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Towards standardizing taxonomic ranks using divergence times-a case study for reconstruction of the Agaricus taxonomic system

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Fungal diversity 2016年第3期78卷 239-292页

作者： Rui-Lin Zhao Jun-Liang Zhou Jie Chen Simona Margaritescu Santiago Sánchez-Ramírez Kevin d Hyde Philippe Callac Luis A.Parra Guo-Jie Li Jean-Marc Moncalvo State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101China Institute of Microbiology and Beijing Key Laboratory for Forest Pest Control Beijing Forestry UniversityBeijing 100083China Center of Excellence in Fungal Research Mae Fah LuangUniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand department of Natural History Royal Ontario MuseumTorontoON M5S 2C6Canada department of Ecology and Evolutionary Biology University of TorontoTorontoON M5S 3B2Canada Key Laboratory of Economic Plants and Biotechnology Kunming Institute of BotanyChinese Academy of Sciences132 Lanhei RoadKunming 650201China INRA-UR1264 Mycologie et Sécuritédes AlimentsCS 2003233882 Villenave d’Ornon cedexFrance Avda.Padre Claret n°7 5°G09400 Aranda de DueroBurgosSpain

The recognition of taxonomic ranks in the Linnean classification system is largely *** authors have proposed the use of divergence time as a universally standardized ***(Agaricaceae,Agaricales)is a mushroom genus that contains many species of high commercial *** studies using ITS sequence data discovered 11 new phylogenetic lineages within the genus,however their taxonomic ranks were uncertain due to the lack of criteria to define them within traditional *** this study,we analyzed ITS sequence data from 745 collections(nearly 600 being newly generated)including 86 from type specimens of previously recognized subgenera and *** monophyletic groups were recognized,but most basal relationships were *** hundred and fourteen representatives of the identified ITS clades were selected in order to produce a multi-gene phylogeny based on combined LSU,tef-1α,and rpb2 sequence *** times within the multi-gene phylogeny were estimated using BEAST *** on phylogenetic relationships and with respect to morphology,we propose a revised taxonomic system for Agaricus that considers divergence time as a standardized criterion for establishing taxonomic *** propose to segregate Agaricus into five subgenera and 20 *** Pseudochitonia is substantially emended;circumscription of the subgenera Agaricus and Flavoagaricus is restricted to taxa of sections Agaricus and Arvenses,respectively;and two new subgenera(Minores and Spissicaules)are *** Pseudochitonia,sections Bivelares,Brunneopicti,Chitonioides,Nigrobrunnescentes,Sanguinolenti and Xanthodermatei are maintained,but the latter two are reduced because we raise subsection Bohusia to sectional rank and a clade within section Xanthodermatei is formally introduced as section Hondenses;and sections Rubricosi,Crassispori,Flocculenti,and Amoeni are *** Laeticolores is placed in the subgenus Minores and sections Rarolen

关键词： Agaricaceae divergence times Multi-gene phylogenetics Systematics Taxonomy

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Can we use environmental dNA as holotypes?

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Fungal diversity 2018年第5期92卷 1-30页

作者： Sinang Hongsanan Rajesh Jeewon Witoon Purahong Ning Xie Jian-Kui Liu Ruvishika S.Jayawardena Anusha H.Ekanayaka Asha dissanayake Olivier Raspe Kevin d.Hyde Marc Stadler derek Persoh Shenzhen Key Laboratory of Microbial Genetic Engineering College of Life Sciences and OceanographyShenzhen UniversityShenzhen 518060People’s Republic of China Shenzhen Key Laboratory of Laser Engineering College of Optoelectronic EngineeringShenzhen UniversityShenzhen 518060People’s Republic of China department of Health Sciences Faculty of ScienceUniversity of MauritiusReduit 80837Mauritius UFZ-Helmholtz Centre for Environmental Research Department of Soil EcologyTheodor-Lieser-Str.406120 Halle(Saale)Germany Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyangGuizhou 550006People’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Botanic Garden Meise Nieuwelaan 381860 MeiseBelgium Fédération Wallonie–Bruxelles Service général de l’Enseignement universitaire et de la Recherche scientifiqueRue Adolphe Lavallée 11080 BrusselsBelgium department of Microbial drugs Helmholtz-Zentrum für Infektionsforschung GmbHInhoffenstrasse 738124 BraunschweigGermany Ruhr-Universität Bochum GeobotanyUniversitätstrasse 15044801 BochumGermany

