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伊氏锥虫感染的昆明小鼠血常规变化和病理组织学观察

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动物医学进展 2024年第2期45卷 79-83页

作者：甘露诺明达来郑会珍金敏李永畅巴音查汗新疆农业大学动物医学学院新疆乌鲁木齐830052

为了解伊氏锥虫感染昆明小鼠的血常规和病理组织学变化,人工感染昆明小鼠、制作血液涂片、检测血常规、分子生物学(PCR)鉴定、病理组织切片,结果显示伊氏锥虫对小鼠具有较高的致病性,随着感染天数的增加,白细胞(WBC)、中性粒细胞计数(N... 详细信息

为了解伊氏锥虫感染昆明小鼠的血常规和病理组织学变化,人工感染昆明小鼠、制作血液涂片、检测血常规、分子生物学(PCR)鉴定、病理组织切片,结果显示伊氏锥虫对小鼠具有较高的致病性,随着感染天数的增加,白细胞(WBC)、中性粒细胞计数(NEU)、红细胞压积(HCT)、平均红细胞血红蛋白量(MCH)、血小板计数(PLT)值逐渐降低,淋巴细胞百分数(LYM%)、红细胞平均体积(MCV)、红细胞分布宽度的标准差(RDWR-SD)、血小板平均容积(MPV)值在死亡时明显升高,健康小鼠血常规正常。对比试验和对照小鼠各器官大小,感染小鼠脾脏、肝脏,心脏均明显变大,肺脏及肾脏变化较小。PCR鉴定在799 bp处出现目的条带,与预期片段大小相符。病理组织学观察,试验小鼠脾脏淤血,髓质间可见大量红细胞,出现较多形态改变的淋巴滤泡;肝脏中央静脉、小叶间静脉淤血,肝细胞肿胀,肝窦间隙变窄;肺脏肺泡肿胀较明显,肺泡壁增宽,支气管出现纤维化,间质可见炎症细胞;心脏中心肌纤维稍肿胀,颗粒变性,颜色加深,并伴有较多的伊氏锥虫虫体;肾小囊间隙变窄,肾小管上皮细胞肿胀,管腔变窄;对照组小鼠均未出现病理变化。研究结果可为伊氏锥虫病的诊断与预防提供理论依据。

关键词：伊氏锥虫昆明小鼠病理切片血常规

Strong Edge Coloring of Outerplane Graphs with Independent Crossings

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Acta Mathematicae Applicatae Sinica 2024年第2期40卷 467-477页

作者： ke-Jie li Xin ZHANG School of Mathematics and Statistics Xidian UniversityXi’an 710071China

The strong chromatic index of a graph is the minimum number of colors needed in a proper edge coloring so that no edge is adjacent to two edges of the same color.An outerplane graph with independent crossings is a graph embedded in the plane in such a way that all vertices are on the outer face and two pairs of crossing edges share no common end vertex.It is proved that every outerplane graph with independent crossings and maximum degreeΔhas strong chromatic index at most 4Δ-6 if Δ≥4,and at most 8 ifΔ≤3.Both bounds are sharp.

关键词： outer-1-planar graph IC-planar graph strong edge coloring crossing

Bayesian Filtering for High-Dimensional State-Space Models With State Partition and Error Compensation

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IEEE/CAA Journal of Automatica Sinica 2024年第5期11卷 1239-1249页

作者： ke li Shunyi Zhao Biao Huang Fei liu key Laboratory of Advanced Process Control for light Industry(Ministry of Education) Institute of AutomationJiangnan UniversityWuxi 214122China Department of Chemical and Materials Engineering University of AlbertaEdmonton AB T6G 2G6Canada

In the era of exponential growth of data availability,the architecture of systems has a trend toward high dimensionality,and directly exploiting holistic information for state inference is not always computationally affordable.This paper proposes a novel Bayesian filtering algorithm that considers algorithmic computational cost and estimation accuracy for high-dimensional linear systems.The high-dimensional state vector is divided into several blocks to save computation resources by avoiding the calculation of error covariance with immense dimensions.After that,two sequential states are estimated simultaneously by introducing an auxiliary variable in the new probability space,mitigating the performance degradation caused by state segmentation.Moreover,the computational cost and error covariance of the proposed algorithm are analyzed analytically to show its distinct features compared with several existing methods.Simulation results illustrate that the proposed Bayesian filtering can maintain a higher estimation accuracy with reasonable computational cost when applied to high-dimensional linear systems.

