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Machine learning and bioinformatics to identify biomarkers in response to Burkholderia pseudomallei infection in mice

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BIOCELL 2024年第4期48卷 613-621页

作者： YAO fang FEI XIA FEIFEI TIAN L EI QU fang YANG JUAN fang zHENHONG HU HAICHAO LIU Department of Respiratory and Critical Care Medicine General Hospital of Center Theater of PLAWuhan430070China School of Medicine Wuhan University of Science and TechnologyWuhan430065China School of Life Science and Engineering Southwest Jiaotong UniversityChengdu611756China

Objective:In the realm of Class I pathogens,Burkholderia pseudomallei(BP)stands out for its propensity to induce severe *** the intricate interactions between BP and host cells is imperative for comprehending the dynamics of BP infection and discerning biomarkers indicative of the host cell response ***:mRNA extraction from BP-infected mouse macrophages constituted the initial step of our *** gene expression arrays,the extracted RNA underwent conversion into digital *** percentile shift method facilitated data processing,with the identiﬁcation of genes manifesting signiﬁcant differences accomplished through the application of the ***,a comprehensive analysis involving Gene Ontology enrichment and Kyoto Encyclopedia of Genes and Genomes pathway was conducted on the differentially expressed genes(DEGs).Leveraging the ESTIMATE algorithm,gene signatures were utilized to compute risk scores for gene expression *** vector machine analysis and gene enrichment scores were instrumental in establishing correlations between biomarkers and macrophages,followed by an evaluation of the predictive power of the identiﬁed ***:The functional and pathway associations of the DEGs predominantly centered around G protein-coupled receptors.A noteworthy positive correlation emerged between the blue module,consisting of 416 genes,and the ***4,identiﬁed through support vector machine analysis among intersecting genes,indicated a robust interaction with macrophages,suggesting its potential as a robust ***4 exhibited commendable predictive efﬁcacy,with BP infection inducing its expression in both macrophages and mouse lung *** blotting in macrophages conﬁrmed a signiﬁcant upregulation of FzD4 expression from 0.5 to 24 h *** mouse lung tissue,FzD4 manifested higher expression in the cytoplasm of pulmonary epithelial cells in BP-infected lungs than in the

关键词： Burkholderia pseudomallei Microarray assay Machine learning Bioinformatics FzD4

Method to Remove Handwritten Texts Using Smart Phone

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Journal of Harbin Institute of Technology(New Series) 2024年第2期31卷 12-21页

作者： Haiquan fang School of Public Administration Zhejiang University of TechnologyHangzhou 310023China zhejiang Xingsuan Technology Co. LtdHangzhou 310023China

To remove handwritten texts from an image of a document taken by smart phone,an intelligent removal method was proposed that combines dewarping and Fully Convolutional Network with Atrous Convolutional and Atrous Spatial Pyramid Pooling(FCN-AC-ASPP).For a picture taken by a smart phone,firstly,the image is transformed into a regular image by the dewarping ***,the FCN-AC-ASPP is used to classify printed texts and handwritten ***,handwritten texts can be removed by a simple *** show that the classification accuracy of the FCN-AC-ASPP is better than FCN,DeeplabV3+,*** handwritten texts removal effect,the method of combining dewarping and FCN-AC-ASPP is superior to FCN-AC-ASP alone.

关键词： handwritten texts printed texts classification FCN-AC-ASPP smart phone

A New Method for Deriving High-Vertical-Resolution Wind Vector Data from the L-Band Radar Sounding System in China

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Advances in Atmospheric Sciences 2024年第11期41卷 2192-2202页

作者： fang YUAN zijiang zHOU Jie LIAO National Meteorological Information Center China Meteorological AdministrationBeijing 100081China

High-vertical-resolution radiosonde wind data are highly valuable for describing the dynamics of the meso-and microscale atmosphere. However, the current algorithm used in China's L-band radar sounding system for calculating highvertical-resolution wind vectors excessively smooths the data, resulting in significant underestimation of the calculated kinetic energy of gravity waves compared to similar products from other countries, which greatly limits the effective utilization of the data. To address this issue, this study proposes a novel method to calculate high-vertical-resolution wind vectors that utilizes the elevation angle, azimuth angle, and slant range from L-band radar. In order to obtain wind data with a stable quality, a two-step automatic quality control procedure, including the RMSE-F(root-mean-square error F) test and elemental consistency test are first applied to the slant range data, to eliminate continuous erroneous data caused by unstable signals or radar malfunctions. Then, a wind calculation scheme based on a sliding second-order polynomial fitting is utilized to derive the high-vertical-resolution radiosonde wind vectors. The evaluation results demonstrate that the wind data obtained through the proposed method show a high level of consistency with the high-resolution wind data observed using the Vaisala Global Positioning System and the data observed by the new Beidou Navigation Sounding System. The calculation of the kinetic energy of gravity waves in the recalculated wind data also reaches a level comparable to the Vaisala observations.

