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Prediction of clinically actionable genetic alterations from colorectal cancer histopathology images using deep learning

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World Journal of Gastroenterology 2020年第40期26卷 6207-6223页

作者： Hyun-Jong Jang Ahwon Lee J Kang In Hye Song Sung hak Lee Department of Physiology Department of Biomedicine and Health SciencesCatholic Neuroscience InstituteThe Catholic University of KoreaSeoul 06591South Korea Department of Hospital Pathology Seoul St.Mary’s HospitalCollege of MedicineThe Catholic University of KoreaSeoul 06591South Korea

BACKGROUND Identifying genetic mutations in cancer patients have been increasingly important because distinctive mutational patterns can be very informative to determine the optimal therapeutic strategy. Recent studies have shown that deep learning-based molecular cancer subtyping can be performed directly from the standard hematoxylin and eosin(H&E) sections in diverse tumors including colorectal cancers(CRCs). Since H&E-stained tissue slides are ubiquitously available, mutation prediction with the pathology images from cancers can be a time-and cost-effective complementary method for personalized *** To predict the frequently occurring actionable mutations from the H&E-stained CRC whole-slide images(WSIs) with deep learning-based *** A total of 629 CRC patients from The Cancer Genome Atlas(TCGA-COAD and TCGA-READ) and 142 CRC patients from Seoul St. Mary Hospital(SMH) were included. Based on the mutation frequency in TCGA and SMH datasets, we chose APC, KRAS, PIK3CA, SMAD4, and TP53 genes for the study. The classifiers were trained with 360 × 360 pixel patches of tissue images. The receiver operating characteristic(ROC) curves and area under the curves(AUCs) for all the classifiers were *** The AUCs for ROC curves ranged from 0.693 to 0.809 for the TCGA frozen WSIs and from 0.645 to 0.783 for the TCGA formalin-fixed paraffin-embedded *** prediction performance can be enhanced with the expansion of datasets. When the classifiers were trained with both TCGA and SMH data, the prediction performance was *** APC, KRAS, PIK3CA, SMAD4, and TP53 mutations can be predicted from H&E pathology images using deep learning-based classifiers, demonstrating the potential for deep learning-based mutation prediction in the CRC tissue slides.

关键词： Colorectal cancer Mutation Deep learning Computational pathology Computer-aided diagnosis Digital pathology

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Triolein emulsion infusion into the hepatic artery increases vascular permeability to doxorubicin in rabbit liver

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World Journal of Gastroenterology 2021年第2期27卷 152-161页

作者： Yong-Woo Kim hak Jin Kim Byung Mann Cho Seon Hee Choi Department of Radiology Research Institute for Convergence of Biomedical Science and TechnologyPusan National University Yangsan HospitalPusan National University College of MedicineYangsan 50612South Korea Department of Radiology Biomedical Research InstitutePusan National University HospitalPusan National University College of MedicineBusan 49241South Korea Preventive Medicine and Occupational Medicine Pusan National University School of MedicineYangsan 50612South Korea Department of Radiology Pusan National UniversityBusan 49241South Korea

BACKGROUND The infusion of triolein emulsion(TE)induced increased vascular permeability and a negligible and temporary decrease in liver function without specific histopathological *** To assess changes in doxorubicin concentration according to the percentage of TE infused via a hepatic artery to study the vascular permeability in the rabbit *** Thirty-nine healthy rabbits were divided into five groups according to the concentration of emulsified triolein infused into the hepatic arteries:Group 0,saline infusion(control group,n=5);group 1,0.3%TE(n=13);group 2,0.6%TE(n=6);group 3,0.9%TE(n=8);and group 4,1.5%TE(n=6).Doxorubicin(2.4 mg/kg)was infused immediately after TE injection via the hepatic *** 2 h,the livers were harvested,and doxorubicin concentrations were calculated *** doxorubicin concentrations were compared between TE groups and the control group,and the optimal concentrations within the TE groups were *** analysis was performed using the nonparametric Mann-Whitney U test and Kruskal-Wallis test.P0.05).CONCLUSION TE infusion into the hepatic arteries significantly increased the doxorubicin concentration approximately twofold but was not different between the TE *** findings suggest that TE infusion might be a useful adjuvant treatment of liver cancers.

