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Synthetic and Systems Biotechnology 2024年第2期9卷 187-195页

作者： Zetian Qiu Xiaohui Liu jie Yu Yushuo zhao guang-Rong zhao Shengying Li Kun Liu Lei Du Li Ma State Key Laboratory of Microbial Technology Shandong UniversityQingdaoShandong266237China Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering(Ministry of Education) School of Chemical Engineering and TechnologyTianjin UniversityYaguan Road 135Jinnan DistrictTianjin300350China School of Health Management Hengxing UniversityQingdaoShandong266100China

Benzyl and phenylpropanoid acids are widely used in organic synthesis of fine chemicals,such as pharmaceuticals and ***,biocatalysis of these acids has received less attention than chemical *** of the main challenges for biological production is the limited availability of alcohol dehydrogenases and aldehyde *** microorganisms are potential sources of these *** this study,129 alcohol dehydrogenases and 42 aldehyde dehydrogenases from Corynebacterium glutamicum,Pseudomonas aeruginosa,and Bacillus subtilis were identified and explored with various benzyl and phenylpropanoid alcohol and aldehyde substrates,among which four alcohol dehydrogenases and four aldehyde dehydrogenases with broad substrate specificity and high catalytic activity were ***,a cascade whole-cell catalytic system including ADH-90,ALDH-40,and the NAD(P)H oxidase LreNox was established,which showed high efficiency in converting cinnamyl alcohol and p-methylbenzyl alcohol into the respective carboxylic ***,this biocatalytic system can be easily scaled up to gram-level production,facilitating preparation purposes.

关键词： Benzyl acids Phenylpropanoid acids Alcohol dehydrogenases Aldehyde dehydrogenases Whole-cell catalysis

Incorporation of source contributions to improve the accuracy of soil heavy metal mapping using small sample sizes at a county scale

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Pedosphere 2024年第1期34卷 170-180页

作者： jie SONG Xin WANG Dongsheng YU Jiangang LI Yanhe zhao Siwei WANG Lixia MA State Key Laboratory of Soil and Sustainable Agriculture Institute of Soil ScienceChinese Academy of SciencesNanjing 210008China Chinese Academy of Sciences University Beijing 100049China Agricultural and Rural Bureau of Luanping County Luanping 068250China

Estimating heavy metal(HM) distribution with high precision is the key to effectively preventing Chinese medicinal plants from being polluted by the native soil. A total of 44 surface soil samples were gathered to detect the concentrations of eight HMs(As, Hg, Cu, Cr, Ni, Zn, Pb, and Cd) in the herb growing area of Luanping County, northeastern Hebei Province, China. An absolute principal component score-multiple linear regression(APCS-MLR) model was used to quantify pollution source contributions to soil HMs. Furthermore, the source contribution rates and environmental data of each sampling point were simultaneously incorporated into a stepwise linear regression model to identify the crucial indicators for predicting soil HM spatial distributions. Results showed that 88% of Cu, 72% of Cr, and 72% of Ni came from natural sources;50% of Zn, 49% of Pb, and 59% of Cd were mainly caused by agricultural activities;and 44% of As and 56% of Hg originated from industrial activities. When three-type(natural, agricultural, and industrial) source contribution rates and environmental data were simultaneously incorporated into the stepwise linear regression model, the fitting accuracy was significantly improved and the model could explain 31%–86% of the total variance in soil HM concentrations. This study introduced three-type source contributions of each sampling point based on APCS-MLR analysis as new covariates to improve soil HM estimation precision, thus providing a new approach for predicting the spatial distribution of HMs using small sample sizes at the county scale.

关键词： absolute principal component score-multiple linear regression Chinese herbal medicine influencing factors spatial distribution stepwise multiple regression

Mapping soil organic matter in cultivated land based on multi-year composite images on monthly time scales

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Journal of Integrative Agriculture 2024年第4期23卷 1393-1408页

作者： jie Song Dongsheng Yu Siwei Wang Yanhe zhao Xin Wang Lixia Ma Jiangang Li State Key Laboratory of Soil and Sustainable Agriculture Institute of Soil ScienceChinese Academy of SciencesNanjing 210008China Agricultural and Rural Bureau of Luanping County Luanping 068250China Chinese Academy of Sciences University Beijing 100049China