The advantages and disadvantages of giving a valid name to a sequence of dNA detected from environmental specimens is presently a hot debate amongst the mycological *** idea of using intracellular dNA("mgdNA")from environmental samples as holotypes seems at face value,to be a good idea,considering the expansion of knowledge among these‘dark taxa’or‘dark matter fungi’that it could provide(*** based taxa without physical specimens and formal nomenclature).However,the limitations of using mgdNA as holotypes needs careful thought,*** we use a short mgdNA fragment,which may contain a small amount of genetic information,to allow discrimination between species?What is the point and are the potential problems of giving valid scientific names to mgdNA?Numerous mycologists and taxonomists,who have many years of experience working on the taxonomy and phylogeny of different groups of fungi,are concerned about the consequences of providing valid names to *** has been much debate,through several publications on the considerable problems of using mgdNA as *** proponents have tried to debate the virtues of using mgdNA as *** against have shown that identification to species using mgdNA does not work in many fungal groups,while those for have shown cases where species can be identified with *** disciplines have different reasons and opinions for using mgdNA as holotypes,however even groups of the same disciplines have dissimilar *** this paper we explore the use of mgdNA as *** provide evidences and opinions as to the use of mgdNA as holotypes from our own *** no way do we attempt to degrade the study of dNA from environmental samples and the expansion of knowledge in to the dark taxa,but relate the issues to fungal *** fact we show the value of using sequence data from these approaches,in dealing with the discovery of already named taxa,taxa numbers and ecological *** discuss the

关键词： dNA-based sequence Fungal identification ITS Next-generation sequencing Nomenclature Taxonomy

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A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex

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Fungal diversity 2012年第5期56卷 131-144页

作者： dimuthu S.Manamgoda Lei Cai Eric H.C.McKenzie Pedro W.Crous Hugo Madrid Ekachai Chukeatirote Roger G.Shivas Yu Pei Tan Kevin d.Hyde Institute of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100190People’s Republic of China Landcare Research Private Bag 92170AucklandNew Zealand CBS-KNAW Fungal Biodiversity Centre Uppsalalaan 83584 CT UtrechtNetherlands department of Agriculture Fisheries and ForestryPlant Pathology Herbarium(BRIP)Plant Biosecurity ScienceGPO Box 267BrisbaneQLD 4001Australia

Three genera,Cochliobolus,Bipolaris and Curvularia form a complex that contains many plant pathogens,mostly on grasses(Poaceae)with a worldwide *** taxonomy of this complex is confusing as frequent nomenclatural changes and refinements have *** is no clear morphological boundary between the asexual genera Bipolaris and Curvularia,and some species show intermediate *** investigated this complex based on a set of ex-type cultures and collections from northern *** gene analysis of rdNA ITS(internal transcribed spacer),GPdH(glyceraldehyde 3-phosphate dehydrogenase),LSU(large subunit)and EF1-α(translation elongation factor 1-α)shows that this generic complex divides into two *** and Cochliobolus species clustered in Group 1 along with their type species,whereas Curvularia species(including species named as Bipolaris,Cochliobolus and Curvularia)clustered in Group 2,with its generic *** nomenclatural conflict in this complex is resolved giving priority to the more commonly used established generic names Bipolaris and *** descriptions of the genera Bipolaris and Curvularia are provided and species resolved in this study are transferred to one of these genera based on their phylogeny.