关键词： Triolein emulsion Liver tumor Chemotherapy Drug delivery Vascular permeability Dexorubicin

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Development of Cd-doped Co Nanoparticles Encapsulated in Graphite Shell as Novel Electrode Material for the Capacitive Deionization Technology

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Nano-Micro Letters 2013年第4期5卷 303-313页

作者： Nasser A.M.Barakat Khalil Abdelrazek Khalil Ahmad G.El-Deen hak yong kim Organic Materials and Fiber Engineering Department Chonbuk National University Chemical Engineering Department Minia University Mechanical Engineering Department (NPST) King Saud University Dept of Bionano System Engineering College of Engineering Chonbuk National University

Because of the low energy requirement and the environmentally safe byproducts, the capacitive deionization water desalination technology has attracted the attention of many researchers. The important requirements for electrode materials are good electrical conductivity, high surface area, good chemical stability and high specific capacitance. In this study, metallic nanoparticles that are encapsulated in a graphite shell(Cd doped Co/C NPs) are introduced as the new electrode material for the capacitive deionization process because they have higher specific capacitance than the pristine carbonaceous materials. Cd doped Co/C NPs perform better than graphene and the activated carbon. The introduced nanoparticles were synthesized using a simple sol gel technique. A typical sol gel composed of cadmium acetate, cobalt acetate and poly(vinyl alcohol)was prepared based on the polycondensation property of the acetates. The physiochemical characterizations that were used confirmed that the drying, grinding and calcination in an Ar atmosphere of the prepared gel produced the Cd doped Co nanoparticles, which were encapsulated in a thin graphite layer. Overall, the present study suggests a new method to effectively use the encapsulated bimetallic nanostructures in the capacitive deionization technology.

关键词： Capacitive deionization Water desalination Bimetallic nanoparticles Specific capacitance

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Development of a low-cost GPS/INS integrated system for tractor automatic navigation

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International Journal of Agricultural and Biological Engineering 2017年第2期10卷 123-131页

作者： Xiongzhe Han hak-Jin Kim Chan Woo Jeon Hee Chang Moon Jung Hun Kim Dept.of Biosystems and Biomaterials Engineering College of Agriculture and Life SciencesSeoul National University.Seoul 08826Republic of Korea Unmanned Solutions Co. Seoul 06643Republic of Korea R&D Institute Tong Yang Moolsan Co.LTDChungcheongnam-do 32530Republic of Korea

The use of low-cost single GPS receivers and inertial sensors for auto-guidance applications has been limited by their reduced accuracy and signal drift over time compared to real-time kinematic(RTK)differential GPS units and fiber-optic gyroscope(FOG)*** this study,a prototype low-cost GPS/INS integrated system consisting of a triangle-shaped array of three Garmin 19x GPS receivers and an Xsens inertial measurement unit(IMU)to improve the accuracy of position and heading angle measured with a single GPS receiver was developed.A triangular algorithm that uses data collected from the three single GPSs mounted on the angular points of a triangular frame was designed.A sensor fusion algorithm based on the Kalman filter combining the GPS and IMU data was developed by integrating position data and heading angles of a triangular array of GPS *** optimized values of two noise covariance matrixes(Q and R)for the Kalman filtering were determined using the Central Composite Design(CCD)*** compared to the use of a single Garmin GPS receiver,use of the developed GPS/INS system showed improved accuracy performance in terms of both position and heading angle,with reductions in root mean square errors(RMSEs)from 2.7 m to 0.64 m for position and from 8.9ºto 2.1ºfor heading *** accuracy improvements show new potential for agricultural auto-guidance applications.

关键词： global positioning system tractor automatic navigation sensor fusion Kalman filter inertial sensor heading angle

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Synthesis and Electrical Properties of TiO_2 Nanoparticles Embedded in Polyamide-6 Nanofibers Via Electrospinning

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Nano-Micro Letters 2011年第1期3卷 56-61页

作者： R.Nirmala Jin Won Jeong R.Navamathavan hak Yong Kim Bio-nano System Engineering Chonbuk National University Department of Organic Materials and Fiber Engineering Chonbuk National University Center for Healthcare Technology & Development Chonbuk National University School of Advanced Materials Engineering Chonbuk National University

We report on the synthesis and characterizations of TiO2 nanoparticles embedded in polyamide-6composite nanofibers by using electrospinning technique. The influence of substrate on the electrical characteristics of polyamide-6/TiO2 composite nanofibers was investigated. The resultant nanofibers exhibit good incorporation of TiO2 nanoparticles. The doping of TiO2 nanoparticles into the polyamide-6 nanofibers were confirmed by high resolution transmission electron microscopy and energy dispersive X-ray spectroscopy. Photoluminescence（PL） and cathodoluminescence（CL） spectroscopy were also used to characterize the *** PL and CL spectra reveal that the as-spun polyamide-6/TiO2 composite nanofibers consisted of overlapping of two broad emission bands due to the contribution of polyamide-6（centered at about 475 nm）, which might originate from organic functional groups of polyamide-6 and TiO2 nanoparticles（centered around 550 nm）. The electrical conductivity of the polyamide-6/TiO2 composite nanofibers on different substrates was carried *** was found that the electrical conductivity of the polyamide-6/TiO2 composite nanofibers on silicon substrate was in the range of 13 μA, and about 1 to 20 p A for the paper and glass substrates.

