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Insights into the genus diaporthe:phylogenetic species delimitation in the *** species complex

Fungal diversity 2014年第4期67卷 203-229页

作者： dhanushka Udayanga Lisa A.Castlebury Amy Y.Rossman Ekachai Chukeatirote Kevin d.Hyde Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China WorldAgroforestry Centre East and Central AsiaKunming 650201China Institute of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Systematic Mycology and Microbiology Laboratory United States Department of Agriculture-Agricultural Research ServiceBeltsvilleMD 20705USA

The genus diaporthe comprises pathogenic,endophytic and saprobic species with both temperate and tropical *** diversification,phenotypic plasticity and extensive host associations have long complicated accurate identifications of species in this *** delimitation of the generic type species diaporthe eres has been uncertain due to the lack of ex-type *** limits of *** and closely related species were evaluated using molecular phylogenetic analysis of eight genes including nuclear ribosomal internal transcribed spacer(ITS),partial sequences of actin(ACT),dNA-lyase(Apn2),translation elongation factor 1-α(EF1-α),beta-tubulin(TUB),calmodulin(CAL),60s ribosomal protein L37(FG1093)and histone-3(HIS).The occurrence of sequence heterogeneity of ITS within *** is observed,which complicates the analysis and may lead to overestimation of the species *** strict criteria of Genealogical Concordance Phylogenetic Species Recognition(GCPSR)were applied to resolve species boundaries based on individual and combined analyses of other seven genes except the *** accept nine distinct phylogenetic species including diaporthe alleghaniensis,***,***,***,***,***,***,*** and *** are designated for ***,***,***,***,*** and *** descriptions and illustrations are provided for these *** designed primers are introduced to amplify and sequence the Apn2(dNA-lyase)gene in *** on phylogenetic informativeness profiles,EF1-α,Apn2 and HIS genes are recognised as the best markers for defining species in the *** complex.

关键词： diaporthaceae dNA-lyase Epitypification Gene discordance Generic type Molecular phylogeny New primers Phylogenetic informativeness Speciation

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Some stromatic pyrenomycetous fungi from northern ***,Camillea and Hypoxylon(Xylariaceae)

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Fungal diversity 2012年第4期55卷 65-76页

作者： L.N.Vasilyeva S.L.Stephenson K.d.Hyde A.H.Bahkali Institute of Biology and Soil Science Far East Branch of the Russian Academy of SciencesVladivostok 690022Russia University of Arkansas FayettevilleAR 72701USA Institute of Excellence in Fungal Research Mae Fah Lung UniversityChiang Rai 57100Thailand School of Science Mae Fah Lung UniversityChiang Rai 57100Thailand Botany and Microbiology department College of ScienceKing Saud UniversityRiyadh 11442Saudi Arabia

Fourteen species of stromatic pyrenomycetous fungi(family Xylariaceae)collected in northern Thailand are *** of these(Biscogniauxia lithocarpi,Camillea malaysiensis ***,Hypoxylon juventuterubrum,***,***,and ***)are described as taxa new to *** of these taxa are provided,and they are compared with similar taxa known from the Western Hemisphere.

关键词： Ascomycota SE Asia Taxonomy Xylariales

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Appressorial interactions with host and their evolution

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Fungal diversity 2021年第5期110卷 75-107页

作者： K.W.Thilini Chethana Ruvishika S.Jayawardena Yi-Jyun Chen Sirinapa Konta Saowaluck Tibpromma Chayanard Phukhamsakda Pranami d.Abeywickrama Milan C.Samarakoon Chanokned Senwanna Ausana Mapook Xia Tang deecksha Gomdola diana S.Marasinghe Oundhyalah d.Padaruth Abhaya Balasuriya Jianping Xu Saisamorn Lumyong Kevin d.Hyde Innovative institute of plant health zhongkai university of agriculture and engineeringguangzhou 510225people’s republic of china center of excellence in fungal research mae fah luang universitychiang rai 57100thailand school of science mae fah luang universitychiang rai 57100thailand key laboratory for plant diversity and biogeography of east asia kunming institute of botanychinese academy of sciencekunming 650201yunnanpeople’s republic of china beijing key laboratory of environment-friendly management on fruit diseases and pests in north china institute of plant and environment protectionbeijing academy of agriculture and forestry sciencesbeijing 100097people’s republic of china department of biology faculty of sciencechiang mai universitychiang mai 50200thailand engineering and research center for southwest biopharmaceutical resource of national education ministry of china gui zhou universitygui yang 550025gui zhoupeople’s republic of china department of plant sciences faculty of agriculturerajarata university of sri lankaanuradhapurasri lanka department of biology mcmaster university1280 main street westhamiltonon l8s 4k1canada center of excellence in microbial diversity and sustainable utilization faculty of sciencechiang mai universitychiang mai 50200thailand academy of science the royal society of thailandbangkok 10300thailand engineering research center of chinese ministry of education for edible and medicinal fungi jilin agricultural universitychangchun city 130118jilin provincepeople’s republic of china department of entomology and plant pathology faculty of agriculturechiang mai universitychiang mai 50200thailand center for mountain futures kunming institute of botanykunming 650201yunnanpeople’s republic of china