Rapid and accurate acquisition of soil organic matter(SOM)information in cultivated land is important for sustainable agricultural development and carbon balance *** study proposed a novel approach to predict SOM with high accuracy using multiyear synthetic remote sensing variables on a monthly *** obtained 12 monthly synthetic Sentinel-2 images covering the study area from 2016 to 2021 through the Google Earth Engine(GEE)platform,and reflectance bands and vegetation indices were extracted from these composite *** the random forest(RF),support vector machine(SVM)and gradient boosting regression tree(GBRT)models were tested to investigate the difference in SOM prediction accuracy under different combinations of monthly synthetic *** showed that firstly,all monthly synthetic spectral bands of Sentinel-2 showed a significant correlation with SOM(P<0.05)for the months of January,March,April,October,and ***,in terms of single-monthly composite variables,the prediction accuracy was relatively poor,with the highest R^(2)value of 0.36 being observed in *** monthly synthetic environmental variables were grouped in accordance with the four quarters of the year,the first quarter and the fourth quarter showed good performance,and any combination of three quarters was similar in estimation *** overall best performance was observed when all monthly synthetic variables were incorporated into the ***,among the three models compared,the RF model was consistently more accurate than the SVM and GBRT models,achieving an R^(2)value of *** for band 12 in December,the importance of the remaining bands did not exhibit significant *** research offers a new attempt to map SOM with high accuracy and fine spatial resolution based on monthly synthetic Sentinel-2 images.

关键词： soil organic matter Sentinel-2 monthly synthetic images machine learning model spatial prediction

MFCC based real-time speech reproduction and recognition using distributed acoustic sensing technology

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Optoelectronics Letters 2024年第4期20卷 222-227页

作者： ZHOU Ran zhao Shuai LUO Mingming MENG Xin MA jie LIU Jianfei School of Electronic Information Engineering Hebei University of TechnologyTianjin 300401China Tianjin Key Laboratory of Electronic Materials and Devices Hebei University of TechnologyTianjin 300401China Hebei Key Laboratory of Advanced Laser Technology and Equipment Hebei University of TechnologyTianjin 300401China

The distributed acoustic sensing technology was used for real-time speech reproduction and recognition,in which the voiceprint can be extracted by the Mel frequency cepstral coefficient(MFCC)method.A classic ancient Chinese poem“You Zi Yin”,also called“A Traveler’s Song”,was analyzed both in time and frequency domains,where its real-time reproduction was achieved with a 116.91 ms time *** smaller scaled MFCC0 at 1/12 of MFCC matrix was taken as a feature vector of each line against the ambient noise,which provides a recognition method via cross-correlation among the 6 original and recovered verse *** averaged cross-correlation coefficient of the matching pairs is calculated to be 0.5806 higher than 0.1883 of the nonmatched pairs,promising an accurate and fast method for real-time speech reproduction and recognition over a passive optical fiber.

关键词： MFCC passive coefficient

Genome-Wide Characterization of the Hyaluronidase Gene Family and Their Potential Roles in Viviparous Black Rockfish(Sebastes schlegeli)

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Journal of Ocean University of China 2024年第2期23卷 487-498页

作者： LIU Zhiying NIU Jingning zhao Xi LIU Huaxiang LI Zibin HE Yan QI jie MOE Key Laboratory of Marine Genetics and Breeding College of Marine Life SciencesOcean University of ChinaQingdao 266003China Key Laboratory of Tropical Aquatic Germplasm of Hainan Province Sanya Oceanographic InstituteOcean University of ChinaSanya 572025China

Black rockfish(Sebastes schlegelii)has evolved viviparous reproduction *** from the oviparous fishes,the spermatozoa of black rockfish are stored on the surface of ovarian follicle for over four months until the egg mature in ovary,while the adaptive evolution of fertilization-related genes remains to be *** the present study,based on the genome and transcriptome information of black rockfish,a total of 10 hyaluronidase genes were identified by phylogenetic and sequence analyses,including hyal1,hyal2,hyal3,hyal4,hyal6 and spam1a,spam1b,spam1c and *** spam1 subfamilies,including spam1a,spam1b,spam1c and spam1d,were significantly expanded compared to other *** adaptive evolution of hyaluronidase was further investigated by selection pressure analysis of branch model and branch site *** results showed that only spam1 subfamily was positively selected with a large number of positive selection sites,and the evolution rate was significantly higher thanthose of other *** positively selected sites,LYS-171 and GLY-164,were located in the neutral hyaluronidase activity domain,which was pivotal for SPAM1 to participate in enzymatic hydrolysis of the extracellular hyaluronic acid matrix and mediate acrosome reaction in ***,spam1 was mainly expressed in spermatocytes,secondary spermatocytes,and spermatids of testis,whereas it was not found in metamorphic sperm and mature sperm based on the spatiotemporal expression *** results indicated that spam1 might originate from the testis and might be an adaptation of viviparous trait in black rockfish.