关键词： L-band radar sounding system upper air high-vertical-resolution radiosonde wind vectors quality control polynomial fitting

Primary acinic cell carcinoma of the breast: A case report and review of literature

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World Journal of Clinical Cases 2024年第1期12卷 196-203页

作者： Jia-Sheng Ding Min zhang fang-fang zhou Department of Intensive Care Unit Lishui Central HospitalThe Fifth Affiliated Hospital of Wenzhou Medical UniversityLishui 323000Zhejiang ProvinceChina Department of Pathology Lishui Central HospitalThe Fifth Affiliated Hospital of Wenzhou Medical UniversityLishui 323000Zhejiang ProvinceChina Department of Ultrasound Lishui Central HospitalThe Fifth Affiliated Hospital of Wenzhou Medical UniversityLishui 323000Zhejiang ProvinceChina

BACKGROUND In the current World Health Organization classification,acinic cell carcinoma(AcCC)of the breast is considered a rare histological subtype of triple-negative breast *** of the few reports in the literature,data concerning clinical outcomes are ***,we report a case of AcCC of the breast in a 48-year-old woman.A 48-year-old woman with a mass in her right breast came to our hospital for further *** and an ultrasound(US)scan showed a mass in the upper inner side of the right *** then underwent surgery to resect the mass in her right *** pathological examination revealed that the tumor had abundant acinar-like structures formed by tumor cells with prominent eosinophilic granules in the cytoplasm,consistent with acinar cell *** results of immunohistochemical analysis supported the diagnosis of breast acinar cell *** months later,she underwent breast-conserving surgery and sentinel lymph node *** pTNM stage was *** surgery,the patient received 30 radiotherapy *** patient was followed up for a period of one year,and no recurrence was *** of the breast is a rare type of malignant *** it is usually asym-ptomatic and can be detected by imaging studies,routine breast US or mamm-ograms are ***,there are no characteristic diagnostic imaging findings or clinical manifestations,so immunohistochemical examination is critical for an accurate diagnosis of AcCC of the breast.

关键词： Acinic cell carcinoma Breast Malignant tumor Immunohistochemical Surgery Case report

Quantifying structural distortion manipulation for desired perovskite phase:PartⅠ.Paradigm demonstration in tungsten oxides

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Journal of Materiomics 2024年第2期10卷 293-303页

作者： Cheng fang Hong Wang Siqi Shi State Key Laboratory of Green Building Materials China Building Materials AcademyBeijing100024China Beijing Key Laboratory of Solar Energy and Building Energy-saving Glass Materials Processing Technology China Building Materials AcademyBeijing100024China Materials Genome Initiative Center Shanghai Jiao Tong UniversityShanghai200240China School of Materials Science and Engineering Shanghai Jiao Tong UniversityShanghai200240China School of Materials Science and Engineering Shanghai UniversityShanghai200444China Materials Genome Institute Shanghai UniversityShanghai200444China

Slight distortions can cause dramatic changes in the properties of crystalline perovskite materials and their *** to the numerous types of distortions and unclarified distortion-structure relations,a quantitative distortion manipulation for the desired crystalline phase of perovskite materials suitable for various application remains ***,by establishing parameter sets to systematically describe the types,magnitudes and positional relations involved in distortions,we are able to interpret the structural regulations and manipulation strategies in 7 reported crystal *** the con-struction of distortion-phase-property functional curves,we further propose a paradigm to quantify the structural distortion manipulation for desired perovskite *** the example of perovskite-like tungsten oxides,we successfully quantify their volume shrinkage and symmetry increase during *** work verifies that the complicated research and development of perovskite materials can be simplified into a mathematical problem solving process,which will inspire researchers with different backgrounds to participate,especially mathematicians and computer scientists.

关键词： Distortion manipulation Distortion-phase-property function Coordination polyhedron Tungsten oxide Perovskite

Assessment and Enhancement of FRC of Power Systems Considering Thermal Power Dynamic Conditions

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CSEE Journal of Power and Energy Systems 2024年第4期10卷 1371-1383页

作者： Feng Hong Yalei Pang Weiming Ji Lu Liang fang fang Junhong Hao Jizhen Liu State Key Laboratory of Alternate Electric Power System with Renewable Energy Sources and School of Control and Computer Engineering North China Electric Power UniversityBeijing 102206China State Key Laboratory of Alternate Electric Power System with Renewable Energy Sources School of Energy Power and Mechanical EngineeringNorth China Electric Power UniversityBeijing 102206China