Fungi have evolved diverse strategies to acquire nutrients as endophytes,saprobes,symbionts,or *** have been intensively studied due to their importance in attaching and breaching the host *** specialized infection structures have evolved into various morpho-types:proto-appressoria,hyaline appressoria,melanized(dark)appressoria,and compound *** this review,we discuss the differences in the formation,differentiation,and function of appres-soria among fungi with diverse life *** dNA sequence information,LSU,5.8S,SSU and rpb2 gene fragments,we reconstructed the ancestral states for appressorial types in the main phyla of fungi and fungus-like organisms and found that the hyaline appressoria was the most ancestral *** analysis estimated proto-appressoria diversification during the Mesozoic period(92-239 million years ago),however,its origin remains *** data suggest that these hyaline appressoria diversified into melanized or compound appressoria,with evidence of adaptive radiation.

关键词： Ancestral characters Evolution Host-recognition Hyaline appressoria Infection process Melanized appressoria Proto-appressoria

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Profile of Bionectriaceae,Calcarisporiaceae,Hypocreaceae,Nectriaceae,Tilachlidiaceae,Ijuhyaceae ***.,Stromatonectriaceae *** Xanthonectriaceae ***

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Fungal diversity 2023年第1期118卷 95-271页

作者： R.H.Perera K.d.Hyde E.B.G.Jones S.S.N.Maharachchikumbura d.Bundhun E.Camporesi A.Akulov J.K.Liu Z.Y.Liu Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouPeople’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Innovative Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand department of Botany and Microbiology College of ScienceKingdom of Saudi ArabiaKing Saud UniversityP.O Box 2455Riyadh 11451Saudi Arabia A.M.B Circolo Micologico“Giovanni Carini”C.P.314BresciaItaly A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForliItaly Societaper Gli Studi Naturalistici della Romagna C.P.143BagnacavalloRAItaly department of Mycology and Plant Resistance V.N.Karazin Kharkiv National UniversityMaidan Svobody 4Kharkiv 61022Ukraine

This paper provides outlines for Bionectriaceae,Calcarisporiaceae,Hypocreaceae,Nectriaceae,Tilachlidiaceae,Ijuhy-aceae,Stromatonectriaceae and Xanthonectriaceae with taxonomic *** provide up-to-date dNA sequence-based phylogenies including combined gene analysis of ITS,LSU,rpb2,tef1 and tub2 for Hypocreales and accept 17 *** new families and 12 new species are introduced with descriptions and illustrations,while 13 new records and one new species combination are *** we mainly detail the taxonomy of Bionectriaceae,Hypocreaceae,Nectriaceae and Tilachlidiaceae,Ijuhyaceae ***.,Stromatonectriaceae *** Xanthonectriaceae *** introduced in this study based on phenotypic and molecular *** each family we provide a list of accepted genera,the taxo-nomic history,morphological descriptions,taxonomic placement based on dNA sequence data and illustrate the type *** of each family are illustrated based on the type herbarium material or fresh specimens where available,or provide relevant *** on ecological and economic importance of the families are also given.