关键词： adaptation of viviparous black rockfish(Sebastes schlegelii) hyaluronidase selective pressure analysis

Contemporary strategies and approaches for characterizing composition and enhancing biofilm penetration targeting bacterial extracellular polymeric substances

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Journal of Pharmaceutical Analysis 2024年第4期14卷 506-524页

作者： Lan Lu Yuting zhao Mingxing Li Xiaobo Wang jie Zhu Li Liao Jingya Wang Key Laboratory of Medicinal and Edible Plants Resources Development of Sichuan Education Department Sichuan Industrial Institute of AntibioticsSchool of PharmacyChengdu UniversityChengdu610000China Meishan Pharmaceutical Vocational College School of PharmacyMeishanSichuan620200China Laboratory of Molecular Pharmacology Department of PharmacologySchool of PharmacySouthwest Medical UniversityLuzhouSichuan646000China Hepatobiliary Surgery Langzhong People's HospitalLangzhongSichuan646000China

Extracellular polymeric substances(EPS)constitutes crucial elements within bacterial biofilms,facili-tating accelerated antimicrobial resistance and conferring defense against the host's immune *** precise and effective antibiofilm approaches and strategies,tailored to the specific charac-teristics of EPS composition,can offer valuable insights for the creation of novel antimicrobial ***,in turn,holds the potential to mitigate the alarming issue of bacterial drug *** analysis of EPS compositions relies heavily on colorimetric approaches with a significant bias,which is likely due to the selection of a standard compound and the cross-interference of various EPS *** the pivotal role of EPS in biofilm functionality,it is imperative for EPS research to delve deeper into the analysis of intricate compositions,moving beyond the current focus on polymeric *** ne-cessitates a shift from heavy reliance on colorimetric analytic methods to more comprehensive and nuanced analytical *** this study,we have provided a comprehensive summary of existing analytical methods utilized in the characterization of EPS ***,novel strategies aimed at targeting EPS to enhance biofilm penetration were explored,with a specific focus on high-lighting the limitations associated with colorimetric ***,we have outlined the challenges faced in identifying additional components of EPS and propose a prospective research plan to address these *** review has the potential to guide future researchers in the search for novel compounds capable of suppressing EPS,thereby inhibiting biofilm *** insight opens up a new avenue for exploration within this research domain.

关键词： Analytic strategies and approaches Composition characterization Extracellular polymeric substances(EPS) Promoting biofilm penetration

Yr5-virulent races of Puccinia striiformis *** possess relative parasitic fitness higher than current main predominant races and potential risk

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Journal of Integrative Agriculture 2024年第8期23卷 2674-2685页

作者： Gensheng Zhang Mudi Sun Xinyao Ma Wei Liu Zhimin Du Zhensheng Kang jie zhao State Key Laboratory of Crop Resistance and High-Efficiency Production College of Plant ProtectionNorthwest A&F UniversityYangling 712100China

Wheat stripe rust,caused by Puccinia striiformis ***(Pst),is one of the most destructive fungal diseases of wheat,and seriously threatens safe production of the crop *** China,new races historically appeared and rapidly developed to be predominant races and have resulted in ineffectiveness and replacement of wheat resistance cultivars as well as massive reduction in *** the present study,the relative parasitic fitness of the two newlyemerged Yr5-virulent races(TSA-6 and TSA-9)were compared with those of four currently predominant Chinese races(CYR31,CYR32,CYR33,and CYR34)based on evaluation on 10 Chinese wheat *** a result,there were significant differences in the relative parasitic fitness parameters among overall tested races based on multiple comparison(LSD)analysis(PTSA-9(0.95)>TSA-6(0.92)>CYR34(0.29)>CYR31(–1.54)>CYR33(–1.77).The results indicated that two Yr5-virulent races TSA-9 and TSA-6 possessed relative parasitic fitness higher than races CYR34,CYR31,and CYR33,but lower than race CYR32,and have potential risks in developing to be predominant ***,continual monitoring of both Yr5-virulent races,and their variants is *** use of wheat cultivars(lines)with Yr5 resistance gene singly in wheat breeding is essential for being avoided,and is suggested to combine with other effective stripe rust resistance genes.