关键词： filtering estimation error

NCAD v1.0: a database for non-coding variant annotation and interpretation

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Journal of Genetics and Genomics 2024年第2期51卷 230-242页

作者： Xiaoshu Feng Sihan liu ke li Fengxiao Bu Huijun Yuan Institute of Rare Diseases West China HospitalSichuan UniversityChengduSichuan 610044China

The application of whole genome sequencing is expanding in clinical diagnostics across various genetic disorders, and the significance of non-coding variants in penetrant diseases is increasingly being demonstrated. Therefore, it is urgent to improve the diagnostic yield by exploring the pathogenic mechanisms of variants in non-coding regions. However, the interpretation of non-coding variants remains a significant challenge, due to the complex functional regulatory mechanisms of non-coding regions and the current limitations of available databases and tools. Hence, we develop the non-coding variant annotation database (NCAD, http://***/), encompassing comprehensive insights into 665,679,194 variants, regulatory elements, and element interaction details. Integrating data from 96 sources, spanning both GRCh37 and GRCh38 versions, NCAD v1.0 provides vital information to support the genetic diagnosis of non-coding variants, including allele frequencies of 12 diverse populations, with a particular focus on the population frequency information for 230,235,698 variants in 20,964 Chinese individuals. Moreover, it offers prediction scores for variant functionality, five categories of regulatory elements, and four types of non-coding RNAs. With its rich data and comprehensive coverage, NCAD serves as a valuable platform, empowering researchers and clinicians with profound insights into non-coding regulatory mechanisms while facilitating the interpretation of non-coding variants.

关键词： Non-coding variants Annotation Variant interpretation Database

AWG-based large dynamic range fiber Bragg grating interrogation system

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Optoelectronics Letters 2024年第3期20卷 129-134页

作者： li Shufeng YUAN Pei li ke li Ting ZHU lianqing key Laboratory of the Ministry of Education for Optoelectronic Measurement Technology and Instrument Beijing Information Science&Technology UniversityBeijing 100192China Beijing Laboratory of Optical Fiber Sensing and System Beijing Information Science&Technology UniversityBeijing 100016China

Arrayed waveguide gratings(AWGs) are extensively employed in fiber Bragg grating(FBG) interrogation systems due to their compact size, lightweight nature, and excellent interrogation performance. The resolution and total measurement range of AWG-based FBG interrogation systems are constrained by the output properties of AWG. We proposed an AWG-based large dynamic range interrogation system. The temperature dependence of AWG is exploited to achieve continuous interrogation. The test results show that the interrogation system has a dynamic range of 28.67 nm, an interrogation accuracy better than 25 pm, and a wavelength resolution of 6 pm.

关键词： fiber waveguide AWG

Sustainable management of campus fallen leaves through low-temperature pyrolysis and application in Pb immobilization

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Journal of Environmental Sciences 2024年第5期139卷 281-292页

作者： Rongli Tan ke li Yue Sun Xiaoliang Fan Zhengtao Shen lingyi Tang School of Environment Nanjing UniversityNanjing 210023China School of Chemistry and Chemical Engineering Nanjing UniversityNanjing 210023China School of Earth and Engineering Sciences Nanjing UniversityNanjing 210023China Department of Earth and Atmospheric Sciences University of AlbertaEdmonton T6G 2E3Canada

Realizing campus sustainability requires the environmental-friendly and economical treatment of tremendous fallen leaves.Producing fallen leaf biochar at a low temperature is a candidate approach.In this study,six common types of fallen leaves on the campus were pyrolyzed at 300℃.The obtained biochars were characterized and the adsorption mechanisms of lead(Pb)by the fallen leaf biochars were investigated.The adsorption capacity of leaf biochar for Pb was relatively high,up to 209 mg/g(Yulania denudata leaf biochar).Adsorption of Pb onto active sites was the rate-limiting step for most leaf biochars.But for Platanus leaf biochar,intraparticle diffusion of Pb^(2+)dominated owing to the lowest adsorption capacity.However,the highest exchangeable Pb fraction(27%)indicated its potential for removing aqueous Pb^(2+).Ginkgo and Prunus cerasifera leaf biochar immobilized Pb by surface complexation and precipitation as lead oxalate.Hence,they were suitable for soil heavy metal remediation.This study shed the light on the sustainable utilization of campus fallen leaves and the application of fallen leaf biochars in heavy metal remediation.

关键词： Fallen leaves Waste management Biochar Lead removal Sorption Circular campus

Kinetic and mechanism of the reaction between Cl and several mono-methyl branched alkanes

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Journal of Environmental Sciences 2024年第1期135卷 474-482页

作者： Yan Chen Weigang Wang Junling li li Zhou Bo Shi Cici Fan ke Wang Hao Zhang Hong li Maofa Ge State key Laboratory for Structural Chemistry of Unstable and Stable Species Beijing National Laboratory for Molecular Sciences(BNLMS)CAS Research/Education Center for Excellence in Molecular SciencesInstitute of ChemistryChinese Academy of SciencesBeijing 100190China University of Chinese Academy of Sciences Beijing 100049China State key Laboratory of Environmental Criteria and Risk Assessment Chinese Research Academy of Environmental SciencesBeijing 100012China National Engineering Research Center for Flue Gas Desulfurization Department of Environmental Science and EngineeringSichuan UniversityChengdu 610065China College of Chemistry and Materials Science Hebei Normal UniversityShijiazhuang 050024China

