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异养微生物在金属生物淋滤技术中的应用

生态学杂志 2007年第11期26卷 1835-1841页

作者：任婉侠李培军何娜范淑秀 e.v.verkhozina 中国科学院沈阳应用生态研究所俄罗斯学院西伯利亚分院地质研究所伊尔库茨克664033

生物淋滤技术主要应用于低品位矿石金属选矿、煤气脱硫、废弃物中金属回收和污染介质中金属离子毒性的去除等方面。作为生物淋滤技术中的主体微生物之一,异养微生物可通过其产生的酸性代谢物还原、酸化及络合,提取或者溶解非硫化矿、固... 详细信息

生物淋滤技术主要应用于低品位矿石金属选矿、煤气脱硫、废弃物中金属回收和污染介质中金属离子毒性的去除等方面。作为生物淋滤技术中的主体微生物之一,异养微生物可通过其产生的酸性代谢物还原、酸化及络合,提取或者溶解非硫化矿、固体废弃物、污水污泥及土壤中的金属,有助于解决目前的资源短缺问题,还可对污染环境治理提供技术支持,具有重要的理论意义和实践价值。应用于异养微生物淋滤技术中的常见微生物包括细菌(以假单胞菌为主)和真菌(以曲霉菌和青霉菌应用最为广泛)。淋滤过程涉及酸解、络合、还原及碱化等。目前,异养微生物淋滤技术主要应用于生物冶金、固体废弃物处理、污水处理和污染土壤修复等。本文分析了异养微生物金属淋滤过程中的问题,并提出了未来研究的发展方向。

关键词：异养微生物生物淋滤修复技术污染介质金属

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共基质对10株细菌降解苯并芘的作用研究

农业环境科学学报 2007年第1期26卷 290-294页

作者：苏丹李培军台培东 e.v.verkhozina 中国科学院沈阳应用生态研究所俄罗斯科学院西伯利亚分院地壳研究所

从石油污染的污泥中分离驯化出10株细菌(SB01～SB10),利用生物摇床实验对其降解苯并芘(BaP)的效能进行试验,研究了有(或无)共基质(葡萄糖Glu,或菲PHe)对细菌降解BaP的影响,并采用ANOvA和Tukey多重比较进行分析。结果表明(,1)当以BaP为... 详细信息

从石油污染的污泥中分离驯化出10株细菌(SB01～SB10),利用生物摇床实验对其降解苯并芘(BaP)的效能进行试验,研究了有(或无)共基质(葡萄糖Glu,或菲PHe)对细菌降解BaP的影响,并采用ANOvA和Tukey多重比较进行分析。结果表明(,1)当以BaP为惟一碳源和能源且BaP初始浓度为50mg·L-1时(MS1),SB01的降解率最高,5d可降解31.0%;以Glu为共代谢基质时(MS2),SB09的降解率最高,可达36.9%;以PHe为共代谢基质时(MS3),SB01对BaP的降解率为46.0%。(2)Glu对SB01、SB02、SB03、SB07、SB10降解BaP有抑制作用,对SB01抑制作用最明显,使SB01的降解率降低了13.1%,Glu对SB05,SB08降解率无明显促进或抑制作用。(3)PHe对细菌降解BaP均表现出促进作用,对SB01的促进作用最明显,使其降解率提高15.0%。(4)Glu对SB09的促进作用大于PHe的促进作用,而对SB06,PHe的促进作用大于Glu。

关键词： PAHs 细菌生物降解苯并芘葡萄糖菲共基质

土壤中嗜酸性氧化亚铁硫杆菌的分离鉴定及其性能研究

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农业环境科学学报 2008年第2期27卷 602-607页

作者：任婉侠李培军何娜范淑秀 e.v.verkhozina 中国科学院沈阳应用生态研究所俄罗斯学院西伯利亚分院地质研究所伊尔库茨克664033

采用改进型Leathen培养基直接从辽宁省抚顺市红透山铜矿附近的土壤中分离到了一株高度嗜酸的氧化亚铁硫杆菌(Acidithiobacillus ferrooxidans)菌株(暂命名为R2)。鉴定表明,该菌株为革兰氏阴性细菌,在扫描电镜下观察该菌株为短杆状,菌体... 详细信息