关键词： 15 New taxa Genera incertae sedis Hypocreales New records Outline Phylogeny Sordariomycetes Taxonomy

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Morphology, Phylogeny and Culture Characteristics of Ganoderma gibbosum Collected from Kunming, Yunnan Province, China

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Phyton-International Journal of Experimental Botany 2020年第3期89卷 743-764页

作者： Thatsanee Luangharn Samantha C.Karunarathna Peter E.Mortimer Kevin d.Hyde Jianchu Xu Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of SciencesKunming650201China University of Chinese Academy of Sciences Beijing100049China East and Central Asia Regional Office World Agroforestry Centre(ICRAF)Kunming650201China Centre for Mountain Futures Kunming Institute of BotanyKunming650201China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai57100Thailand

Ganoderma is a genus of medicinally and economically important mushrooms in the family *** species are popular medicinal mushrooms and their health benefits are *** is a cosmopolitan genus that is widely distributed in both tropical and temperate *** genus is characterized by its unique laccate or non-laccate species with double-walled ***,we report on eight collections of *** collected during surveys in Kunming,Yunnan Province,*** specimens are described and illustrated based on macro-and micro-morphological *** dNA of the eight *** strains were extracted using the Biospin Fungal Extraction Kit following manufacturer *** of the Internal Transcribed Spacer(nrITS)region was carried out using ITS5/ITS4 primers and LROR/LR5 for the nuclear ribosomal large subunit 28S rdNA gene(LSU).Phylogenetic analysis with closely related species to *** showed that all eight collections grouped with *** with 100%bootstrap *** similarity and morphological variations within the eight collections of *** are discussed.

关键词： Chinese medicine medicinal mushroom morphology phylogeny

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diaporthe species occurring on citrus in China

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Fungal diversity 2013年第4期61卷 237-250页

作者： Feng Huang Xin Hou Megan M dewdney Yushi Fu Guoqing Chen Kevin d Hyde Hongye Li Institute of Biotechnology Zhejiang UniversityHangzhouChina 310058 Citrus Research and Educator Center University of FloridaLake AlfredFL 33850USA Institute of Excellence in Fungal Research Mae Fah Luang UniversityChiang RaiThailand 57100 School of Science Mae Fah Luang UniversityChiang RaiThailand 57100

diaporthe species are important pathogens of a wide range of hosts including many economically important *** citri is generally accepted to cause melanose of Citrus fruits,leaves and shoots;stem-end rot of fruits and gummosis of perennial *** this study,147 strains of diaporthe were isolated from diseased leaves,twigs,fruits and branches of Citrus from Shaanxi,Zhejiang,Guangxi,Fujian,Guangdong,Jiangxi,Hunan,Chongqing and Shanghai and identified by morphology and molecular analysis of nuclear ribosomal internal transcribed spacer(ITS),partial sequences of translation elongation factor 1-α(EF 1-α),tubulin(TUB)and calmodulin(CAL)*** strains from Citrus clustered in three *** citri was the predominant species and is compared with strains from Florida,USA,where this species was first collected and *** new taxa differing from *** are described as *** and *** in this *** tests indicate that all three species are able to cause stem-end rot of fruits,while only *** could cause melanose on leaves.

关键词： diaporthe citri Melanose Morphology Phomopsis Phylogenetic analysis

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Microfungi on Tectona grandis(teak)in Northern Thailand

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Fungal diversity 2017年第1期82卷 107-182页

作者： Mingkwan doilom Asha J.dissanayake dhanushka N.Wanasinghe Saranyaphat Boonmee Jian-Kui Liu d.Jayarama Bhat Joanne E.Taylor Ali.H.Bahkali Eric H.C.McKenzie Kevin d.Hyde Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of Sciences132 Lanhei RoadKunming 650201China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo.9 of Shu Guang Hua Yuan Zhong LuHaidian DistrictBeijing 10097China Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Formerly department of Botany Goa UniversityTaleigãoGoaIndia No.128/1-J Azad Housing SocietyCurcaGoa VelhaIndia Royal Botanic Garden Edinburgh 20A Inverleith RowEdinburgh EH35LRUK department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 1145Saudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand

To date there is virtually no information available concerning the fungi associated with Tectona grandis(teak)(Lamiaceae)in *** this study,samples of microfungi were collected from both asymptomatic stems and dead wood,and symptomatic branches,stem and leaves of *** 27 sites in six provinces(Chiang Mai,Chiang Rai,Phayao,Phitsanulok,Phrae and Uttaradit Provinces).Morphology and combined multi-gene phylogeny(CAL,GAPdH,ITS,LSU,RPB2,SSU,TEF1 and TUB)were used to identify taxa.A total of 270 collections,representing 28 fungal species residing in 12 families,7 orders and 21 genera,with three species of uncertain taxonomic placement were *** these,one family,three genera and 14 species are new to *** new family,Pseudocoleodictyosporaceae is introduced based on its distinct lineage in the dothideomycetes and its unique morphology as compared to Roussoellaceae and *** new genera are Neooccultibambusa,Pseudocoleodictyospora and *** newly described species are diaporthe neoraonikayaporum,***,***,***,Hermatomyces tectonae,***,Manoharachariella tectonae,Neooccultibambusa chiangraiensis,Pseudocoleodictyospora sukhothaiensis,***,***,Rhytidhysteron tectonae,Subglobosporium tectonae and Tubeufia *** species are known published taxa including Alternaria tillandsiae,Berkleasmium talaumae,Boerlagiomyces macrospora,Ceratocladium purpureogriseum,Fusarium solani,Helicoma siamense,Lasiodiplodia theobromae,Macrovalsaria megalospora,Paradictyoarthrinium diffractum,Phaeoacremonium italicum,Sphaeropsis eucalypticola,Stachybotrys levispora,*** and Thaxteriellopsis *** or reference specimens are designated for Boerlagiomyces macrospora and Macrovalsaria *** megalospora is transferred from Botryosphaeriaceae to dothideomycetes genus,incertae sedis based on taxonomy and phylogenetic analysis,which indicate i

关键词： Ascomycota Basidiomycota dothideomycetes Sordariomycetes Taxonomy Multi-gene phylogenetics

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Microfungi on Tamarix

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Fungal diversity 2017年第1期82卷 239-306页

作者： Kasun M.Thambugala dinushani A.daranagama Alan J.L.Phillips Timur S.Bulgakov darbhe J.Bhat Erio Camporesi Ali H.Bahkali Prapassorn d.Eungwanichayapant Zuo-Yi Liu Kevin d.Hyde Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouPeople’s Republic of China Centre of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo 31st West Beichen RoadChaoyang DistrictBeijing 100101People’s Republic of China Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal Academy of Biology and Biotechnology Southern Federal UniversityRostov-on-Don344090 Rostov RegionRussia Formerly department of Botany Goa UniversityGoaIndia Curca No.128/1–JAzad Housing SocietyGoa VelhaIndia A.M.B.Gruppo Micologico ForliveseBAntonio Cicognani^ Via Roma 18ForlìItaly A.M.B.Circolo Micologico BGiovanni Carini^ C.P.314BresciaItaly department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box:2455Riyadh 1145Saudi Arabia

Tamarix species are small trees that grow in various natural habitats and have a wide geographic *** species previously found on Tamarix and recently collected in Italy and Russia were identified based on morphological characters and analyses of gene sequence *** sexual morph of the coelomycetous genus Homortomyces was collected for the first time and is described and illustrated.A new family,Homortomycetaceae(dothideomycetes,families incertae sedis)is introduced to accommodate *** new genera Neomicrosphaeropsis(didymellaceae)and Tamaricicola(Pleosporaceae)are introduced in this *** tamaricicola was recollected and is placed in Neomicrosphaeropsis based on morphology and molecular *** new species,Cytospora italica,***,diaporthe ravennica,Eutypella tamaricis,Neomicrosphaeropsis italica,***,***,Keissleriella tamaricicola,Paracamarosporium tamaricis and Tamaricicola muriformis are introduced,while Alternaria tenuissima,dothiorella sarmentorum,Neofusicoccum luteum,Paraepicoccum amazonense,Pleospora herbarum and Pseudocamarosporium propinquum are reported for the first time on Tamarix *** descriptions and ***-gene analyses show that Paraepicoccum amazonense should be placed in Pleosporineae,Pleosporales,where it is closely related to Camarosporium sensu *** herbarium specimens were studied to illustrate other fungal species recorded on Tamarix species.A comprehensive account of microfungi on Tamarix is provided,which includes a list with data from the literature,as well as those identified in the present *** taxonomic placement of most taxa discussed in this study is based on a modern taxonomic framework based on analysis of multi-gene sequence data.

