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Taxonomic monograph of epifoliar fungi

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Fungal Diversity 2023年第4期121卷 139-334页

作者： D.S.Marasinghe S.Hongsanan X.Y.Zeng e.b.g.jones P.Chomnunti S.boonmee K.D.Hyde Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Faculty of Sciences Research Center of Microbial Diversity and Sustainable UtilizationChiang Mai UniversityChiang Mai 50200Thailand Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025China Nantgaredig 33B St.Edwards RoadSouthsea PO53DHHantsUK Department of biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Department of botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi Arabia Shenzhen Key Laboratory of Microbial genetic engineering College of Life Sciences and OceanographyShenzhen UniversityShenzhen 518060GuangdongPeople’s Republic of China

epifoliar fungi are one of the significant fungal groups typically living on the surface of leaves. They are usually recordedas saprobes, obligate parasites and commensals and are widely distributed in tropical and subtropical regions. Numerousgenera within this group remain inadequately understood, primarily attributed to limited taxonomic knowledge and insufficientmolecular data. Furthermore, the taxonomic delineation of epifoliar fungi remained uncertain, with scattered andliterature-based data often intermixed with other follicolous fungi. Herein, a comprehensive taxonomic monograph of 124genera in (32) Asterinales, (18) Capnodiales, (15) Chaetothyriales, (8) Meliolales, (8) Micropeltidales, (10) Microthyriales,(32) Parmulariales and (1) Zeloasperisporiales was provided re-describing with illustrations and line drawings. Notes onecological and economic importance of the families are also provided. Representatives type herbarium materials of Campoapulcherrima, Cycloschizon brachylaenae, Ferrarisia philippina, Hysterostomella guaranitica, Palawaniella orbiculata andPseudolembosia orbicularis of Parmulariaceae were re-examined and provided updated illustrations with descriptions. Abackbone phylogenetic tree and divergence estimation analysis for epifoliar fungi based on LSU and 5.8s ITS sequence dataare provided.

关键词： Divergence Follicolous Obligate Parmulariaceae Tropical

DISCOMYCeTeS: the apothecial representatives of the phylum Ascomycota

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Fungal Diversity 2017年第6期87卷 237-298页

作者： A.H.ekanayaka H.A.Ariyawansa K.D.Hyde e.b.g.jones D.A.Daranagama A.J.L.Phillips S.Hongsanan S.C.Jayasiri Qi Zhao Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanPeople’s Republic of China Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Plant Pathology and Microbiology College of Bio-resources and AgricultureNational Taiwan UniversityNo.1Sec.4Roosevelt RoadTaipei 106TaiwanROC Department of entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal biotechnology and germplasm Resources Institute Yunnan Academy of Agricultural ScienceKunming 650221YunnanPeople’s Republic of China

Discomycetes are an artificial grouping of apothecia-producing fungi in the phylum ***-based studies have revealed that the discomycetes can be found among ten classes of *** classification of discomycetes has been a major challenge due to the lack of a clear understanding of the important morphological characters,as well as a lack of reference *** this review,we provide a historical perspective of discomycetes,notes on their morphology(including both asexual and sexual morphs),ecology and importance,an outline of discomycete families and a synoptical cladogram of currently accepted families in Ascomycota showing their systematic *** also calculated evolutionary divergence times for major discomycetous taxa based on phylogenetic relationships using a combined LSU,SSU and RPb2 data set from 175 strains and fossil *** results confirm that discomycetes are found in two major subphyla of the Ascomycota:Taphrinomycotina and *** taxonomic placement of major discomycete taxa is briefly *** most basal group of discomycetes is the class Neolectomycetes,which diverged from other Taphrinomycotina around 417 MYA(216–572),and the most derived group of discomycetes,the class Lecanoromycetes,diverged from eurotiomycetes around 340 MYA(282–414).Further clarifications based on type specimens,designation of epitypes or reference specimens from fresh collections,and multi-gene analyses are needed to determine the taxonomic arrangement of many discomycetes.

