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Free Energy Change of Micelle Formation for Sodium Dodecyl Sulfate from a Dispersed State in Solution to Complete Micelles along Its Aggregation Pathways Evaluated by Chemical Species Model Combined with Molecular Dynamics Calculations

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物理化学学报 2018年第10期34卷 1163-1170页

作者： YOSHII Noriyuki KOMORI Mika KAWADA Shinji TAKABAYASHI Hiroaki fujimoto kazushi OKAZAKI Susumu Center for Computational Science Graduate School of EngineeringNagoya UniversityNagoya 464-8603Japan Department of Applied Chemistry Nagoya UniversityNagoya 464-8603Japan

Surfactant molecules, when dispersed in solution, have been shown to spontaneously form aggregates. Our previous studies on molecular dynamics(MD) calculations have shown that ionic sodium dodecyl sulfate molecules quickly aggregated even when the aggregation number is small. The aggregation rate, however, decreased for larger aggregation numbers. In addition, studies have shown that micelle formation was not completed even after a 100 ns-long MD run(Chem. Phys. Lett. 2016, 646, 36). Herein, we analyze the free energy change of micelle formation based on chemical species model combined with molecular dynamics calculations. First, the free energy landscape of the aggregation, ?G_(i+j)^+, where two aggregates with sizes i and j associate to form the(i + j)-mer, was investigated using the free energy of micelle formation of the i-mer, G_i^+, which was obtained through MD calculations. The calculated ?G_(i+j)^+ was negative for all the aggregations where the sum of DS ions in the two aggregates was 60 or less. From the viewpoint of chemical equilibrium, aggregation to the stable micelle is desired. Further, the free energy profile along possible aggregation pathways was investigated, starting from small aggregates and ending with the complete thermodynamically stable micelles in solution. The free energy profiles, G(l, k), of the aggregates at l-th aggregation path and k-th state were evaluated by the formation free energy ∑_in_i( l,k)G_i^+ and the free energy of mixing ∑_in_i( l,k)k_BTln( n_i( l,k)/n( l,k)), where ni(l, k) is the number of i-mer in the system at the l-th i aggregation path and k-th state, with n(l,k)= ∑_n_i( l,k). All the aggregation pathways were obtained from the initial i state of 12 pentamers to the stable micelle with i = 60. All the calculated G(l, k) values monotonically decreased with increasing k. This indicates that there are no free energy barriers along the pathways. Hence, the slowdown is not due to the thermodynamic stability of the aggre

关键词： Free energy change Aggregation pathway SDS Micelle Molecular dynamics calculation

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ULTRASTRUCTURAL CYTOCHEMISTRY OF THE CARDIAC GAP JUNCTION

ULTRASTRUCTURAL CYTOCHEMISTRY OF THE CARDIAC GAP JUNCTION

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The Second Chinese-Japanese Electron Microscopy Seminar

作者： Kazuo Ogawa kazushi fujimoto kazushige Ogawa Department of Anatomy Faculty of MedicineKyoto UniversityKyoto 606Japan Department of Anatomy Faculty of MedicineKyoto UniversityKyoto 606Japan Department of Anatomy Faculty of MedicineKyoto UniversityKyoto 606Japan

＜正＞Introduction The structure and function of the gap junction（GJ）has become a modern,cell biological problem of extreme interest in view of physiological studies suggesting that it mediates an intercellular comm...

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Altered expression of gap junctions, desmosomes and adherens junctions in ischemic rat heart

Altered expression of gap junctions, desmosomes and adherens...

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Third Congress of the Asian-Pacific Organization for Cell Biology

作者： Tsutomu Matsushita Masahito Oyamada Shinsuke Masuda Keiichi Yokoyama kazushi fujimoto Yuko Yasuda Setsuya Fujita Tetsuro Takamatsu Dept. of Path.and Cell Regul. Kyoto Pref. Univ. Med.Kamikyo-kuKyoto-shiKyoto 602 Japan Dept. of Anat. Kyoto Univ.Sakyo-kuKyoto-shiKyoto 606Japan L. Pasteur Ctr. Med. Res. Sakyo-kuKyoto-shiKyoto 606Japan

Altered distribution of gap junctions in ischemic hearts has been recognized as an important factor in arrhythmogenesis. Gap junctional intercellular communication is influenced by other cell junctions. To investigate

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