关键词： Electrospinning Polyamide-6 Nanoparticles Nanofibers Electrical studies

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Web of Cell体系——适应未来智能电网发展的新理念

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电力系统自动化 2017年第15期41卷 1-9页

作者：宋蕙慧于国星曲延滨 hak-Man KIM 哈尔滨工业大学(威海)信息与电气工程学院山东省威海市264209 韩国仁川国立大学工学院

针对未来大量分布式发电并网需求,以智能电网为背景阐释了一种全新的电力系统控制体系——Web of Cell体系。首先,诠释该体系的概念并总结归纳出其特点,通过对比Web of Cell体系与集中控制体系及Cell与微电网和主动配电网间的差异,剖析... 详细信息

针对未来大量分布式发电并网需求,以智能电网为背景阐释了一种全新的电力系统控制体系——Web of Cell体系。首先,诠释该体系的概念并总结归纳出其特点,通过对比Web of Cell体系与集中控制体系及Cell与微电网和主动配电网间的差异,剖析了该体系在未来电力系统中的优势和可行性。随后,对该体系调压调频的控制结构和运行方式进行了分析并指出应重点关注的技术问题。最后,对该体系的进一步发展和研究方向进行了展望,以期为中国电网智能化发展提供参考和借鉴。

关键词：智能电网 Web of Cell体系集中控制体系微电网(微网) 调压调频

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带时延补偿的模糊广域阻尼控制分析与设计

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系统工程与电子技术 2019年第10期41卷 2343-2351页

作者：尹逊和王伟 LAM hak-Keung 北京交通大学电子信息工程学院北京100044 伦敦国王学院信息系伦敦WC2R2LS

研究了存在网络通信时延的电力系统的广域阻尼控制问题。首先从理想传输情况出发,设计基于Mamdani方法的模糊逻辑广域阻尼控制器;然后考虑时延对控制效果的影响,在控制器中引入模糊输入,设计带时延补偿的模糊逻辑广域阻尼控制器。时延... 详细信息

研究了存在网络通信时延的电力系统的广域阻尼控制问题。首先从理想传输情况出发,设计基于Mamdani方法的模糊逻辑广域阻尼控制器;然后考虑时延对控制效果的影响,在控制器中引入模糊输入,设计带时延补偿的模糊逻辑广域阻尼控制器。时延补偿增加了控制器设计的复杂性,因此在保证系统性能无显著降低的条件下,对其模糊规则数进行简化。以4机2区域测试系统为例,利用Matlab/SimPowerSystem和TrueTime进行仿真分析,结果表明,与模糊逻辑广域阻尼控制器和传统的广域阻尼控制器相比,所设计的具有时延补偿的模糊逻辑广域阻尼控制器能有效地抑制时延对系统稳定性造成的影响。

关键词：低频振荡广域测量系统广域阻尼控制器模糊控制时延补偿

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Effects of honing treatment on AIP-TiN and TiAlN coated end-mill for high speed machining

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Transactions of Nonferrous Metals Society of China 2011年第A1期21卷 83-87页

作者： Jae-Young HEO Sung-hak CHO Tae-Jin JE Kwang-Ho KIM Hyung-Woo LEE Myung-Chang KANG National Core Research Center for Hybrid Materials Solution Pusan National University Nano Machining Laboratory Korea Institute of Machinery and Material (KIMM) 171 Jang-dong Yuseong-Gu Daejeon 305-343 Korea

The objective of this work is to compare the tool performance of TiN and TiA1N coated carbides end-mills deposited by an arc ion plating （ALP） method, using honing treatment to polish the cutting edge surface sleekly. The curve of surface roughness versus honing time showed a rapid improvement initially and thereafter became steady, manifesting a saturation effect. The optimal honing time related to surface roughness was determined to be approximately 20 s. As the surface roughness increased, the critical loads reduced. At an average surface roughness （Ra） of 0.028 p.m, the highest critical loads of TiN and TiAlN coating layers were 98 and 114 N, respectively. Tool performances of uncoated and coated tools were conducted under high speed machining （HSM） of AISI D2 cold-worked die steel （62 HRC）. Consequently, the TiAlN coated end-mill using honing treatment showed excellent tool life under HSM conditions.