采用改进型Leathen培养基直接从辽宁省抚顺市红透山铜矿附近的土壤中分离到了一株高度嗜酸的氧化亚铁硫杆菌(Acidithiobacillus ferrooxidans)菌株(暂命名为R2)。鉴定表明,该菌株为革兰氏阴性细菌,在扫描电镜下观察该菌株为短杆状,菌体大小为(0.4±0.2)μm×(1.6±0.4)μm。最适pH值2.0,化能自养型,能利用亚铁、单质硫和硫代硫酸钠生长,不能利用葡萄糖、蛋白胨生长。并且以16S rDNA序列同源性为基础构建了17株已报道菌种在内的系统发育树,将16S rDNA测序结果输入Genebank以Blast软件进行序列同源性比较,结果显示与氧化亚铁硫杆菌(Acidithiobacillus ferrooxidans)的多株细菌具有较高的同源性(>99%),其中与Acidithiobacillus ferrooxidans strain TGS的相似性达到100%,与标准株Acidithiobacillus ferrooxidans strain ATCC33020相似性为99.3%,结合其生理生化特性可以确定该菌为氧化亚铁硫杆菌种。序批式试验法研究表明,接种该株菌可有效溶出土壤中重金属,经过5d的生物淋滤,Cu、Cr、Zn、Cd的最高去除率分别达到30.6%、16.3%、58.4%和72%。

关键词：土壤重金属嗜酸性氧化亚铁硫杆菌生物淋滤系统发育树 16S rDNA

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潜流人工湿地不同基质除磷研究

沈阳建筑大学学报（自然科学版） 2006年第6期22卷 985-988页

作者：尹炜李培军傅金祥巩宗强张海荣 e.v.维尔霍金娜中国科学院沈阳应用生态研究所俄罗斯科学院西伯利亚分院地质研究所伊尔库茨克664033

目的考察实验材料的磷吸附容量，优选1～2种除磷性能良好的湿地基质材料．方法分析材料的理化特性，通过吸附等温曲线实验和吸附动力学实验比较材料的除磷容量，并对除磷容量与其本身的理化特性进行相关性比较．结果当接触液初始质量浓... 详细信息

目的考察实验材料的磷吸附容量，优选1～2种除磷性能良好的湿地基质材料．方法分析材料的理化特性，通过吸附等温曲线实验和吸附动力学实验比较材料的除磷容量，并对除磷容量与其本身的理化特性进行相关性比较．结果当接触液初始质量浓度为320mg／L时，试验材料对磷的吸附量为石灰石〉硅灰石〉沸石〉陶粒〉沙子；在pH为6．60～7．69时，决定基质材料磷吸附容量最关键的因素是材料钙和铝的含量．接触液磷质量浓度不同对不同材料的吸磷量影响显著．不同材料基质的磷吸附平衡时间和吸附速率都存在着差异，对磷的吸附速率与材料对磷的吸附容量没有直接的相关性．结论石灰石和硅灰石是较好的潜流人工湿地除磷基质，可以与普通沙子混合级配，陶粒如果在制造过程中添加一些钙化合物也将成为一种合适的人工湿地基质材料．

关键词：潜流人工湿地基质磷磷的吸附容量

Semantic Segmentation of Lumbar vertebrae Using Meijering U-Net(MU-Net)on Spine Magnetic Resonance Images

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Computer Modeling in engineering & Sciences 2025年第1期142卷 733-757页

作者： Lakshmi S v v Shiloah elizabeth Darmanayagam Sunil Retmin Raj Cyril Department of Computer Science and engineering College of Engineering GuindyAnna UniversityChennai600025India Department of Information Technology Madras Institute of TechnologyAnna UniversityChrompetChennai600044India

Lower back pain is one of the most common medical problems in the world and it is experienced by a huge percentage of people *** to its ability to produce a detailed view of the soft tissues,including the spinal cord,nerves,intervertebral discs,and vertebrae,Magnetic Resonance Imaging is thought to be the most effective method for imaging the *** semantic segmentation of vertebrae plays a major role in the diagnostic process of lumbar *** is difficult to semantically partition the vertebrae in Magnetic Resonance Images from the surrounding variety of tissues,including muscles,ligaments,and intervertebral discs.U-Net is a powerful deep-learning architecture to handle the challenges of medical image analysis tasks and achieves high segmentation *** work proposes a modified U-Net architecture namely MU-Net,consisting of the Meijering convolutional layer that incorporates the Meijering filter to perform the semantic segmentation of lumbar vertebrae L1 to L5 and sacral vertebra ***-colour mask images were generated and used as ground truth for training the *** work has been carried out on 1312 images expanded from T1-weighted mid-sagittal MRI images of 515 patients in the Lumbar Spine MRI Dataset publicly available from Mendeley *** proposed MU-Net model for the semantic segmentation of the lumbar vertebrae gives better performance with 98.79%of pixel accuracy(PA),98.66%of dice similarity coefficient(DSC),97.36%of Jaccard coefficient,and 92.55%mean Intersection over Union(mean IoU)metrics using the mentioned dataset.