关键词： Asci amyloidity Lichenized discomycetes Non-operculate discomycetes Operculate discomycetes

Profile of bionectriaceae,Calcarisporiaceae,Hypocreaceae,Nectriaceae,Tilachlidiaceae,Ijuhyaceae ***.,Stromatonectriaceae *** Xanthonectriaceae ***

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Fungal Diversity 2023年第1期118卷 95-271页

作者： R.H.Perera K.D.Hyde e.b.g.jones S.S.N.Maharachchikumbura D.bundhun e.Camporesi A.Akulov J.K.Liu Z.Y.Liu guizhou Key Laboratory of Agricultural biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouPeople’s Republic of China Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Innovative Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Department of entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Department of botany and Microbiology College of ScienceKingdom of Saudi ArabiaKing Saud UniversityP.O Box 2455Riyadh 11451Saudi Arabia A.M.b Circolo Micologico“Giovanni Carini”C.P.314BresciaItaly A.M.b.gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForliItaly Societaper gli Studi Naturalistici Della Romagna C.P.143BagnacavalloRAItaly Department of Mycology and Plant Resistance V.N.Karazin Kharkiv National UniversityMaidan Svobody 4Kharkiv 61022Ukraine

This paper provides outlines for bionectriaceae,Calcarisporiaceae,Hypocreaceae,Nectriaceae,Tilachlidiaceae,Ijuhy-aceae,Stromatonectriaceae and Xanthonectriaceae with taxonomic *** provide up-to-date DNA sequence-based phylogenies including combined gene analysis of ITS,LSU,rpb2,tef1 and tub2 for Hypocreales and accept 17 *** new families and 12 new species are introduced with descriptions and illustrations,while 13 new records and one new species combination are *** we mainly detail the taxonomy of bionectriaceae,Hypocreaceae,Nectriaceae and Tilachlidiaceae,Ijuhyaceae ***.,Stromatonectriaceae *** Xanthonectriaceae *** introduced in this study based on phenotypic and molecular *** each family we provide a list of accepted genera,the taxo-nomic history,morphological descriptions,taxonomic placement based on DNA sequence data and illustrate the type *** of each family are illustrated based on the type herbarium material or fresh specimens where available,or provide relevant *** on ecological and economic importance of the families are also given.

关键词： 15 New taxa genera incertae sedis Hypocreales New records Outline Phylogeny Sordariomycetes Taxonomy

Occurrence and geographical distribution of mangrove fungi

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Fungal Diversity 2021年第1期106卷 137-227页

作者： b.Devadatha e.b.g.jones K.L.Pang M.A.Abdel-Wahab K.D.Hyde J.Sakayaroj A.H.bahkali M.S.Calabon V.V.Sarma S.Sutreong S.N.Zhang Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Department of botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Institute of Marine biology and Centre of excellence for the Oceans National Taiwan Ocean University2 Pei-NingRoadKeelung 20224TaiwanROC Department of botany and Microbiology Faculty of ScienceSohag UniversitySohag 82524Egypt School of Science Walailak University222 ThaiburiThasala DistrictNakhon Si Thammarat 80161Thailand Department of biotechnology School of Life SciencesPondicherry UniversityKalapetPondicherry 605014India National biobank of Thailand(NbT) National Science and Technology Development Agency(NSTDA)111 Thailand Science ParkThanon PhahonyothinTambon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand

This is a multidimensional review of mangrove fungi occurring as saprobes,pathogens and endophytes of a wide range of host substrates and those isolated from the water columns and sediments in ***-hundred and fifty taxa including 658 that are supported by both morphology and molecular data and 192 with only morphological data are *** constitute Ascomycota,the dominant group with 773 species,and 58 basidiomycota,one blastocladiomycota,five Chytridiomycota,and 13 *** study also includes data on mangrove yeasts 103 Ascomycota,39 basidi-omycota and 193 taxa isolated from *** isolated from submerged parts of mangrove plants total *** most specious orders of mangrove fungi are Pleosporales 133,Saccharomycetales 102,Microascales 101,eurotiales 87,Hypocreales 60 and Xylariales *** genera include Candida 39,Aspergillus 53,Penicillium 17 and Corollospora *** highest number of mangrove fungi have been recorded from the Pacific Ocean 553,which is the largest ocean,followed by Indian 408 and Atlantic Oceans *** distribution of mangrove fungi varied from ocean to ocean with only 109 taxa common to the Atlantic,Indian and Pacific *** the various countries reported for mangrove fungi,India accommodates the highest number(339)followed by Thailand 303,Malaysia 171,Florida everglades,USA 134 and brunei 134.A total of 60 different mangrove plants and their associates have been surveyed for mangrove *** results are discussed and compared with previous studies.