关键词： TiA1N arc ion plating honing treatment high speed machining tool life

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The optimal timing of post-prostate biopsy magnetic resonance imaging to guide nerve-sparing surgery

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Asian Journal of Andrology 2014年第2期16卷 280-284,I0010页

作者： Young Hwii Ko Phil Hyun Song Ki hak Moon Hee Chang Jung Jun Cheon Deuk Jae Sung Department of Urology Yeuflgnam University School of Medicine Daegu Korea Department of Urology Korea University School of Medicine Seoul Korea Department of Radiology Korea University School of Medicine Seoul Korea

The goal of our study was to evaluate the impact of the interval between prostate biopsy and magnetic resonance imaging （MRI） on the accuracy of simple tumor localization, which is essential information that enables nerve-sparing surgery. We also sought to determine the optimal timing of a post-biopsy MRI, A total of 184 patients who had undergone MRI before radical prostatectomy at an institution without a predetermined schedule for MRI after a prostate biopsy were enrolled. The mean interval from the biopsy to the MRI was 30.8 ± 18.6days. The accuracy of the MRI for simplified tumor location （right, left, bilateral and none） was 44.6%. In the group with discordant pathologic and MRI findings, the most common reason recorded was ＇MRI predicted a unilateral lesion, but pathology revealed bilateral lesions＇（58.3%）, followed by ＇MRI predicted no lesion, but pathology revealed the presence of a lesion＇（32.0%）. Multivariable analysis showed that the discordant group had a shorter interval （25.0 ± 14.3 vs 38.1 ± 20.6days, P 〈 0.01） preceding the MRI and a higher rate of hemorrhage as observed by MRI （80.4% vs 54.8%, P 〈 0.01） in comparison with the accordant group. In receiver operating characteristics analysis, the area under the curve of the MRI interval in accurate prediction of the tumor location was 0.707 （P 〈 0.001）. At the MRI interval＇s cutoff of 28.5days, the sensitivity was 73.2% and the specificity was 63.7%. When the MRI was performed within 28days, the accumulated accuracy was only 26.1% （23/88）; however, when it was performed after 28days, the reversely accumulated accuracy was 61.5% （59/96）. These data support a waiting period of at least 4weeks after a biopsy before performing an MRI for the purposes of surgical refinement.

关键词： magnetic resonance imaging nerve preservation prostate biopsy radical prostatectomy

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Weekend and nighttime effect on the prognosis of peptic ulcer bleeding

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World Journal of Gastroenterology 2012年第27期18卷 3578-3584页

作者： Young Hoon Youn Yong Jin Park Jae hak Kim Tae Joo Jeon Jae Hee Cho Hyojin Park Department of Internal Medicine Gangnam Severance HospitalYonsei University College of MedicineSeoul 135-720South Korea Department of Internal Medicine Dongguk University Ilsan HospitalDongguk University College of MedicineGyeonggi-do 410-773South Korea Department of Internal Medicine Inje University Sanggye Paik HospitalInje University College of MedicineSeoul 139-707South Korea Department of Internal Medicine Kwandong University Myungji HospitalKwandong University College of MedicineGyeonggi-do 412-270South Korea

AIM:To evaluate whether weekend or nighttime admission affects prognosis of peptic ulcer bleeding despite early ***:Retrospective data collection from four referral centers,all of which had a formal out-of-hours emergency endoscopy service,even at weekends.A total of 388 patients with bleeding peptic ulcers who were admitted via the emergency room between January 2007 and December 2009 were *** parameters included time from patients' arrival until endoscopy,mortality,rebleeding,need for surgery and length of hospital ***:The weekday and weekend admission groups comprised 326 and 62 patients,*** were no significant differences in baseline characteristics between the two groups,except for younger age in the weekend *** patients (97%) had undergone early endoscopy,which resulted in a low mortality rate regardless of point of presentation (1.8% overall vs 1.6% on the weekend).The only outcome that was worse in the weekend group was a higher rate of rebleeding (12% vs 21%,P = 0.030).However,multivariate analysis revealed nighttime admission and a high Rockall score (≥ 6) as significant independent risk factors for rebleeding,rather than weekend ***:Early endoscopy for peptic ulcer bleeding can prevent the weekend effect,and nighttime admission was identified as a novel risk factor for rebleeding,namely the nighttime effect.

关键词： Early endoscopy Nighttime effect Pepticulcer bleeding Rebleeding Weekend effect

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