关键词： Anamorph Generic complex Neotype Nomenclature Pathogens Pseudocochliobolus

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The sooty moulds

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Fungal diversity 2014年第3期66卷 1-36页

作者： Putarak Chomnunti Sinang Hongsanan Begoña Aguirre-Hudson Qing Tian derek Peršoh Manpreet K.dhami Aisyah S.Alias Jianchu Xu Xingzhong Liu Marc Stadler Kevin d.Hyde Key Laboratory for Plant Biodiversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina Institute of Excellence in Fungal Research and School of ScienceMae Fah Luang University333 M.1 ThasudMuangChiang Rai 57100Thailand Jodrell Laboratory Royal Botanic GardensKew RichmondSurrey TW93DSUK department of Mycology University of BayreuthUniversitätsstraße 3095440 BayreuthGermany Plant Health and Environment Laboratory Ministry for Primary IndustriesP O Box 2095Auckland 1140New Zealand Institute of Ocean and Earth Sciences(IOES) C308Institute of Postgraduate Studies BuildingUniversity of Malaya50603 Kuala LumpurMalaysia State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo3 Park 1Chaoyang DistrictBeijing 100101People’s Republic of China department Microbial drugs Helmholtz-Centre for Infection Research and Technical University of BraunschweigInhoffenstrasse 738124 BraunschweigGermany World Agroforestry Center East and Central AsiaKunming 650201YunnanChin

Sooty moulds are a remarkable,but poorly understood group of *** coat fruits and leaves superficially with black mycelia,which reduces photosynthesis rates of host *** researchers have,however,tried to quantify their economic *** moulds have been well-studied at the morphological level,but they are poorly represented in a natural classification based on *** are presently known in Antennulariellaceae,Capnodiaceae,Chaetothyriaceae,Coccodiniaceae,Euantennariaceae,Metacapnodiaceae and Trichomeriaceae and several miscellaneous ***,molecular data is available for only five *** sooty mould colonies comprise numerous species and thus it is hard to confirm relationships between genera or sexual and asexual *** studies need to obtain single spore isolates of species to test their phylogenetic affinities and linkages between *** generation sequencing has shown sooty mould colonies to contain many more fungal species than expected,but it is not clear which species are dominant or active in the *** are more common in tropical,subtropical and warm temperate regions and thus their prevalence in temperate regions is likely to increase with global *** moulds are rarely parasitized by fungicolous taxa and these may have biocontrol *** apparently grow in extreme environments and may be *** needs testing as xerophilic taxa may be of interest for industrial *** moulds grow on sugars and appear to out-compete typical“weed”fungi and *** may produce antibiotics for this purpose and their biochemical potential for obtaining novel bioactive compounds for medical application is underexplored.

关键词： Antibiotics Capnodiales Chaetothyriales Global warming Life cycle Phylogeny Xerophiles

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What are fungal species and how to delineate them?

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Fungal diversity 2021年第4期109卷 1-25页

作者： K.W.Thilini Chethana Ishara S.Manawasinghe V.G.Hurdeal Chitrabhanu S.Bhunjun M.A.Appadoo Eleni Gentekaki Olivier Raspé Itthayakorn Promputtha Kevin d.Hyde Innovative institute for plant health zhongkai university of agriculture and engineeringguangzhou 510225people’s republic of china center of excellence in fungal research mae fah luang universitychiang rai 57100thailand school of science mae fah luang universitychiang rai 57100thailand department of biology faculty of sciencechiang mai universitychiang mai 50200thailand

