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Towards an open grapevine information system

Horticulture Research 2016年第1期3卷 43-50页

作者： A-F Adam-Blondon M Alaux C Pommier D Cantu Z-M Cheng gR Cramer C Davies S Delrot L Deluc g di gaspero J grimplet A Fennell JP Londo P Kersey F Mattivi S Naithani P Neveu M Nikolski M Pezzotti BI Reisch R Töpfer MA Vivier D Ware H Quesneville URgI UR1164 INRAUniversitéParis-SaclayVersailles78026France Department of Viticulture and Enology University of CaliforniaDavis95616CAUSA Department of Plant Sciences University of TennesseeKnoxville37996TNUSA Department of Biochemistry and Molecular Biology University of NevadaReno89557NVUSA CSIRO Agriculture and Food Waite CampusWIC West BuildingPMB2Glen OsmondSouth Australia5064Australia Universitéde Bordeaux ISVVEGFVUMR 1287Villenave d’OrnonF-33140France Department of Botany and Plant Pathology Oregon State UniversityCorvallis97331ORUSA Istituto di genomica Applicata Udine33100Italy Instituto de Ciencias de la Vid y del Vino(CSIC Universidad de La RiojaGobierno de La Rioja)Logroño26006Spain Plant Science Department South Dakota State UniversityBioSNTRBrookings57007SDUSA United States Department of Agriculture-Agricultural Research Service-grape genetics Research Unit Geneva14456NYUSA European Molecular Biology Laboratory The European Bioinformatics InstituteWellcome Trust Genome CampusHinxtonCB101SDCambridgeUK dipartimento QualitàAlimentare e Nutrizione Centro Ricerca ed Innovazione Fondazione Edmund MachVia E.Mach 1San Michele all'Adige38010Italia UMR Mistea INRAMontpellier34060France University of Bordeaux CBiBBordeaux33000France University of Bordeaux CNRS/LaBRITalence33405France Department of Biotechnology Universitàdegli Studi di VeronaVerona37134Italy Horticulture Section School of Integrative Plant ScienceCornell UniversityGeneva14456NYUSA JKI Institute for grapevine Breeding geilweilerhof Siebeldingen76833Germany Department of Viticulture and Oenology Institute for Wine BiotechnologyStellenbosch UniversityStellenbosch7602MatielandSouth Africa Cold Spring Harbor Laboratory Cold Spring Harbor11724NYUSA US Department of Agriculture-Agricultural Research Service NEA Robert W.Holley Center for Agriculture and HealthCornell UniversityIthaca14853NYUSA

Viticulture,like other fields of agriculture,is currently facing important challenges that will be addressed only through sustained,dedicated and coordinated *** the methods used in biology have evolved tremendously in recent years and now involve the routine production of large data sets of varied nature,in many domains of study,including grapevine research,there is a need to improve the findability,accessibility,interoperability and reusability(FAIR-ness)of these *** the heterogeneous nature of the data produced,the transnational nature of the scientific community and the experience gained elsewhere,we have formed an open working group,in the framework of the International grapevine genome Program(***),to construct a coordinated federation of information systems holding grapevine data distributed around the world,providing an integrated set of interfaces supporting advanced data modeling,rich semantic integration and the next generation of data mining *** achieve this goal,it will be critical to develop,implement and adopt appropriate standards for data annotation and *** development of this system,the grapeIS,linking genotypes to phenotypes,and scientific research to agronomical and oeneological data,should provide new insights into grape biology,and allow the development of new varieties to meet the challenges of biotic and abiotic stress,environmental change,and consumer demand.

关键词： system gained sustained

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