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Functional predictability of universal gene circuits in diverse microbial hosts

Quantitative Biology 2024年第2期12卷 129-140页

作者： Chenrui Qin Tong Xu Xuejin Zhao Yeqing Zong haoqian m.zhang Chunbo Lou Qi Ouyang Long Qian Peking-Tsinghua Joint Center for Life Sciences Peking UniversityBeijingChina CAS Key Laboratory of microbial Physiological and metabolic Engineering Institute of MicrobiologyChinese Academy of SciencesBeijingChina Bluepha Co. LtdBeijingChina Center for Cell and Gene Circuit Design CAS Key Laboratory of Quantitative Engineering BiologyGuangdong Provincial Key Laboratory of Synthetic GenomicsShenzhen Key Laboratory of Synthetic GenomicsShenzhen Institute of Synthetic BiologyShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina Center for Quantitative Biology Academy for Advanced Interdisciplinary StudiesPeking UniversityBeijingChina

Although the principles of synthetic biology were initially established in model bacteria,microbial producers,extremophiles and gut microbes have now emerged as valuable prokaryotic chassis for biological *** the host range in which designed circuits can function reliably and predictably presents a major challenge for the concept of synthetic biology to *** this work,we systematically characterized the cross-species universality of two transcriptional regulatory modules—the T7 RNA polymerase activator module and the repressors module—in three non-model *** found striking linear relationships in circuit activities among different organisms for both *** model fitting revealed host non-specific parameters defining the universality of both ***,a genetic NOT gate and a band-pass filter circuit were constructed from these modules and tested in non-model *** models employing host non-specific parameters were successful in quantitatively predicting circuit behaviors,underscoring the potential of universal biological parts and predictive modeling in synthetic bioengineering.

关键词： circuit predictability host-independent genetic circuits host-nonspecific parameters parts characterization transcriptional regulatory modules

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Effect of drying temperature ranges on the efficacy of probiotics

Effect of drying temperature ranges on the efficacy of probi...

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第五届益生菌益生元科学大会

作者： Bei Song ming Yu Xiao Dong Chen Romain Jeantet Didier DuPont haoqian m.zhang Teng Li Song Huang Bluepha Co. Ltd School of Chemical and Environmental Engineering Soochow University Department of Chemical and Biological Engineering Xiamen University

Drying process is indispensable for probiotic *** diverse drying processes,freeze drying(FD) is up to date the most widely used in probiotic manufacturing due to the absence of high temperature during the ***,hours of extremely low-temperature treatment are inevitable in FD,which could significantly weaken the recovery activity of probiotic bacteria,thus to limit their efficacy when passing through the digestive *** different drying processes were built to explore viable temperature ranges that could guarantee both intensive drying and efficacy of probiotic ***,the efficacy of probiotics was evaluated by comparing not only viable bacterial count,but also probiotic function-related criteria,including colonization ability,competitive capacity,and beneficial metabolite *** showed that drying temperature had a significant effect on the efficacy of *** particular,although FD yielded a high viable count,it could not guarantee probiotic *** results also indicated that,in addition to viable count,more evaluation criteria are needed to assess the viability of drying process and even other industrial processes for probiotic manufacturing.

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On self-affine tiles that are homeomorphic to a ball

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Science China mathematics 2024年第1期67卷 45-76页

作者： Jorg m.Thuswaldner Shu-Qin zhang mathematics and Statistics University of LeobenLeoben 8700Austria School of mathematics and Statistics Zhengzhou UniversityZhengzhou 450001China

Let m be a 3×3 integer matrix which is expanding in the sense that each of its eigenvalues is greater than 1 in modulus and let D?Z^(3)be a digit set containing|det m|*** the unique nonempty compact set T=T(m,D)defined by the set equation mT=T+D is called an integral self-affine tile if its interior is *** D is of the form D={0,v,...,(|det m|-1)v},we say that T has a collinear digit *** present paper is devoted to the topology of integral self-affine tiles with collinear digit *** particular,we prove that a large class of these tiles is homeomorphic to a closed 3-dimensional ***,we show that in this case,T carries a natural CW complex structure that is defined in terms of the intersections of T with its neighbors in the lattice tiling{T+z:z∈Z^(3)}induced by *** CW complex structure is isomorphic to the CW complex defined by the truncated octahedron.