关键词： Host preference Marine ecology Marine fungi World distribution

中国南海红树内生真菌No.1403次级代谢物的研究

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中山大学学报（自然科学版） 2000年第6期39卷 68-72页

作者：姜广策林永成周世宁 L.L.P.VRIJMOeD e.b.g.jones 中山大学化学与化学工程学院广东广州510275 中山大学生命科学学院广东广州510275 香港城市大学生物和化学系

中国南海红树的内生真菌No 140 3是由香港城市大学Vrijmoed教授等分离出来的 .其发酵液粗提物有明显的抗菌活性 ,对酵母菌和霉菌均有抑制作用 .采用硅胶柱层析、核磁共振、质谱 ,红外光谱和X光结晶衍射等方法对该菌静置培养的发酵液化... 详细信息

中国南海红树的内生真菌No 140 3是由香港城市大学Vrijmoed教授等分离出来的 .其发酵液粗提物有明显的抗菌活性 ,对酵母菌和霉菌均有抑制作用 .采用硅胶柱层析、核磁共振、质谱 ,红外光谱和X光结晶衍射等方法对该菌静置培养的发酵液化学成分进行研究 ,发现真菌No 140 3能产生灰黄霉素A和多种醌类抗生素b ,C ,D及其它化合物 ,其中C未见文献报道 .A的产量很高 ,约为 2 0mg/L ,本研究表明No 140 3是有应用价值的灰黄霉素新的产生菌 .

关键词：内生真菌次级代谢物抗生素抗菌活动红树

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Study of hybrid nanofluid flow in a stationary cone-disk system with temperature-dependent fluid properties

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Applied Mathematics and Mechanics(english edition) 2024年第4期45卷 677-694页

作者： A.S.JOHN b.MAHANTHeSH g.LOReNZINI Center for Mathematical Needs Department of MathematicsCHRIST(Deemed to be University)Karnataka 560029India School of Mathematical and Statistical Sciences The University of Texas Rio Grande ValleyTexas 78539U.S.A. Department of engineering and Architecture University of ParmaParma 43124Italy

Cone-disk systems find frequent use such as conical diffusers,medical devices,various rheometric,and viscosimetry *** this study,we investigate the three-dimensional flow of a water-based Ag-Mg O hybrid nanofluid in a static cone-disk system while considering temperature-dependent fluid *** the variable fluid properties affect the dynamics and heat transfer features is studied by Reynolds's linearized model for variable viscosity and Chiam's model for variable thermal *** single-phase nanofluid model is utilized to describe convective heat transfer in hybrid nanofluids,incorporating the experimental *** model is developed as a coupled system of convective-diffusion equations,encompassing the conservation of momentum and the conservation of thermal energy,in conjunction with an incompressibility condition.A self-similar model is developed by the Lie-group scaling transformations,and the subsequent self-similar equations are then solved *** influence of variable fluid parameters on both swirling and non-swirling flow cases is ***,the Nusselt number for the disk surface is *** is found that an increase in the temperature-dependent viscosity parameter enhances heat transfer characteristics in the static cone-disk system,while the thermal conductivity parameter has the opposite effect.

关键词： hybrid nanofluid cone-disk system laminar flow variable fluid property Nusselt number

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Optimal Control of Service Rates of Discrete-Time(s,Q)Queueing-Inventory Systems with Finite buffer

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Journal of Systems Science and Systems engineering 2024年第3期33卷 261-280页

作者： L.Iniya b.Sivakumar g.Arivarignan School of Mathematics Madurai Kamaraj UniversityMaduraiTamilnaduIndia Department of Statistics Manonmaniam Sundaranar UniversityTirunelveliTamilnaduIndia

This article,we develop an optimal policy to control the service rate of a discrete time queueing-inventory system with finite *** customers arrive according to a bernoulli process and the service time for the customers are *** the buffer size attains its maximum,any arriving new customers are considered to be *** customers are served one by one according to FCFS rule and each customers request random number of *** inventory is replenished according to a(s,Q)inventory policy with geometric lead *** main objectives of this article are to determine the service rates to be employed at each slot so that the long run expected cost rate is minimized for fixed inventory level and fixed buffer size and to minimize the expected waiting time for a fixed inventory level and fixed buffer *** problems are modelled as Markov decision *** establish the existence of a stationary policy and employ linear programming method to find the optimal service *** provide some numerical examples to illustrate the behaviour of the model.