This is the opening paper in the special issue of Fungal diversity,which collates the data on defining *** and recognizing species has long been a controversial *** darwin’s proposed origin of species,over 30 species criteria have been brought forth and used to define species *** recent times,phylogenetic analyses based on multiple loci have been extensively used as a method to define species ***,only a few mycologists are aware that phylogenetic species criteria can mask discordances among fungal groups,leading to inaccurately defined species *** the current review,we discuss species recognition criteria,how and where these criteria can be applied along with their limitations and derived *** order to delimit fungal species,authors need to take into account not only the phylogenetic and phenotypic coherence,but also the timing of events that lead to fungal speciation and subsequent *** in the rate of phenotypic diversifications and convergent fungal evolution make it difficult to establish a universal species recognition *** best practice can only be defined in the context of each fungal *** this review,we provide a set of guidelines,encouraging an integrative taxonomic approach for species delimitation that can be used to define fungal species boundaries in the *** other papers in this special issue deal with fungal speciation in Ascomycota,dothideomycetes,Basidiomycota,basal fungi,lichen-forming fungi,plant pathogenic fungi,and yeasts.

关键词： Allopatry Speciation Species concepts Species criteria Species recognition Sympatry

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Towards a natural classification of Annulatascaceae-like taxa;introducing one new order and six new families

Towards a natural classification of Annulatascaceae-like tax...

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中国菌物学会2018年学术年会

作者： Huang Zhang Wei dong Kevin d.Hyde Yunnan Institute of Food Safety Kunming University of Science & Technology Center of Excellence for Fungal Research Mae Fah Luang University

Species that has black ascomata with long necks, unitunicate, cylindrical asci with apical rings and fusiform, hyaline ascospores with or without mucilaginous sheaths are common in freshwater habitats in tropical and temperate areas（Shearer and Raja 2010）. Many of these taxa have originally been recorded as Annulatascaceae-like taxa. Twenty genera have been included in Annulatascaceae mostly by morphological characters, but molecular work and phylogenetic analyses are generally lacking（Maharachchikumbura et al.2016）. In this study, nine new Annulatascaceae-like taxa collected from Thailand were morphologically *** new strains and other known strains of Sordariomycetes species were used to establish a phylogenetic tree and evolution tree based on combined LSU, SSU, ITS and RPB2 sequence data. Phylogenetic analyses show that one new order Atractosporales and six new families are introduced to accommodate taxa excluded from Annulatascaceae sensu stricto. The new order Atractosporales includes three newly built families Conlariaceae,Pseudoproboscisporaceae and Atractosporaceae. Conlariaceae is introduced for genus Conlaria which comprises two species, Conlaria duplumascospora and a new coelomycetous asexual morph taxon Conlarium aquaticum which shows subglobose or irregular, brown, clathrate, muriform conidia. Pseudoproboscisporaceae includes Pseudoproboscispora and diluviicola, while Atractosporaceae includes the genera Rubellisphaeria and Atractospora. Three genera Barbatosphaeria, Xylomelasma and Ceratostomella form a stable clade which is introduced as a new family Barbatosphaeriaceae in diaportheomycetidae, families incertae sedis. A new family Lentomitellaceae is introduced in diaportheomycetidae, families incertae sedis, to accommodate the genus Lentomitella. Woswasiaceae is introduced to accommodate Woswasia, Xylochrysis and Cyanoannulus in diaportheomycetidae, families incertae sedis. Three new species of Fluminicola are introduced. A new sexual morph

关键词： diaportheomycetidae Phylogeny Ring Sexual states Submerged wood

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Families of Sordariomycetes

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Fungal diversity 2016年第4期79卷 1-317页