Frequency stability and security have been a vital challenge as large-scale renewable energy is integrated into power *** contrast,the proportion of traditional thermal power units decreases during the decarbonization transformation process,resulting in poor frequency *** paper aims to explore the potential of frequency regulation support,dynamic assessment,and capacity promotion of thermal power plants in the transition *** the dynamic characteristics of the main steam working fluid under different working conditions,a nonlinear observer is constructed by extracting the main steam pressure and valve opening degree *** real-time frequency modulation capacity of thermal power units can provide a dynamic state for the power grid.A dynamic adaptive modification for primary frequency control(PFC)of power systems,including wind power and thermal power,is proposed and *** power dynamic allocation factor is adaptively optimized by predicting the speed droop ratio,and the frequency modulation capability of the system is improved by more than 11%under extreme ***,through the Monte Carlo simulation of unit states of the system under various working conditions,the promotion of the frequency regulation capacity with high wind power penetration(WPP)is verified.

关键词： Dynamic evaluation frequency regulation power system predictive modeling wind penetration

EID-based Load Frequency Control for Interconnected Hybrid Power System Integrated with RESs

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CSEE Journal of Power and Energy Systems 2024年第5期10卷 2147-2155页

作者： fang Liu Kailiang zhang Runmin zou School of Automation Central South UniversityChangsha 410083China

By considering the influence of renewable energy sources(RESs)integration on multi-area interconnected hybrid power systems,this paper proposes an equivalent input disturbance(EID)-based load frequency control(LFC)strategy,which can effectively overcome the factors of random disturbance,model uncertainties and communication ***,an equivalent mathematical LFC model of an interconnected system is ***,the proposed robust controllers,based on the idea of EID,are designed to suppress the randomness and volatility of the renewable energy grid connection and coordinate the frequency fluctuation of the interconnected power ***,the validity and superiority of the established topology structure and the superiority of the proposed strategy are demonstrated by dynamic time domain response experiments under the condition of high penetration of renewable energy.

关键词： Interconnected hybrid power system LFC renewable energy sources(RESs) robust controllers

Effects of retained dry material on the impact,overflow and landing dynamics

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Journal of Rock Mechanics and Geotechnical Engineering 2024年第9期16卷 3629-3640页

作者： Jun fang Yifei Cui Haiming Liu State Key Laboratory of Hydroscience and Engineering Tsinghua UniversityBeijingChina Department of Civil and Environmental Engineering The Hong Kong University of Science and TechnologyHong KongChina

During long-term operation,the performance of obstacles would be changed due to the material accumulating upslope the ***,the effects of retained material on impact,overflow and landing dynamics of granular flow have not yet been *** address this gap,physical flume tests and discrete element simulations are conducted considering a range of normalized deposition height h0/H from 0 to 1,where h0 and H represent the deposition height and obstacle height,*** analytical model is modified to evaluate the flow velocity and flow depth after interacting with the retained materials,which further serve to calculate the peak impact force on the ***,the computed impact forces successfully predict the experimental results when a≥25°.In addition,the results indicate that a higher h0/H leads to a lower dynamic impact force,a greater landing distance L,and a larger landing coefficient Cr,where Cr is the ratio of slope-parallel component of landing velocity to flow velocity just before *** to the existing overflow model,the measured landing distance L is underestimated by up to 30%,and therefore it is insufficient for obstacle design when there is retained ***,the recommended Cr in current design practice is found to be nonconservative for estimating the landing velocity of geophysical *** study provides insightful scientific basis for designing obstacles with deposition.

关键词： Granular flow Obstacle deposition Impact Overflow Landing

Uniqueness on Difference Operators of Meromorphic Functions of Infinite Order

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Acta Mathematica Sinica,English Series 2024年第2期40卷 511-527页

作者： Hui LI Ming Liang fang Xiao YAO School of Science China University of Mining and TechnologyBeijing 100083P.R.China Institute of Mathematics Academy of Mathematics and System SciencesChinese Academy of SciencesBeijing 100190P.R.China School of Sciences Hangzhou Dianzi UniversityHangzhou 310012P.R.China School of Mathematical sciences and LPMC Nankai UniversityTianjin 300071P.R.China

We investigate the uniqueness problems of meromorphic functions and their difference operators by using a new *** is proved that if a non-constant meromorphic function f shares a non-zero constant and ∞ counting multiplicities with its difference operators Δcf(z) and Δ_(c)^(2)f(z), thenΔcf(z)≡Δ_(c)^(2)f(z).In particular,we give a difference analogue of a result of *** method has two distinct features:(ⅰ) It converts the relations between functions into the corresponding *** makes it possible to deal with the uniqueness problem by linear algebra and combinatorics.(ⅱ) It circumvents the obstacle of the difference logarithmic derivative lemma for meromorphic functions of infinite order,since this method does not depend on the growth of the ***,the idea in this paper can also be applied to the case for several variables.

关键词： Uniqueness meromorphic functions difference operators infinite order