关键词： Queueing-inventory system discrete time batch demand-Markov decision process

The great catastrophe: causes of the Permo-Triassic marine mass extinction

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National Science Review 2024年第1期11卷 37-50页

作者： Paul b.Wignall David P.g.bond School of earth & environment University of Leeds School of environmental Sciences University of Hull

The marine losses during the Permo-Triassic mass extinction were the worst ever experienced. All groups were badly affected, especially amongst the benthos(e.g. brachiopods, corals, bryozoans, foraminifers,ostracods). Planktonic populations underwent a fundamental change with eukaryotic algae being replaced by nitrogen-fixing bacteria, green-sulphur bacteria, sulphate-reducing bacteria and prasinophytes. Detailed studies of boundary sections, especially those in South China, have resolved the crisis to a ～55 kyr interval straddling the Permo-Triassic boundary. Many of the losses occur at the beginning and end of this interval painting a picture of a two-phase extinction. Improved knowledge of the extinction has been supported by numerous geochemical studies that allow diverse proposed extinction mechanisms to be studied. A transition from oxygenated to anoxic-euxinic conditions is seen in most sections globally, although the intensity and timing shows regional variability. Decreased ocean ventilation coincides with rapidly rising temperatures and many extinction scenarios attribute the losses to both anoxia and high *** kill mechanisms include ocean acidification for which there is conflicting support from geochemical proxies and, even less likely, siltation(burial under a massive influx of terrigenous sediment) which lacks substantive sedimentological evidence. The ultimate driver of the catastrophic changes at the end of the Permian was likely Siberian Trap eruptions and their associated carbon dioxide emissions with consequences such as warming, ocean stagnation and acidification. Volcanic winter episodes stemming from Siberian volcanism have also been linked to the crisis, but the short-term nature of these episodes(ecades) and the overwhelming evidence for rapid warming during the crisis makes this an unlikely cause. Finally, whilst the extinction is well studied in equatorial latitudes, a different history is found in northern boreal latitudes

关键词： ocean anoxia ocean acidification siltation productivity collapse volcanic winter

LKb1 depletion-mediated epithelial-mesenchymal transition induces fibroblast activation in lung fibrosis

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genes & Diseases 2024年第3期11卷 417-426页

作者： Zijian Xu elizabeth R.Davies Liudi Yao Yilu Zhou Juanjuan Li Aiman Alzetani ben g.Marshall David Hancock Tim Wallis Julian Downward Rob M.ewing Donna e.Davies Mark g.jones Yihua Wang biological Sciences Faculty of Environmental and Life SciencesUniversity of SouthamptonSouthampton SO171BJUK clinical and experimental Sciences Faculty of MedicineUniversity of SouthamptonSouthampton SO166YDUK Institute for Life Sciences University of SouthamptonSouthampton SO171BJUK NIHR Southampton biomedical Research Centre University Hospital SouthamptonSouthampton SO166YDUK University Hospital Southampton Southampton SO166YDUK Oncogene biology The Francis Crick InstituteLondon NW11ATUK

The factors that determine fibrosis progression or normal tissue repair are largely *** previously demonstrated that autophagy inhibition-mediated epithelial-mesenchymal transition(eMT)in human alveolar epithelial type Il(ATIl)cells augments local myofibroblast differentiation in pulmonary fibrosis by paracrine ***,we report that liver kinase b1(LKb1)inactivation in ATIl cells inhibits autophagy and induces eMT as a *** IPF lungs,this is caused by the down-regulation of CAb39L,a key subunit within the LKb1 complex.3D co-cultures of ATIl cells and MRC5 lung fibroblasts coupled with RNA sequencing(RNA-seq)confirmed that paracrine signaling between LKb1-depleted ATIl cells and fibroblasts augmented myofibroblast ***,these data suggest that reduced autophagy caused by LKb1 inhibition can induce eMT in ATIl cells and contribute to fibrosis via aberrant epithelial-fibroblast crosstalk.

关键词： CAb39L Crosstalk eMT LKb1 Pulmonary fibrosis