Branched alkanes are ubiquitous in the troposphere and play an important role in the chemical processes.In this work,the rate constants and products for the reaction of Cl atoms with 3-methylhexane and 2-methylheptane were measured at room temperature(298±0.2K)and atmospheric pressure using a conventional relative rate method.The rate constants of 3-methylhexane and 2-methylheptane in units of cm~3/(mol·sec)are(3.09±0.31)×10^(-10)and(3.67±0.40)×10^(-10),respectively.Furthermore,the corresponding atmospheric lifetime of the studied branched alkanes with Cl was 6.92-89.90 hours and 5.82-75.69 hours,respectively.The estimated atmospheric lifetimes indicated that the reaction with Cl atoms could be the most important atmospheric degradation pathway for 3-methylhexane and2-methylheptane.Primary gas-phase products of the reactions were identified and quantified,and particle-phase products were also obtained.The atmosphere oxidation mechanism of Cl atoms with 3-methylhexane and 2-methylheptane is proposed.The SOA yields of 3-methylhexane and 2-methylheptane from the reaction of Cl atoms were determined to be7.96%±0.89%and 13.35%±1.50%respectively.Overall,the results reveal that the primary loss process of branched alkanes is the reaction with Cl atoms,which impacts its degradation on a regional scale.

关键词： 3-Methylhexane 2-Methylheptane Chlorine atoms Kinetics Mechanism

Protein post-translational modifications in auxin signaling

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Journal of Genetics and Genomics 2024年第3期51卷 279-291页

作者： Xiankui Cui Junxia Wang ke li Bingsheng Lv Bingkai Hou Zhaojun Ding The key Laboratory of Plant Development and Environmental Adaptation Biology Ministry of EducationSchool of Life SciencesShandong UniversityQingdaoShandong 266237China Shandong Academy of Grape JinanShandong 250100China College of Horticulture Qingdao Agricultural UniversityQingdaoShandong 266109China

Protein post-translational modifications(PTMs),such as ubiquitination,phosphorylation,and small ubiquitin-like modifier(SUMO)ylation,are crucial for regulating protein stability,activity,subcellular localization,and binding with cofactors.Such modifications remarkably increase the variety and complexity of proteomes,which are essential for regulating numerous cellular and physiological processes.The regulation of auxin signaling is finely tuned in time and space to guide various plant growth and development.Accumulating evidence indicates that PTMs play critical roles in auxin signaling regulations.Thus,a thorough and systematic review of the functions of PTMs in auxin signal transduction will improve our profound comprehension of the regulation mechanism of auxin signaling and auxin-mediated various processes.This review discusses the progress of protein ubiquitination,phosphorylation,histone acetylation and methylation,SUMOylation,and S-nitrosylation in the regulation of auxin signaling.

关键词： Arabidopsis thaliana Auxin Auxin signaling Post-translational modifications Protein regulation

Orbital angular momentum-mediated machine learning for high-accuracy mode-feature encoding

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light(Science & Applications) 2024年第3期13卷 466-477页

作者： Xinyuan Fang Xiaonan Hu Baoli li Hang Su ke Cheng Haitao Luan Min Gu Institute of Photonic Chips University of Shanghai for Science and TechnologyShanghai 200093China Centre for Artificial-Intelligence Nanophotonics School of Optical-Electrical and Computer EngineeringUniversity of Shanghai for Science and TechnologyShanghai 200093China

Machine learning with optical neural networks has featured unique advantages of the information processing including high speed,ultrawide bandwidths and low energy consumption because the optical dimensions(time,space,wavelength,and polarization)could be utilized to increase the degree of freedom.However,due to the lack of the capability to extract the information features in the orbital angular momentum(OAM)domain,the theoretically unlimited OAM states have never been exploited to represent the signal of the input/output nodes in the neural network model.Here,we demonstrate OAM-mediated machine learning with an all-optical convolutional neural network(CNN)based on Laguerre-Gaussian(LG)beam modes with diverse diffraction losses.The proposed CNN architecture is composed of a trainable OAM mode-dispersion impulse as a convolutional kernel for feature extraction,and deep-learning diffractive layers as a classifier.The resultant OAM mode-dispersion selectivity can be applied in information mode-feature encoding,leading to an accuracy as high as 97.2%for MNIST database through detecting the energy weighting coefficients of the encoded OAM modes,as well as a resistance to eavesdropping in point-to-point free-space transmission.Moreover,through extending the target encoded modes into multiplexed OAM states,we realize all-optical dimension reduction for anomaly detection with an accuracy of 85%.Our work provides a deep insight to the mechanism of machine learning with spatial modes basis,which can be further utilized to improve the performances of various machine-vision tasks by constructing the unsupervised learning-based auto-encoder.

关键词： polarization mode momentum