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Journal of Oceanology and Limnology 2022年第2期40卷 703-711页

作者： Fernando gómez Department of Biological and Environmental Sciences and Technologies University of SalentoLecce 73100Italy

Three species of dinophysoid planktonic dinoflagellates are described from the eastern Mediterranean *** *** was collected at 70-m depth in the Ionian *** small species showed a more asymmetric midbody and a proportionally longer neck when compared to the closer relative *** individuals of Dinofurcula tricornuta *** at 154-m depth in the Marmara Sea are characterized by three posterior-oriented processes when compared to its congeneric *** is the first record of the genus Dinofurcula beyond the eastern tropical Pacific *** profunda *** at 500-m depth in the Ionian Sea is characterized by ovate hypotheca and a serrate crest-like left sulcal list when compared to its close relative *** findings evidence an undescribed biodiversity in the under-sampled subphotic depths.

关键词： deep ocean Dinophyta Dinoflagellata Mediterranean Sea mesopelagic new species

Morphology and distribution of Pronoctiluca (Dinoflagellata, incertae sedis) in the Pacific Ocean

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Acta Oceanologica Sinica 2013年第4期32卷 71-76页

作者： gómez Fernando Department of Biological Oceanography Institute of Oceanography University of S o Paulo

The diversity and distribution of Pronoctiluca, a marine dinoflagellate of enigmatic systematic position, was studied in the vicinity of the Kuroshio and Oyashio Currents, the Philippines, Celebes, Sulu and South China Seas, western and central equatorial and southeast Pacific Ocean. The abundance of Pronoctiluca was high- er, with a wide vertical distribution, in eutrophic temperate regions, whereas it was nearly absent in surface waters of oligotrophic tropical regions. Most of the specimens corresponded to P. spinifera. Pronoctiluca pelagica, covered by hyaline layers and with no flagella, is considered as an encysted form. The bipartition was only observed in P. acuta-P, spinifera forms, that together with the occurrence of intermediate forms between P. spinifera and P. pelagica suggest that they may correspond to developmental stages of a single species. Pronoctiluca is essential to understanding the evolutionary history of the alveolates.

关键词： Alveolata basal dinoflagellates Dinophyceae heterotrophic flagellate Noctilucales plankton

Dicroerisma (Actiniscales, Dinophyceae) in the open Pacific Ocean, a gymnodinioid dinoflagellate with an endoskeleton

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Chinese Journal of Oceanology and Limnology 2008年第1期26卷 116-120页

作者： Fernando gómez Station Marine de Wimereux Université des Sciences et Technologies de Lille-Lille1 FRE 2816 ELICO CNRS 28 Avenue Foch BP 80 F-62930 Wimereux France

This study is the first to describe and illustrate the dinoflagellate genus Dicroerisma in the open Pacific Sea and in the southern hemisphere. Eleven individuals ascribed to Dicroerisma psilonereiella were encountered in subsurface waters (>70 m depth) from 34°N to 33°S. Another specimen that differs from the type is also illustrated. These findings reveal that Dicroerisma is a widespread genus and that there is tentative existence of another species within the genus.

关键词： Dicroerisma psilonereiella Actiniscales axostyle endoskeleton Dinophyceae the Pacific Ocean

Lessons from International Students’ Reaction to the 2011 great East Japan Earthquake:The Case of the School of Engineering at Tohoku University

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International Journal of Disaster Risk Science 2013年第3期4卷 137-149页

作者： Oscar A.gómez graduate School of global Studies Doshisha UniversityKyoto 602-0898Japan

The objective of this study is to document the reaction of international students to the 11 March 2011 emergency in order to inform and improve disaster management strategies, both public and institutional. The study is based mainly on a questionnaire survey carried out in August 2011 and follow-up interviews with students and other stakeholders. It describes the background of Tohoku University’s School of Engineering and covers six different stages in the evolution of the emergency:(1) immediate response;(2) taking shelter in Sendai;(3) life in the city during the aftermath;(4) sheltering outside Sendai;(5) coming back;plus(6) an overview of the experience. Major findings include: the process of evacuation and safety confirmation was successful, yet the subsequent phases(2 and 3) went on mostly unmanaged;students relied mostly on secondary sources of information to make decisions, mainly family and friends of the same nationality, most of whom probably were not better informed than the students themselves. Based on the findings, suggestions for future disaster planning are advanced, as well as a discussion on the challenges of information provision during crisis.

