate in intensity; none were severe enough to cause discontinuation of treatment in either ***: MBST was more effecti

关键词： Helicobacter pylori First-line treatment eradicati