作者： Sajeewa S.N.Maharachchikumbura Kevin d.Hyde E.B.Gareth Jones E.H.C.McKenzie Jayarama d.Bhat Monika C.dayarathne Shi-Ke Huang Chada Norphanphoun Indunil C.Senanayake Rekhani H.Perera Qiu-Ju Shang Yuanpin Xiao Melvina J.d’souza Sinang Hongsanan Ruvishika S.Jayawardena dinushani A.daranagama Sirinapa Konta Ishani d.Goonasekara Wen-Ying Zhuang Rajesh Jeewon Alan J.L.Phillips Mohamed A.Abdel-Wahab Abdullah M.Al-Sadi Ali H.Bahkali Saranyaphat Boonmee Nattawut Boonyuen Ratchadawan Cheewangkoon Asha J.dissanayake Jichuan Kang Qi-Rui Li Jian Kui Liu Xing Zhong Liu Zuo-Yi Liu JJennifer Luangsa-ard Ka-Lai Pang Rungtiwa Phookamsak Itthayakorn Promputtha Satinee Suetrong Marc Stadler Tingchi Wen Nalin N.Wijayawardene Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Center of Excellence in Fungal Research and School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand department of Crop Sciences College of Agricultural and Marine SciencesSultan Qaboos UniversityP.O.Box 34Al-Khod 123Oman department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha403108 GoaIndia department of Botany Goa UniversityGoa 403206India Engineering Research Center of Southwest Bio-Pharmaceutical Resources Ministry of EducationGuizhou UniversityGuiyang 550025Guizhou ProvinceChina Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo 9 of ShuGuangHuaYuanZhangLuHaidian District Beijing 100097China State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101China department of Health Sciences Faculty of ScienceUniversity of MauritiusReduitMauritius Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal department of Botany Faculty of ScienceSohag UniversitySohagEgypt Fungal Biodiversity Laboratory BIOTECNational Science and Technology Development Agency(NSTDA)113 Thailand Science ParkThanon PhahonyothinTombon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand department of Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand department of Pharmacy Guiyang Medical UniversityGuiyangGuizhou 550025China Microbe Interaction Laboratory BIOTECNational Science and Technology Development Agency(NSTDA)113 Thailand Science ParkThanon PhahonyothinTombon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand Institute of Marine Biology and Center of Excell

Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate *** class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,coprophilous and fungicolous,lichenized or lichenicolous *** occur in terrestrial,freshwater and marine habitats *** paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci,with a maximum five representative taxa from each family,where *** paper brings together for the first time,since Barrs’1990 Prodromus,descriptions,notes on the history,and plates or illustrations of type or representative taxa of each family,a list of accepted genera,including asexual genera and a key to these taxa of *** of taxa is supported where possible by molecular *** outline is based on literature to the end of 2015 and the Sordariomycetes now comprises six subclasses,32 orders,105 families and 1331 *** family Obryzaceae and Pleurotremataceae are excluded from the class.

关键词： Amplistromatales Annulatascales Boliniales Calosphaeriales Chaetosphaeriales Coniochaetales Conioscyphales Cordanales Coronophorales diaporthales Falcocladiales Glomerellales Hypocreales Jobellisiales Koralionastetales Lulworthiales Magnaporthales Melanosporales Meliolales Microascales Ophiostomatales Phylogeny Phyllachorales Pisorisporiales Pleurotheciales Sordariales Savoryellales Tirisporellales Togniniales Torpedosporales Trichosphaeriales Taxonomy Trichosphaeriales Type species Xylariales

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divergence time calibrations for ancient lineages of Ascomycota classification based on a modern review of estimations

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Fungal diversity 2019年第3期96卷 285-346页

作者： Milan C.Samarakoon Kevin d.Hyde Sinang Hongsanan Eric H.C.McKenzie Hiran A.Ariyawansa Itthayakorn Promputtha Xiang-Yu Zeng Qing Tian Jian-Kui(Jack)Liu Center for Informational Biology School of Life Science and TechnologyUniversity of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Key Laboratory for Plant diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China Shenzhen Key Laboratory of Microbial Genetic Engineering College of Life Sciences and OceanographyShenzhen UniversityShenzhenPeople’s Republic of China Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand department of Plant Pathology and Microbiology College of Bio-Resources and AgricultureNational Taiwan UniversityNo.1Sec.4Roosevelt RoadTaipei 106TaiwanROC Environmental Science Research Center Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand

Inaccurate taxonomic placement of fossils can lead to the accumulation of errors in molecular clock studies and their generated evolutionary *** are limited fossil data that can be used in divergence time ***,reliable morphological characterization and taxonomical identification of fossil fungi are extremely *** fossils of dothideomycetes and Sordariomycetes are from the early Cenozoic(66-23 Mya),with fewer from the late Mesozoic(174-145 Mya).However,it is hard to distinguish some fossil descriptions as photographs and illustrations are unclear;thus,the validity of using these fossils in calibrations of molecular clocks is *** study brings scattered paleobiological data on selected fossil Ascomycota,using descriptions,fossil images and illustrations,coupled with recent age estimations,and taxonomic and phylogenetic affinity of extant *** an integrated approach,this study summarizes a historical fossil outline with a reliable minimum age for 16 calibrating points *** of Aigialus,Anzia,Aspergillus,Asterina,Calicium chlorosporum–***,Capnodiales,Chaenotheca,Colletotrichum,diaporthales,Meliola,Ophiocordyceps,Microthyriales,Microthyrium,Muyocopron,Pezizomycotina and Stigmatomyces.A scheme of Ascomycota ancient lineages is also provided in order to improve divergence time estimations.

关键词： Fossil fungi Morphological characterization Phylogeny Taxonomy Two new combinations

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Taxonomy,phylogeny,molecular dating and ancestral state reconstruction of Xylariomycetidae(Sordariomycetes)

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Fungal diversity 2022年第1期112卷 1-88页

作者： Milan C.Samarakoon Kevin d.Hyde Sajeewa S.N.Maharachchikumbura Marc Stadler E.B.Gareth Jones Itthayakorn Promputtha Nakarin Suwannarach Erio Camporesi Timur S.Bulgakov Jian-Kui Liu School of Life Science and Technology Center for Informational BiologyUniversity of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Research Center in Bioresources for Agriculture Industry and MedicineChiang Mai UniversityChiang Mai 50200Thailand department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Institute of Microbiology Technische Universität BraunschweigSpielmannstraße 738106 BrunswickGermany department of Botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi Arabia Research Center of Microbial diversity and Sustainable Utilization Chiang Mai UniversityChiang Mai 50200Thailand A.M.B.Gruppo Micologico Forlivese"Antonio Cicognani"Via Roma 18ForliItaly department of Plant Protection Federal Research Centre the Subtropical Scientific Centre of the Russian Academy of SciencesYana Fabritsiusa Street 2/28SochiKrasnodar RegionRussia 354002

Xylariomycetidae(Ascomycota)is a highly diversified group with variable stromatic *** research focused on inconspicuous stromatic xylarialean taxa from China,Italy,Russia,Thailand and the United *** morpho-logical descriptions,illustrations and combined ITS-LSU-rpb2-tub2-tef1 phylogenies revealed 39 taxa from our collections belonging to Amphisphaeriales and Xylariales.A new family(Appendicosporaceae),five new genera(Magnostiolata,Mela-nostictus,Neoamphisphaeria,Nigropunctata and Paravamsapriya),27 new species(Acrocordiella photiniicola,Allocryp-tovalsa sichuanensis,Amphisphaeria parvispora,Anthostomella lamiacearum,Apiospora guiyangensis,***,Biscogniauxia magna,Eutypa camelliae,Helicogermslita clypeata,Hypocopra zeae,Magnostiolata mucida,Melanostictus longiostiolatus,***,Nemania longipedicellata,***,***,***,Neoamphispha-eria hyalinospora,Neoanthostomella bambusicola,Nigropunctata bambusicola,***,***,Occul-titheca rosae,Paravamsapriya ostiolata,Peroneutypa leucaenae,Seiridium italicum and Vamsapriya mucosa)and seven new host/geographical records are introduced and *** time estimates indicate that delonicicolales diverged from Amphisphaeriales+Xylariales at 161(123-197)*** and Xylariales diverged 154(117-190)MYA with a crown age of 127(92-165)MYA and 147(111-184)MYA,***(Amphisphaeriales)has a stem age of 89(65-117)*** character state reconstruction indicates that astromatic,clypeate ascomata with aseptate,hyaline ascospores that lack germ slits may probably be ancestral Xylariomycetidae having plant-fungal endo-phytic *** Amphisphaeriales remained mostly astromatic with common septate,hyaline *** variations may have developed mostly during the Cretaceous *** ascospores are common in Xylariales,but they first appeared in Amphisphaeriaceae,Melogrammataceae and Sp