关键词： disaster mostly great

Zeckendorf representations with at most two terms to x-coordinates of Pell equations

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Science China Mathematics 2020年第4期63卷 627-642页

作者： Carlos A.gómez Florian Luca Departamento de Matematicas Universidad del ValleCali 25360Colombia School of Mathematics University of the WitwatersrandWits 2050South Africa Max Planck Institute for Mathematics Bonn 53111Germany Department of Mathematics Faculty of SciencesUniversity of OstravaOstrava 70103Czech Republic

In this paper,we find all positive squarefree integers d satisfying that the Pell equation X^2-d Y^2=±1 has at least two positive integer solutions(X,Y)and(X′,Y′)such that both X and X′have Zeckendorf representati... 详细信息

关键词： Pell equation Fibonacci numbers lower bounds for linear forms in logarithms reduction method

Coarse-graining auto-encoders for molecular dynamics

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npj Computational Materials 2019年第1期5卷 48-56页

作者： Wujie Wang Rafael gómez-Bombarelli Department of Materials Science and Engineering Massachusets Institute of Technology77 Massachusetts AvenueCambridgeMA 02319USA

Molecular dynamics simulations provide theoretical insight into the microscopic behavior of condensed-phase materials and,as a predictive tool,enable computational design of new ***,because of the large spatial and temporal scales of thermodynamic and kinetic phenomena in materials,atomistic simulations are often computationally ***-graining methods allow larger systems to be simulated by reducing their dimensionality,propagating longer timesteps,and averaging out fast ***-graining involves two coupled learning problems:defining the mapping from an all-atom representation to a reduced representation,and parameterizing a Hamiltonian over coarse-grained *** propose a generative modeling framework based on variational auto-encoders to unify the tasks of learning discrete coarse-grained variables,decoding back to atomistic detail,and parameterizing coarse-grained force *** framework is tested on a number of model systems including single molecules and bulk-phase periodic simulations.

关键词： dynamics representation steps

Evaluating the influence of air pollution on solar radiation observations over the coastal region of Alicante(Southeastern Spain)

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Journal of Environmental Sciences 2023年第4期126卷 633-643页

作者： Igor gómez Sergio Molina Juan Joségaliana-Merino Department of Applied Physics Faculty of SciencesUniversity of AlicanteSection 99E-03080 AlicanteSpain Multidisciplinary Institute for Environmental Studies(MIES)“Ramón Margalef” University of AlicanteSection 99E-03690 AlicanteSpain Department of Physics Systems Engineering and Signal TheoryUniversity of AlicanteSection 99E-03080 AlicanteSpain University Institute of Physics Applied to Sciences and Technologies University of AlicanteSection 99E-03080 AlicanteSpain

The present study evaluates ground-based downward surface shortwave radiation (Rs) over the coastal region of Alicante (Southeastern Spain).Hourly measurements collected over the eleven-year period 2010-2020 are *** weather stations located over the region capital,Alicante,have been selected as representative of urban and suburban *** additional weather stations far from the city have been selected representing rural *** is significantly reduced over the urban station during the morning hours within the winter season compared to the observations recorded over the suburban and rural stations,with a global mean difference of-81 and-120 W/m^(2)at 10 LT,***,no significant differences are obtained during the midday sun,with a global mean difference of-20 W/m^(2)between the urban and rural *** the aim of explaining these differences,the current paper investigates the relationship between Rsand different air pollutants:NOx,SO_(2),and fine particulate matter (PM_(2.5)and PM_(10)) as well as the wind field measured at the urban and suburban *** results found in this work point towards a close relationship between Rsand NOxconcentrations annual cycles,which are also influenced by the prevailing wind circulations observed over the study area.A global mean NOxconcentration of 107μg/m^(3)is observed over the urban station at 10 LT during the winter *** contrast,these high concentrations are significantly reduced over the suburban station,with global mean value of 40μg/m^(3)at 10 LT,for this period of the year.

关键词： Solar radiation Air pollution Weather-concentration relationship Coastal cities Atmospheric conditions Wind field

Steatosis and insulin resistance in hepatitis C: A way out for the virus?

