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Molecular phylogeny,biogeography and character evolution of the montane genus Incarvillea Juss.(Bignoniaceae)

Plant Diversity 2021年第1期43卷 1-14页

作者： Santosh Kumar rana Dong Luo hum kala rana Shaotian Chen Hang Sun CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201China University of the Chinese Academy of Sciences Beijing 100049China College of Pharmaceutical Science Yunnan University of Chinese MedicineKunming 650500China

The complex orogeny of the Himalaya and the Qinghai-Tibet Plateau(QTP)fosters habitat fragmentation that drives morphological differentiation of mountain plant ***,determining phylogenetic relationships between plant subgenera using morphological characters is ***,we used both molecular phylogeny and historical biogeographic analysis to infer the ancestral states of several vegetative and reproductive characters of the montane genus *** determined the taxonomic position of the genus Incarvillea within its family and inferred the biogeographical origin of taxa through Bayesian inference(BI),maximum likelihood(ML)and maximum parsimony(MP)analyses using three molecular data sets(trnL-trnF sequences,nr ITS sequences,and a data set of combined sequences)derived from 81%of the total species of the genus *** the genus-level phylogenetic framework,we examined the character evolution of 10 key morphological characters,and inferred the ancestral area and biogeographical history of the *** analyses revealed that the genus Incarvillea is monophyletic and originated in Central Asia during mid-Oligocene ca.29.42 *** earliest diverging lineages were subsequently split into theWestern Himalaya and Sino-Himalaya during the early Miocene ca.21.12 *** lineages resulted in five re-circumscribed subgenera(Amphicome,Olgaea,Niedzwedzkia,Incarvillea,and Pteroscleris).Moreover,character mapping revealed the ancestral character states of the genus Incarvillea(e.g.,suffruticose habit,cylindrical capsule shape,subligneous capsule texture,absence of capsule wing,and loculicidal capsule dehiscence)that are retained at the earliest diverging ancestral nodes across the *** phylogenetic tree of the genus Incarvillea differs from previously proposed phylogenies,thereby recommending the placement of the subgenus Niedzwedzkia close to the subgenus Incarvillea and maintaining two main divergent lineages.

关键词： Biodiversity hotspots Biogeography Incarvillea Molecular phylogeny Phytools Stochastic character mapping

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Determining bioclimatic space of Himalayan alder for agroforestry systems in Nepal

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Plant Diversity 2018年第1期40卷 1-18页

作者： Santosh Kumar rana hum kala rana Krishna Kumar Shrestha Suresh Sujakhu Sailesh Ranjitkar Key Laboratory{or Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyKunming 650201China University of Chinese Academy of Sciences Beijing 100049China Systematics and Biodiversity Unit Central Department of BotanyTribhuvan UniversityKirtipurKathmanduNepal jade Consult Private Limited KabilmargThapathaliKathmanduPOB 746Nepal World Agroforestry Centre East and Central Asia 132 Lanhei RdHeilongtanKunmingChina

Himalayan alder species are proven to be very useful in traditional as well as contemporary agroforestry practice. These nitrogen-fixing trees are also useful in the land restoration. Therefore, understanding the distribution of Himalayan alder and the potential zone for plantation is meaningful in the agroforestry sector. Suitable climatic zones of Alnus spp. were modelled in Max Ent software using a subset of least correlated bioclimatic variables for current conditions(1950 -2000), topographic variables(DEM derived) and Landuse Landcover(LULC) data. We generated several models and selected the best model against random models using ANOVA and t-test. The environmental variables that best explained the current distribution of the species were identified and used to project into the future. For future projections, ensemble scenarios of climate change projection derived from the results of 19 Earth System Models(ESM) were used. Our model revealed that the most favorable conditions for Alnus nepalensis are in central Nepal in the moist north-west facing slope, whereas for Alnus nitida they are in western *** major climatic factor that contributes to Alnus species distribution in Nepal appears to be precipitation during the warmest quarter for A. nepalensis and precipitation during the driest quarter for A. nitida. Future projections revealed changes in the probability distribution of these species, as well as where they need conservation and where they can be planted. Also, our model predicts that the distribution of Alnus spp. in hilly regions will remain unchanged, and therefore may represent sites that can be used to revitalize traditional agroforestry systems and extract source material for land restoration.

关键词： Alder Agroforestry Species distribution modeling Climate change MaxEnt

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Pleistocene glaciation advances the cryptic speciation of Stellera chamaejasme *** a major biodiversity hotspot

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Journal of Integrative Plant Biology 2024年第6期66卷 1192-1205页

作者： Santosh Kumar rana hum kala rana Jacob BLandis Tianhui Kuang Juntong Chen Hengchang Wang Tao Deng Charles C.Davis Hang Sun CAS Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201China Arkansas Biosciences Institute Arkansas State UniversityJonesboroArkansas 72401USA School of Integrative Plant Science Section of Plant Biology and the L.H.Bailey HortoriumCornell UniversityIthacaNew York 14853USA BTI Computational Biology Center Boyce Thompson InstituteIthacaNew York 14853USA CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture Chinese Academy of SciencesWuhan Botanical GardenWuhan 430074China Department of Organismic and Evolutionary Biology HerbariaHarvard UniversityCambridgeMassachusetts 02138USA