关键词： wheat stripe rust Puccinia striiformis f.sp.tritici parasitic fitness Yr5 new race

Transcriptome analysis reveals steroid hormones biosynthesis pathway involved in abdominal fat deposition in broilers

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Journal of Integrative Agriculture 2024年第9期23卷 3118-3128页

作者： Yuting Zhu Yongli Wang Yidong Wang Guiping zhao jie Wen Huanxian Cui State Key Laboratory of Animal Nutrition/Key Laboratory of Animal(Poultry)Genetics Breeding and Reproduction Ministry of Agriculture and Rural Affairs/Institute of Animal SciencesChinese Academy of Agricultural SciencesBeijing 100193China

Excessive abdominal fat deposition reduces the feed efficiency and increase the cost of production in ***,it is an important task for poultry breeders to breed broilers with low abdominal *** fat deposition is a highly complex biological process,and its molecular basis remains *** this study,we performed transcriptome analysis to compare gene expression profiles at different stages of abdominal fat deposition to identify the key genes and pathways involved in abdominal fat *** found that abdominal fat weight(AFW)increased gradually from day 35(D35)to 91(D91),and then decreased at day 119(D119).Accordingly,after detecting differentially expressed genes(DEGs)by comparing gene expression profiles at D35 vs.D63 and D35 vs.D91,and identifying gene modules associated with fat deposition by weighted gene co-expression network analysis(WGCNA),we performed intersection analysis of the detected DEGs and WGCNA gene modules and identified 394 and 435 intersecting genes,*** results of the Gene Ontology(GO)functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes(KEGG)pathway enrichment analyses showed that the steroid hormone biosynthesis and insulin signaling pathways were co-enriched in all intersecting genes,steroid hormones have been shown that regulated insulin signaling pathway,indicating the importance of the steroid hormone biosynthesis pathway in the development of broiler abdominal *** then identified 6 hub genes(ACTB,SOX9,RHOBTB2,PDLIM3,NEDD9,and DOCK4)related to abdominal fat *** analysis also revealed that there were direct interactions between 6 hub ***9 has been shown to bind to proteins required for steroid hormone receptor binding,and RHOBTB2 indirectly regulates the steroid hormones biosynthesis through cyclin factor,and ultimately affect fat *** results suggest that the genes RHOBTB2 and SOX9 play an important role in fat deposition in broilers,by regul

关键词： broilers abdominal fat deposition transcriptome analysis hub genes steroid hormones biosynthesis pathway

All-optical driven soft crawler with complexmotion capabilities

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International Journal of Smart and Nano Materials 2024年第2期15卷 348-364页

作者： Chenchu Zhang Jin Wang Linhan zhao Renfei Chen Qiangqiang zhao jie zhao Fating Liu Yucheng Bian Heng Zhang Yisen Wang Chaowei Wang Ying Hu Anhui Province Key Lab of Aerospace Structural Parts Forming Technology and Equipment Institute of Industry and Equipment TechnologyHefei University of TechnologyHefeiChina CAS Key Laboratory of Mechanical Behavior and Design of Materials Department of Precision Machinery and Precision InstrumentationUniversity of Science and Technology of ChinaHefeiChina GBA Branch of Aerospace Information Research Institute Chinese Academy of SciencesGuangzhouChina

The emergence of millimeter-scale soft actuators has signifi-cantly expanded the potential applications in areas such as search and rescue,drug delivery,and human assistance,due to their high *** these advancements,achieving precise control over the intricate movements of soft crawlers poses a significant *** this study,we have developed an all-optical approach that enables manipulation of propul-sive forces by simultaneously modifying the magnitude and direction of friction forces,thereby enabling complex motions of soft ***,the approach is not constrained by specific actuator shapes,and theoretically,any elongated photothermal actuator can be *** actuator was designed with an isosceles trapezoid shape,featuring a top width of 2mm,a bottom width of 4 mm,and a length of 8 *** our,manipulation approach,we showcase a proof-of-concept for complex soft robotic motions,including crawling(achieving speeds of up to 2.25 body lengths per minute),turning,avoiding obstacles,handling and trans-ferring objects approximately twice its own weight,and navi-gating narrow spaces along programmed *** results showcasethis all-optical manipulationapproach as a promising,yet unexplored tool for the precision and wireless control for the development of advanced soft actuators.

关键词： Light driven soft actuator all-optical manipulation laser manipulation

New Results on Equivalence of Multivariate Polynomial Matrices

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Journal of Systems Science & Complexity 2024年

作者： guan Jiancheng LIU Jinwang ZHENG Licui WU Tao LIU jie School of Mathematics and Computing Science Hunan University of Science and Technology

This paper investigates equivalence of square multivariate polynomial matrices with the determinant being some power of a univariate irreducible *** authors give a necessary and sufficient condition for this *** the authors present an algorithm to reduce a class of multivariate polynomial matrices to their Smith forms.

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