关键词： 33 new taxa Amphisphaeriales Appendicosporaceae Evolution Stromata Xylariales

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Freshwater fungi from karst landscapes in China and Thailand

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Fungal diversity 2023年第2期119卷 1-212页

作者： Jing Yang Ling-Ling Liu EBGareth Jones Kevin d.Hyde Zuo-Yi Liu dan-Feng Bao Ning-Guo Liu Wen-Li Li Hong-Wei Shen Xian-dong Yu Jian-Kui Liu School of Life Science and Technology Center for Informational BiologyUniversity of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China School of Science Center of Excellence in Fungal ResearchMae Fah Luang UniversityChiang Rai 57100Thailand Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China Guizhou Institute of Soil and Fertilizer Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China department of Botany and Microbiology College of ScienceKing Saud UniversityRiyadh 11451Saudi Arabia department of Entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Faculty of Agriculture Natural Resources and EnvironmentNaresuan UniversityPhitsanulok 65000Thailand

Freshwater fungi comprises a highly diverse group of organisms occurring in freshwater habitats throughout the ***-ing a survey of freshwater fungi on submerged wood in streams and lakes,a wide range of sexual and asexual species were collected mainly from karst regions in China and *** inferences using partial gene regions of LSU,ITS,SSU,TEF1α,and RPB2 sequences revealed that most of these fungi belonged to dothideomycetes and Sordariomycetes and a few were related to *** on the morphology and multi-gene phylogeny,we introduce four new genera,***,Neocirrenalia,Ocellisimilis and Uvarisporella,and 47 new species,*** chishuiensis,***,***,Actinocladium aquaticum,Annulatascus tratensis,Aquabispora setosa,Aqualignicola setosa,Aquimassario-sphaeria vermiformis,Ceratosphaeria flava,Chaetosphaeria polygonalis,Conlarium muriforme,digitodesmium chishuiense,Ellisembia aquirostrata,Fuscosporella atrobrunnea,Halobyssothecium aquifusiforme,***,Hongkongmyces aquisetosus,Kirschsteiniothelia dushanensis,Monilochaetes alsophilae,Mycoenterolobium macrosporum,Myrmecridium splendidum,Neohelicascus griseoflavus,Neohelicomyces denticulatus,Neohelicosporium fluviatile,Neokalmusia aquib-runnea,Neomassariosphaeria aquimucosa,Neomyrmecridium naviculare,Neospadicoides biseptata,Ocellisimilis clavata,Ophioceras thailandense,Paragaeumannomyces aquaticus,Phialoturbella aquilunata,Pleurohelicosporium hyalinum,Pseudodactylaria denticulata,***,***,Pseudohalonectria aurantiaca,Rhamphoriopsis aquimi-crospora,Setoseptoria bambusae,Shrungabeeja fluviatilis,Sporidesmium tratense,***,Sporoschisma atroviride,Stanjehughesia aquatica,Thysanorea amniculi,Uvarisporella aquatica and Xylolentia aseptata,with an illustrated account,discussion of their taxonomic placement and comparison with morphological similar *** new combinations are introduced,*** grandispora(≡Boerlagiomyc

关键词： 58 new taxa Asexual morph Multi-gene Phylogeny Sexual morph Taxonomy

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