关键词： dothideomycetes Homortomycetaceae Incertae sedis New species Phylogeny Pleosporales Sordariomycetes Tamaricaceae Taxonomy

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Anthostomella is polyphyletic comprising several genera in Xylariaceae

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Fungal diversity 2015年第4期73卷 203-238页

作者： dinushani A.daranagama Erio Camporesi Qing Tian Xingzhong Liu Sunita Chamyuang Marc Stadler Kevin d.Hyde State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo 31st West Beichen RoadChaoyang District Beijing 100101People’s Republic of China Institute of Excellence in Fungal Research and School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand College of Science Botany and Microbiology DepartmentKing Saud UniversityRiyadh 1145Saudi Arabia Helmholtz-Zentrum für Infektionsforschung GmbH Department of Microbial DrugsInhoffenstrasse 738124 BraunschweigGermany A.M.B.Gruppo Micologico Forlivese "Antonio Cicognani" Via Roma 18ForlìItaly A.M.B.Circolo Micologico "Giovanni Carini" C.P.314 BresciaItaly Societàper gli Studi Naturalistici della Romagna C.P.144 BagnacavalloRAItaly

Anthostomella has long been regarded as a large,but polyphyletic genus in the family Xylariaceae,but species in this group generally lack phylogenetic *** this study,14 anthostomella-like taxa collected from Italy,were studied using both morphology and molecular *** ascospore isolates were obtained and the asexual morphs of five taxa *** phylogenetic relationships of the xylariaceous taxa were inferred using combined ITS,RPB2,βtubulin and LSU gene *** introduce new sequence data for 24 with included the 14 new anthostomella-like *** subfamilies Hypoxyloideae and Xylarioideae within Xylariaceae were recognized as the two major clades with high bootstrap *** the two clades 21 subclades were resolved and the anthostomella-like taxa clustered in five of these subclades indicating that the genus is *** sensu stricto comprised ***,***,***,*** and *** *** and *** collections morphologically closely resemble the type specimens and therefore we designate reference *** new species Anthostomella helicofissa,*** and *** are also *** distinct lineages of anthostomella-like taxa correspondent to four new genera,Anthocanalis,Brunneiperidium,Lunatiannulus and Pyriformiascoma,which are also introduced,while one clustered in Astrocystis and is introduced as a new *** to the new anthostomella-like genera and species examined in this study are provided.

关键词： Asexual morph Multigene phylogeny Taxonomy Xylariaceous taxa Xylariales

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Tubeufiales,***.,integrating sexual and asexual generic names

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Fungal diversity 2014年第5期68卷 239-298页

作者： Saranyaphat Boonmee Amy Y.Rossman Jian-Kui Liu Wen-Jing Li don-Qing dai Jayarama d.Bhat E.B.Gareth Jones Eric H.C.McKenzie Jian-Chu Xu Kevin d.Hyde Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina World Agro forestry Centre East and Central Asia Office 132 Lanhei RoadKunming 650201China Institute of Excellence in Fungal Research Mae Fah Luang UniversityMuangChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityMuangChiang Rai 57100Thailand Systematic Mycology and Microbiology Laboratory USDA-ARSBeltsvilleMD 20705USA Formerly at department of Botany Goa UniversityGoa 403206India department of Botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Landcare Research AucklandNew Zealand

Tubeufiaceae is based on the generic type Tubeufia,which is characterized by superficial,oval and bright ascomata,bitunicate asci,mostly long fusiform to filiform,transeptate ascospores and hyphomycetous asexual states with helicosporous *** species in this family are saprobic on terrestrial woody substrates and some are *** distinct morphology as well as combined LSU,SSU and TEF1 sequence analysis show that Tubeufiaceae should be accommodated in a new order Tubeufiales,which is introduced in this *** analyses of combined LSU and ITS sequences were used to resolve genera and species within the family *** this study,we examine and incorporate sexual and asexual states of genera in Tubeufiales to provide a modern treatment,based on single *** epitype for Tubeufia javanica,the type species of Tubeufia,is designated and represents Tubeufia sensu *** genera Acanthophiobolus,Acanthostigma,Boerlagiomyces,Chlamydotubeufia,Kamalomyces,Podonectria,Thaxteriella and Thaxteriellopsis are accepted,Acanthostigmina is reinstated,and the asexual genera Aquaphila,Helicoma,Helicomyces,Helicosporium and Tamhinispora are accepted in *** new genera Acanthohelicospora,Helicangiospora and Neoacanthostigma are *** genus Bifrontia is added to the family based on morphological *** incongruous morphological genera Acanthostigmella,Amphinectria,Chaetocrea,Chaetosphaerulina,Glaxoa,Malacaria,Melioliphila,Paranectriella,Puttemansia,Rebentischia and Uredinophila are excluded from Tubeufiaceae despite having characteristic ascomata with setae and multiseptate long spores.A key to genera accepted in Tubeufiaceae is provided.

关键词： dothideomycetes Helicospores New genus Phylogeny Taxonomy Tubeufiaceae

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