关键词： Computer aided diagnosis(CAD) magnetic resonance imaging(MRI) semantic segmentation lumbar vertebrae deep learning U-Net model

An SPH Framework for earthquake-Induced Liquefaction Hazard Assessment of Geotechnical Structures

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Computer Modeling in engineering & Sciences 2025年第1期142卷 251-277页

作者： Sourabh Mhaski G.v.Ramana Department of Civil engineering Indian Institute of Technology DelhiNew Delhi110016India

earthquake-induced soil liquefaction poses significant risks to the stability of geotechnical structures *** understanding of the liquefaction triggering,and the post-failure large deformation behaviour is essential for designing resilient *** present study develops a Smoothed Particle Hydrodynamics(SPH)framework for earthquake-induced liquefaction hazard assessment of geotechnical *** coupled flowdeformation behaviour of soils subjected to cyclic loading is described using the PM4Sand model implemented in a three-phase,single-layer SPH framework.A staggered discretisation scheme based on the stress particle SPH approach is adopted to minimise numerical inaccuracies caused by zero-energy modes and tensile ***,non-reflecting boundary conditions for seismic analysis of semi-infinite soil domains using the SPH method are *** numerical framework is employed for the analysis of cyclic direct simple shear test,seismic analysis of a level ground site,and liquefaction-induced failure of the Lower San Fernando *** agreement for liquefaction triggering and post-failure behaviour demonstrates that the SPH framework can be utilised to assess the effect of seismic loading on field-scale geotechnical *** present study also serves as the basis for future advancements of the SPH method for applications related to earthquake geotechnical engineering.

关键词： earthquake seismic liquefaction stress particle PM4Sand smoothed particle hydrodynamics(SPH)

Autism spectrum disorder:difficulties in diagnosis and microRNA biomarkers

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Neural Regeneration Research 2025年第10期20卷 2776-2786页

作者： Bridget Martinez Philip v.Peplow Department of Pharmacology University of Nevada-RenoRenoNVUSA Department of Medicine University of Nevada-RenoRenoNVUSA Department of Anatomy University of OtagoDunedinNew Zealand

We performed a PubMed search for microRNAs in autism spectrum disorder that could serve as diagnostic biomarkers in patients and selected 17 articles published from January 2008 to December 2023,of which 4 studies were performed with whole blood,4 with blood plasma,5 with blood serum,1 with serum neural cell adhesion molecule L1-captured extracellular vesicles,1 with blood cells,and 2 with peripheral blood mononuclear *** of the studies involved children and the study cohorts were largely *** of the studies had performed microRNA sequencing or quantitative polymerase chain reaction assays to measure microRNA *** five studies had used real-time polymerase chain reaction assay to validate microRNA expression in autism spectrum disorder subjects compared to *** microRNAs that were validated in these studies may be considered as potential candidate biomarkers for autism spectrum disorder and include miR-500a-5p,-197-5p,-424-5p,-664a-3p,-365a-3p,-619-5p,-664a-3p,-3135a,-328-3p,and-500a-5p in blood plasma and miR-151a-3p,-181b-5p,-320a,-328,-433,-489,-572,-663a,-101-3p,-106b-5p,-19b-3p,-195-5p,and-130a-3p in blood serum of children,and miR-15b-5p and-6126 in whole blood of *** important limitations were identified in the studies reviewed,and need to be taken into account in future *** studies are warranted with children and adults having different levels of autism spectrum disorder severity and consideration should be given to using animal models of autism spectrum disorder to investigate the effects of suppressing or overexpressing specific microRNAs as a novel therapy.