关键词： self-afine sets tiles and tilings low-dimensional topology truncated octahedron

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Sparse-Grid Implementation of Fixed-Point Fast Sweeping WENO Schemes for Eikonal Equations

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Communications on Applied mathematics and Computation 2024年第1期6卷 3-29页

作者： Zachary m.miksis Yong-Tao zhang Department of Applied and Computational mathematics and Statistics University of Notre DameNotre DameIN46556USA

Fixed-point fast sweeping methods are a class of explicit iterative methods developed in the literature to efficiently solve steady-state solutions of hyperbolic partial differential equations(PDEs).As other types of fast sweeping schemes,fixed-point fast sweeping methods use the Gauss-Seidel iterations and alternating sweeping strategy to cover characteristics of hyperbolic PDEs in a certain direction simultaneously in each sweeping *** resulting iterative schemes have a fast convergence rate to steady-state ***,an advantage of fixed-point fast sweeping methods over other types of fast sweeping methods is that they are explicit and do not involve the inverse operation of any nonlinear local ***,they are robust and flexible,and have been combined with high-order accurate weighted essentially non-oscillatory(WENO)schemes to solve various hyperbolic PDEs in the *** multidimensional nonlinear problems,high-order fixed-point fast sweeping WENO methods still require quite a large amount of computational *** this technical note,we apply sparse-grid techniques,an effective approximation tool for multidimensional problems,to fixed-point fast sweeping WENO methods for reducing their computational ***,we focus on fixed-point fast sweeping WENO schemes with third-order accuracy(zhang et al.2006[41]),for solving Eikonal equations,an important class of static Hamilton-Jacobi(H-J)*** experiments on solving multidimensional Eikonal equations and a more general static H-J equation are performed to show that the sparse-grid computations of the fixed-point fast sweeping WENO schemes achieve large savings of CPU times on refined meshes,and at the same time maintain comparable accuracy and resolution with those on corresponding regular single grids.

关键词： Fixed-point fast sweeping methods Weighted essentially non-oscillatory(WENO)schemes Sparse grids Static Hamilton-Jacobi(H-J)equations Eikonal equations

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家校合作实施教育惩戒的逻辑机理、实然困境与实践策略

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湖南师范大学教育科学学报 2024年第5期23卷 15-21页

作者：张学敏江瑞涛张浩乾西南大学西南民族教育与心理研究中心西南大学教育学部

家校合作实施教育惩戒对学生的全面发展具有重要意义。家校合作实施教育惩戒的逻辑机理有家校认知和目标的契合、家长受教育水平的提升、趋于平等的家校关系等。但在现实中，家校立场分歧、信息不对称、利益博弈、权责边界模糊等因素都... 详细信息

家校合作实施教育惩戒对学生的全面发展具有重要意义。家校合作实施教育惩戒的逻辑机理有家校认知和目标的契合、家长受教育水平的提升、趋于平等的家校关系等。但在现实中，家校立场分歧、信息不对称、利益博弈、权责边界模糊等因素都阻碍家校合作实施教育惩戒。政府、学校、家庭等主体应共同采取措施促进家校双方协同合作，有效实施教育惩戒。

关键词：教育惩戒家校合作逻辑机理实然困境实践策略

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乳酸盐与渗透胁迫对干酪乳酪杆菌zhang的损伤机理及保护措施

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中国食品学报 2024年第4期24卷 108-117页

作者：杨雄州王昊乾张静雯黄天于洁张和平内蒙古农业大学、乳品生物技术与工程教育部重点实验室、农业农村部奶制品加工重点实验室、内蒙古自治区乳品生物技术与工程重点实验室、乳酸菌与发酵乳制品省部共建协同创新中心呼和浩特010018

目的:探究乳酸盐与渗透压胁迫对干酪乳酪杆菌zhang的抑制作用并寻求解决方案。方法:分别使用乳酸钠、乳酸铵与氯化钠对菌体营造有机盐胁迫与渗透压胁迫,测定完全抑制浓度并绘制耐渗透曲线,通过测定菌体密度、活菌数、细胞损伤来观察LCZ... 详细信息