The mountains of Southwest China comprise a significant large mountain range and biodiversity hotspot imperiled by global climate *** high species diversity in this mountain system has long been attributed to a complex set of factors,and recent large-scale macroevolutionary investigations have placed a broad timeline on plant diversification that stretches from 10 million years ago(Mya)to the *** our increasing understanding of the temporal mode of speciation,finer-scale populationlevel investigations are lacking to better refine these temporal trends and illuminate the abiotic and biotic influences of cryptic *** is largely due to the dearth of organismal sampling among closely related species and populations,spanning the incredible size and topological heterogeneity of this *** study dives into these evolutionary dynamics of speciation using genomic and ecomorphological data of Stellera chamaejasme *** identified four previously unrecognized cryptic species having indistinct morphological traits and large metapopulation of evolving lineages,suggesting a more recent diversification(~2.67-0.90 Mya),largely influenced by Pleistocene glaciation and biotic *** factors likely influenced allopatric speciation and advocated cyclical warming–cooling episodes along elevational gradients during the *** study refines the evolutionary timeline to be much younger than previously implicated and raises the concern that projected future warming may influence the alpine species diversity,necessitating increased conservation efforts.

关键词： cryptic speciation glacial-interglacial Hengduan Mountains north-south migration Stellera chamaejasme

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Predicting the impact of climate change on the distribution of two threatened Himalayan medicinal plants of Liliaceae in Nepal

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Journal of Mountain Science 2017年第3期14卷 558-570页

作者： rana Santosh Kumar rana hum kala GHIMIRE Suresh Kulllar SHRESTHA Krishna Kumar RANJITKAR Sailesh Key Laboratory for Plant Diversity and Biogeography of EastAsia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201China University of Chinese Academy of Sciences Beijing 100049China Central Department of Botany Tribhuvan UniversityKirtipurKathmanduNepal World Agroforestry Centre East and Central Asia 132 Lanhei RdHeilongtanKunming 650201China

Predicting the potential distribution of medicinal plants in response to climate change is essential for their conservation and management. Contributing to the management program, this study aimed to predict the distribution of two threatened medicinal plants, Fritillaria cirrhosa and Lilium nepalense. The location of focal species gathered from herbarium specimen housed in different herbaria and online databases were geo-referenced and checked for spatial autocorrelation. The predictive environmental variables were selected, and MaxEnt software was used to model the current and future distributions of focal species. Four Representative Concentration Pathway （RCP） trajectories of the BCC-CSMI.1 model were used as the future （2050） projection layer. The MaxEnt modelling delineated the potential distribution of F. cirrhosa and L. nepalense. The current suitability is projected towards Central and Eastern Hilly/Mountainous regions. Both species gain maximum suitability in RCP 4.5 which decline towards other trajectories for L. nepalense. Overall, both the focal species shift towards the north-west, losing their potential habitat in hilly and lower mountainous regions by 2050 across all trajectories. Our results highlight the impact of future climate change on two threatened and valuable species. The results can be further useful to initiate farming of these medicinally and economically important species based on climatically suitable zone and for designing a germplasm conservation strategy.

关键词： Commercial exploitation Conservation Lily Fritillaria cirrhosa Lilium nepalense MaxEntmodelling Species distribution

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Quantifying Effects of Photoperiod, Temperature and humidity on Flowering Initiation in Basmati Rice Lines

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American Journal of Plant Sciences 2019年第6期10卷 893-903页

作者： Tahir Latif Zulqarnain Haider Muhammad Ramzan Muhammad Akhter Sadia Gull Abid Mahmood Awais Riaz rana Ahsen Raza Khan Rice Research Institute Lahore Pakistan Pakistan Agriculture Research Council Kala Shah Kaku Pakistan Yangzhou University Yangzhou China Ayub Agricultural Research Institute Faisalabad Pakistan

The results suggested that all the pure Basmati lines or genotypes initiate flowering within a specific range of day length duration and temperature. Delaying the transplanting date did not significantly affect the flowering time of studied Basmati lines. Maximum threshold of daily minimum temperature (MT) was 24°C during both the years. Likewise, maximum threshold of daily day-length (DL) durations was 12 hours and 18 minutes during both the study years. Results showed that the flowering was maximum when the MT and DL values were optimum as depicted by peak of the trend lines, where maximum lines flowered. Maximum flowering initiations took place when DL was about 11 hours and 15 minutes indicating Basmati as short day plant which flowers maximum when day lengths are shorter and dark or night duration is longer. During 2013, 1st date trial showed strong relationship between flowering initiation with dates of flowering during the flowering period as depicted by higher regression (R2 = 0.837) values. In 2nd date trial during the same year, the value is lower (R2 = 0.513) depicting less relationship of flowering initiation with the dates of flowering. The same trend was observed in 2014 trial. In 1st date trial, strong relationship between flowering initiation with dates of flowering during the flowering period as depicted by higher regression (R2 = 0.864) values, was observed. In 2nd date trial during the same year, the value is lower (R2 = 0.1789) depicting very poor relationship of flowering initiation with the dates of flowering, and the same trend (R2 = 0.0544) in 3rd date of trial.

关键词： Basmati Rice Flowering Photoperiod Temperature humidity

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