关键词： autism spectrum disorder biomarker blood cells blood plasma blood serum diagnosis microRNA peripheral blood mononuclear cells serum neural cell adhesion molecule L1-captured extracellular vesicles whole blood

MicroRNAs as potential diagnostic biomarkers for bipolar disorder

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Neural Regeneration Research 2025年第6期20卷 1681-1695页

Abnormal expression of microRNAs is connected to brain development and disease and could provide novel biomarkers for the diagnosis and prognosis of bipolar disorder. We performed a PubMed search for microRNA biomarkers in bipolar disorder and found 18 original research articles on studies performed with human patients and published from January 2011 to June 2023. These studies included microRNA profiling in bloodand brain-based materials. From the studies that had validated the preliminary findings,potential candidate biomarkers for bipolar disorder in adults could be miR-140-3p,-30d-5p,-330-5p,-378a-5p,-21-3p,-330-3p,-345-5p in whole blood, miR-19b-3p,-1180-3p,-125a-5p, let-7e-5p in blood plasma, and miR-7-5p,-23b-5p,-142-3p,-221-5p,-370-3p in the blood serum. Two of the studies had investigated the changes in microRNA expression of patients with bipolar disorder receiving treatment. One showed a significant increase in plasma miR-134 compared to baseline after 4 weeks of treatment which included typical antipsychotics, atypical antipsychotics, and benzodiazepines. The other study had assessed the effects of prescribed medications which included neurotransmitter receptorsite binders(drug class B) and sedatives, hypnotics, anticonvulsants, and analgesics(drug class C) on microRNA results. The combined effects of the two drug classes increased the significance of the results for miR-219 and-29c with miR-30e-3p and-526b* acquiring significance. MicroRNAs were tested to see if they could serve as biomarkers of bipolar disorder at different clinical states of mania, depression, and euthymia. One study showed that upregulation in whole blood of miR-9-5p,-29a-3p,-106a-5p,-106b-5p,-107,-125a-3p,-125b-5p and of miR-107,-125a-3p occurred in manic and euthymic patients compared to controls, respectively, and that upregulation of miR-106a-5p,-107 was found for manic compared to euthymic patients. In two other studies using blood plasma,downregulation of miR-134 was observed i

关键词： biomarker bipolar disorder blood leukocytes blood plasma blood plasma extracellular vesicles/exosomes blood serum brain tissue brain tissue extracellular vesicles/exosomes lymphoblastoid cell lines microRNA neural progenitor cells whole blood

MicroRNAs as potential biomarkers for diagnosis of post-traumatic stress disorder

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Neural Regeneration Research 2025年第7期20卷 1957-1970页

Post-traumatic stress disorder is a mental disorder caused by exposure to severe traumatic life ***,there are no validated biomarkers or laboratory tests that can distinguish between trauma survivors with and without post-traumatic stress *** addition,the heterogeneity of clinical presentations of post-traumatic stress disorder and the overlap of symptoms with other conditions can lead to misdiagnosis and inappropriate *** suggests that this condition is a multisystem disorder that affects many biological systems,raising the possibility that peripheral markers of disease may be used to diagnose post-traumatic stress *** performed a PubMed search for microRNAs(miRNAs)in post-traumatic stress disorder(PTSD)that could serve as diagnostic biomarkers and found 18 original research articles on studies performed with human patients and published January 2012 to December *** included four studies with whole blood,seven with peripheral blood mononuclear cells,four with plasma extracellular vesicles/exosomes,and one with serum *** of these studies had also used whole *** studies were excluded as they did not involve microRNA *** of the studies had collected samples from adult male veterans who had returned from deployment and been exposed to combat,and only two were from recently traumatized adult *** measuring miRNA expression levels,many of the studies had used microarray miRNA analysis,miRNA Seq analysis,or NanoString *** six studies had used real time polymerase chain reaction assay to determine/validate miRNA expression in PTSD subjects compared to *** miRNAs that were found/validated in these studies may be considered as potential candidate biomarkers for PTSD and include miR-3130-5p in whole blood;miR-193a-5p,-7113-5p,-125a,-181c,and-671-5p in peripheral blood mononuclear cells;miR-10b-5p,-203a-3p,-4488,-502-3p,-874-3p,-5100,and-7641 in plasma extracellular vesicles/

关键词： biomarker diagnosis microRNA peripheral blood mononuclear cells plasma extracellular vesicles/exosomes post-traumatic stress disorder serum exosomes whole blood whole plasma