目的:探究乳酸盐与渗透压胁迫对干酪乳酪杆菌zhang的抑制作用并寻求解决方案。方法:分别使用乳酸钠、乳酸铵与氯化钠对菌体营造有机盐胁迫与渗透压胁迫,测定完全抑制浓度并绘制耐渗透曲线,通过测定菌体密度、活菌数、细胞损伤来观察LCZ受到的生理损伤与相容性溶质的保护效果。通过分批培养与恒定pH分批培养探究渗透压升高的关键因素,通过稀释发酵液以达到降低渗透压的效果,测定稀释后样品菌体密度、活菌数、干重得率的变化。结果:乳酸铵由于自身特性对LCZ具有强烈抑制作用;乳酸钠对LCZ的抑制作用较为温和,对LCZ起到的主要抑制作用是高渗抑制。L-脯氨酸对高渗环境下LCZ生物量积累及细胞活性均有显著保护作用,最优添加量为2 g/L。稀释发酵液处理对恒定pH补料培养菌体密度与活菌数的提升效果显著,最终发酵液OD_(600nm)与活菌数可达到19.68±0.429与(3.439±0.110)×10^(10)CFU/mL,分别是未稀释处理的1.61倍与1.46倍。结论:L-脯氨酸能够在一定程度上缓解高渗下LCZ的活性损伤。通过稀释发酵液处理降低发酵后期渗透压,能极大地提升发酵水平及细胞活性,研究结果为工业化生产及应用提供参考。

关键词：干酪乳酪杆菌zhang 乳酸盐胁迫渗透胁迫相容性溶质高密度发酵

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N-doped graphene quantum dot-decorated N-TiO2/P-doped porous hollow g-C_(3)N_(4) nanotube composite photocatalysts for antibiotic photodegradation and H2 production

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International Journal of minerals,metallurgy and materials 2024年第1期31卷 165-178页

作者： Jingshu Yuan Yao zhang Xiaoyan zhang Junjie zhang Shen’gen zhang Institute for Advanced materials and Technology University of Science and Technology BeijingBeijing 100083China Xi’an Fanyi University Xi’an 710105China Shunde Graduate School of University of Science and Technology Beijing Foshan 528399China State Key Laboratory of Lunar and Planetary Sciences Macao University of Science and TechnologyMacao SAR 820000China

Exclusive responsiveness to ultraviolet light (~3.2 eV) and high photogenerated charge recombination rate are the two primary drawbacks of pure TiO_(2). We combined N-doped graphene quantum dots (N-GQDs), morphology regulation, and heterojunction construction strategies to synthesize N-GQD/N-doped TiO_(2)/P-doped porous hollow g-C_(3)N_(4) nanotube (PCN) composite photocatalysts (denoted as G-TPCN). The optimal sample (G-TPCN doped with 0.1wt% N-GQD, denoted as 0.1% G-TPCN) exhibits significantly enhanced photoabsorption, which is attributed to the change in bandgap caused by elemental doping (P and N), the improved light-harvesting resulting from the tube structure, and the upconversion effect of N-GQDs. In addition, the internal charge separation and transfer capability of0.1% G-TPCN are dramatically boosted, and its carrier concentration is 3.7, 2.3, and 1.9 times that of N-TiO_(2), PCN, and N-TiO_(2)/PCN(TPCN-1), respectively. This phenomenon is attributed to the formation of Z-scheme heterojunction between N-TiO_(2) and PCNs, the excellent electron conduction ability of N-GQDs, and the short transfer distance caused by the porous nanotube structure. Compared with those of N-TiO_(2), PCNs, and TPCN-1, the H2 production activity of 0.1%G-TPCN under visible light is enhanced by 12.4, 2.3, and 1.4times, respectively, and its ciprofloxacin (CIP) degradation rate is increased by 7.9, 5.7, and 2.9 times, respectively. The optimized performance benefits from excellent photoresponsiveness and improved carrier separation and migration efficiencies. Finally, the photocatalytic mechanism of 0.1% G-TPCN and five possible degradation pathways of CIP are proposed. This study clarifies the mechanism of multiple modification strategies to synergistically improve the photocatalytic performance of 0.1% G-TPCN and provides a potential strategy for rationally designing novel photocatalysts for environmental remediation and solar energy conversion.

关键词： N-doped TiO_(2) N-doped graphene quantum dots P-doped g-C_(3)N_(4) porous hollow nanotube heterojunction photocatalysis

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An Integral method for Solving Dynamic Equations with Fluid–Solid Coupling

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Acta mechanica Solida Sinica 2024年第1期37卷 99-108页

作者： Xin zhang Jie Liu Pu Xue Shuowen Yan Yahao Xu m.S.Zahran School of Aeronautics Northwestern Polytechnical UniversityXi'an 710072China School of mechatronical Engineering Beijing Institute of TechnologyBeijing 100081China Department of Civil Engineering Military Technical CollegeCairo 11435Egypt

In this work,a new methodology is presented to mainly solve the fluid–solid interaction(FSI)*** methodology combines the advantages of the Newmark precise integral method(NPIm)and the dual neural network(DNN)*** NPIm is employed to modify the exponential matrix and loading vector based on the DNN integral *** involves incorporating the basic assumption of the Newmark-βmethod into the dynamic equation and eliminating the acceleration term from the dynamic equilibrium *** a result,the equation is reduced to a first-order linear equation ***,the PIm is applied to integrate the system step by step within the *** DNN method is adopted to solve the inhomogeneous term through fitting the integrand and the original function with a pair of neural networks,and the integral term is solved using the Newton–Leibniz *** examples demonstrate that the proposed methodology significantly improves computing efficiency and provides sufficient precision compared to the DNN *** is particularly evident when analyzing large-scale structures under blast loading conditions.