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World Journal of gastroenterology 2009年第40期15卷 5014-5019页

作者： José A Del Campo Manuel Romero-gómez Unit for The Clinical Management of Digestive Diseases and CIBERehd Hospital Universitario de Valme

The hepatitis C virus (HCV) induces lipid accumulation in vitro and in vivo. The pathogenesis of steatosis is due to both viral and host factors. Viral steatosis is mostly reported in patients with genotype 3a, whereas meta-bolic steatosis is often associated with genotype 1 and metabolic syndrome. Several molecular mechanisms responsible for steatosis have been associated with the HCV core protein, which is able to induce gene expres-sion and activity of sterol regulatory element binding protein 1 (SREBP1) and peroxisome proliferator-activat-ed receptor γ (PPARγ), increasing the transcription of genes involved in hepatic fatty acid synthesis. Steatosis has been also implicated in viral replication. In infected cells, HCV core protein is targeted to lipid droplets which serve as intracellular storage organelles. These studies have shown that lipid droplets are essential for virus assembly. Thus, HCV promotes steatosis as an eff icient mechanism for stable viral replication. Chronic HCV in-fection can also induce insulin resistance. In patients with HCV, insulin resistance is more strongly associated with viral load than visceral obesity. HCV seems to lead to insulin resistance through interference of intracellular insulin signalling by HCV proteins, mainly, the serine phosphorylation of insulin receptor-1 (IRS-1) and im-pairment of the downstream Akt signalling pathway. The HCV core protein interferes with in vitro insulin signal-ling by genotype-specif ic mechanisms, where the role of suppressor of cytokine signal 7 (SOCS-7) in genotype 3aand mammalian target of rapamycin (mTOR) in geno-type 1 in IRS-1 downregulation play key roles. Steatosis and insulin resistance have been associated with f ibrosis progression and a reduced rate of sustained response to peginterferon plus ribavirin.

关键词： Steatosis Insulin resistance Hepatitis Cvirus

Sampling lattices in semi-grand canonical ensemble with autoregressive machine learning

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npj Computational Materials 2022年第1期8卷 588-597页

作者： James Damewood Daniel Schwalbe-Koda Rafael gómez-Bombarelli Department of Materials Science and Engineering Massachusetts Institute of Technology77 Massachusetts AvenueCambridgeMA02319USA

Calculating thermodynamic potentials and observables efficiently and accurately is key for the application of statistical mechanics simulations to materials ***,naive Monte Carlo approaches,on which such calculations are often dependent,struggle to scale to complex materials in many state-of-the-art disciplines such as the design of high entropy alloys or multi-component *** address this issue,we adapt sampling tools built upon machine learning-based generative modeling to the materials space by transforming them into the semi-grand canonical ***,we show that the resulting models are transferable across wide ranges of thermodynamic conditions and can be implemented with any internal energy model U,allowing integration into many existing materials *** demonstrate the applicability of this approach to the simulation of benchmark systems (AgPd,CuAu) that exhibit diverse thermodynamic behavior in their phase ***,we discuss remaining challenges in model development and promising research directions for future improvements.

关键词： canonical thermodynamic directions

glutaminolysis-ammonia-urea Cycle Axis,Non-alcoholic Fatty Liver Disease Progression and Development of Novel Therapies

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Journal of Clinical and Translational Hepatology 2022年第2期10卷 356-362页

作者： Ángela Rojas María Rosario garcía-Lozano Antonio gil-gómez Manuel Romero-gómez Javier Ampuero Department of Unit of Digestive Diseases Virgen del Rocío University HospitalSevilleSpain SeLiver group at the Insti-tute of Biomedicine of Seville(IBIS) Virgen del Rocío University Hospital/CSIC/University of SevilleSevilleSpain Center for the Study of Liver and gastrointestinal Diseases(CIBERehd) Carlos III National Institute of HealthMadridSpain De-partment of Organic and Medicinal Chemistry Faculty of PharmacyUniversity of SevilleE-41071SevilleSpain

The prevalence of non-alcoholic fatty liver disease(NAFLD)is increasing worldwide,reflecting the current epidemics of obesity,insulin resistance,type 2 diabetes mellitus,and metabolic *** is characterized by the accumulation of fat in the liver,and is known to be a cause of *** many pathways have been proposed,the cause of NAFLD-linked fibrosis progression is still unclear,which posed challenges for the development of new therapies to prevent NASH-related cirrhosis and hepatocellular *** is associated with activation of hepatic stellate cells(HSC)and accumulation of excess extracellular matrix proteins,and inhibiting the activation of HSCs would be expected to slow the progression of *** molecular signals and pathways such as oxidative stress and glutaminolysis have been reported to promote HSC *** mechanisms are plausible antifibrotic targets in NASH,as the activation of HSCs the proliferation of myofibroblasts depend on those *** review summarizes the role of the glutaminolysis-ammonia-urea cycle axis in the context of NAFLD progression,and shows how the axis could be a novel therapeutic target.

关键词： Non-alcoholic fatty liver disease Cirrhosis Fibrosis glutaminoly-sis Ammonia Urea