关键词： Newmark precise integral method(NPIm) Dual neural networks(DNN) Fluid-solid interaction(FSI) Dynamic time-history analysis Blast loading

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Unveiling the protective role of biofilm formation on the photoaging of microplastics

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Science China Technological Sciences 2024年第10期67卷 3067-3078页

作者： zhang HaiYu LIU Peng zhang JiaYu DAI Jiamin zhang XinRui zhang ZiXuan JIA HanZhong Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China Ministry of AgricultureCollege of Natural Resources and EnvironmentNorthwest A&F University Key Laboratory of Organic Compound Pollution Control Engineering School of Environmental and Chemical EngineeringShanghai University

In natural water, microplastics（mPs） inevitably undergo microbial colonization to form biofilm, while the effect of biofilm formation on the photoaging of mPs remains unknown. This study systematically investigated the photoaging behavior of disposable box-derived polypropylene（PPmPs） and polystyrene（PSmPs） mediated by formed biofilm in water. After incubating in Weihe water samples for 105 d, the biofilm was validated to form in PPmPs and PSmPs, with higher formation in PSmPs. In particular, biofilm formation inhibited the photoaging of PPmPs and PSmPs, with an 11.1% and 50.6% decrease in photooxidation compared to their virgin counterparts after 20 d of ultraviolet（UV） irradiation. moreover, the photoaging route of mPs such as the reaction priority of functional groups（e.g., C–H, C=O, and benzene ring） was altered, indicating the important role of biofilm formation in the photoaging process of mPs. The protective effect of the biofilm was mainly caused by the role of optical light filters that absorbed UV energy by sacrificing themselves. Also, as the main attacker on mPs, the production of reactive oxygen species（ROS, mainly1O2and ·OH） was inhibited by biofilm, which was mainly responsible for the decreased photoaging of mPs. This study revealed the important role of biofilm in the photoaging process of mPs and suggested a higher resistance of（micro）plastics in natural water than that in the laboratory using pure mPs, which contributed to a deeper understanding of the environmental fate and pollution of mPs.

关键词： microplastics biofilm photoaging physical shielding reactive oxygen species

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Periodic Variation Studies of the Two Short Period W Uma-type Eclipsing Binaries: LX Lyn and V0853 Aur

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Research in Astronomy and Astrophysics 2024年第1期24卷 273-284页

作者： Xu zhang Bin zhang School of Physics and Electronic Science Guizhou Normal UniversityGuiyang 550001China Guizhou Provincial Key Laboratory of Radio Astronomy and Data Processing Guizhou Normal UniversityGuiyang 550025China

In this paper,new light curves(LCs) of contact eclipsing binary(CEB) systems LX Lyn and V0853 Aur are presented and analyzed by using the 2015 version of the Wilson-Devinney(W-D) *** order to explain their asymmetric LCs,cool starspots on the components were *** is suggested that their fill-out degrees are f=12.0%(LX Lyn) and f=26.3%(V0853 Aur).At the same time,we found that LX Lyn is a W-type eclipsing binary(EB) with an orbital inclination of i=84°.88 and a mass ratio of q=2.31.V0853 Aur is also a W-type CEB with a mass ratio of q=2.77 and an orbital inclination of i= 79°.*** on all available times of light minimum,their orbital period changes are studied by using the O-C *** O-C diagram of LX Lyn reveals a cyclic oscillation with a period of about 14.84 yr and an amplitude of 0.0019 days,which can be explained by the light-travel time effect(LTTE) due to the presence of a third body with a minimum mass of0.06m_⊙.For V0853 Aur,it is discovered that the O-C diagram of the system also shows a cyclic oscillation with a period of 9.64 yr and an amplitude of 0.03365 *** cyclic oscillation of V0853 Aur can be attributed to the LTTE by means of a third body with a mass no less than 3.77m_⊙.The third body may play an important role in the formation and evolution of these systems.

关键词： stars:activity (stars:)binaries(including multiple):close (stars:)binaries:eclipsing (stars:)brown dwarfs stars:evolution stars:formation

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