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Taxonomic monograph of epifoliar fungi

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Fungal Diversity 2023年第4期121卷 139-334页

作者： D.S.Marasinghe S.Hongsanan X.Y.Zeng e.b.g.jones P.Chomnunti S.boonmee K.D.Hyde Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Innovative Institute for Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China Faculty of Sciences Research Center of Microbial Diversity and Sustainable UtilizationChiang Mai UniversityChiang Mai 50200Thailand Department of Plant Pathology College of AgricultureGuizhou UniversityGuiyang 550025China Nantgaredig 33B St.Edwards RoadSouthsea PO53DHHantsUK Department of biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Department of botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi Arabia Shenzhen Key Laboratory of Microbial genetic engineering College of Life Sciences and OceanographyShenzhen UniversityShenzhen 518060GuangdongPeople’s Republic of China

epifoliar fungi are one of the significant fungal groups typically living on the surface of leaves. They are usually recordedas saprobes, obligate parasites and commensals and are widely distributed in tropical and subtropical regions. Numerousgenera within this group remain inadequately understood, primarily attributed to limited taxonomic knowledge and insufficientmolecular data. Furthermore, the taxonomic delineation of epifoliar fungi remained uncertain, with scattered andliterature-based data often intermixed with other follicolous fungi. Herein, a comprehensive taxonomic monograph of 124genera in (32) Asterinales, (18) Capnodiales, (15) Chaetothyriales, (8) Meliolales, (8) Micropeltidales, (10) Microthyriales,(32) Parmulariales and (1) Zeloasperisporiales was provided re-describing with illustrations and line drawings. Notes onecological and economic importance of the families are also provided. Representatives type herbarium materials of Campoapulcherrima, Cycloschizon brachylaenae, Ferrarisia philippina, Hysterostomella guaranitica, Palawaniella orbiculata andPseudolembosia orbicularis of Parmulariaceae were re-examined and provided updated illustrations with descriptions. Abackbone phylogenetic tree and divergence estimation analysis for epifoliar fungi based on LSU and 5.8s ITS sequence dataare provided.

关键词： Divergence Follicolous Obligate Parmulariaceae Tropical

DISCOMYCeTeS: the apothecial representatives of the phylum Ascomycota

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Fungal Diversity 2017年第6期87卷 237-298页

作者： A.H.ekanayaka H.A.Ariyawansa K.D.Hyde e.b.g.jones D.A.Daranagama A.J.L.Phillips S.Hongsanan S.C.Jayasiri Qi Zhao Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanPeople’s Republic of China Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Plant Pathology and Microbiology College of Bio-resources and AgricultureNational Taiwan UniversityNo.1Sec.4Roosevelt RoadTaipei 106TaiwanROC Department of entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Faculty of Sciences Biosystems and Integrative Sciences Institute(BioISI)University of LisbonCampo Grande1749-016 LisbonPortugal biotechnology and germplasm Resources Institute Yunnan Academy of Agricultural ScienceKunming 650221YunnanPeople’s Republic of China

Discomycetes are an artificial grouping of apothecia-producing fungi in the phylum ***-based studies have revealed that the discomycetes can be found among ten classes of *** classification of discomycetes has been a major challenge due to the lack of a clear understanding of the important morphological characters,as well as a lack of reference *** this review,we provide a historical perspective of discomycetes,notes on their morphology(including both asexual and sexual morphs),ecology and importance,an outline of discomycete families and a synoptical cladogram of currently accepted families in Ascomycota showing their systematic *** also calculated evolutionary divergence times for major discomycetous taxa based on phylogenetic relationships using a combined LSU,SSU and RPb2 data set from 175 strains and fossil *** results confirm that discomycetes are found in two major subphyla of the Ascomycota:Taphrinomycotina and *** taxonomic placement of major discomycete taxa is briefly *** most basal group of discomycetes is the class Neolectomycetes,which diverged from other Taphrinomycotina around 417 MYA(216–572),and the most derived group of discomycetes,the class Lecanoromycetes,diverged from eurotiomycetes around 340 MYA(282–414).Further clarifications based on type specimens,designation of epitypes or reference specimens from fresh collections,and multi-gene analyses are needed to determine the taxonomic arrangement of many discomycetes.

关键词： Asci amyloidity Lichenized discomycetes Non-operculate discomycetes Operculate discomycetes

Profile of bionectriaceae,Calcarisporiaceae,Hypocreaceae,Nectriaceae,Tilachlidiaceae,Ijuhyaceae ***.,Stromatonectriaceae *** Xanthonectriaceae ***

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Fungal Diversity 2023年第1期118卷 95-271页

作者： R.H.Perera K.D.Hyde e.b.g.jones S.S.N.Maharachchikumbura D.bundhun e.Camporesi A.Akulov J.K.Liu Z.Y.Liu guizhou Key Laboratory of Agricultural biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouPeople’s Republic of China Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Innovative Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Department of entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand Department of botany and Microbiology College of ScienceKingdom of Saudi ArabiaKing Saud UniversityP.O Box 2455Riyadh 11451Saudi Arabia A.M.b Circolo Micologico“Giovanni Carini”C.P.314BresciaItaly A.M.b.gruppo Micologico Forlivese“Antonio Cicognani”Via Roma 18ForliItaly Societaper gli Studi Naturalistici Della Romagna C.P.143BagnacavalloRAItaly Department of Mycology and Plant Resistance V.N.Karazin Kharkiv National UniversityMaidan Svobody 4Kharkiv 61022Ukraine

This paper provides outlines for bionectriaceae,Calcarisporiaceae,Hypocreaceae,Nectriaceae,Tilachlidiaceae,Ijuhy-aceae,Stromatonectriaceae and Xanthonectriaceae with taxonomic *** provide up-to-date DNA sequence-based phylogenies including combined gene analysis of ITS,LSU,rpb2,tef1 and tub2 for Hypocreales and accept 17 *** new families and 12 new species are introduced with descriptions and illustrations,while 13 new records and one new species combination are *** we mainly detail the taxonomy of bionectriaceae,Hypocreaceae,Nectriaceae and Tilachlidiaceae,Ijuhyaceae ***.,Stromatonectriaceae *** Xanthonectriaceae *** introduced in this study based on phenotypic and molecular *** each family we provide a list of accepted genera,the taxo-nomic history,morphological descriptions,taxonomic placement based on DNA sequence data and illustrate the type *** of each family are illustrated based on the type herbarium material or fresh specimens where available,or provide relevant *** on ecological and economic importance of the families are also given.

关键词： 15 New taxa genera incertae sedis Hypocreales New records Outline Phylogeny Sordariomycetes Taxonomy

Occurrence and geographical distribution of mangrove fungi

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Fungal Diversity 2021年第1期106卷 137-227页

作者： b.Devadatha e.b.g.jones K.L.Pang M.A.Abdel-Wahab K.D.Hyde J.Sakayaroj A.H.bahkali M.S.Calabon V.V.Sarma S.Sutreong S.N.Zhang Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Department of botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Institute of Marine biology and Centre of excellence for the Oceans National Taiwan Ocean University2 Pei-NingRoadKeelung 20224TaiwanROC Department of botany and Microbiology Faculty of ScienceSohag UniversitySohag 82524Egypt School of Science Walailak University222 ThaiburiThasala DistrictNakhon Si Thammarat 80161Thailand Department of biotechnology School of Life SciencesPondicherry UniversityKalapetPondicherry 605014India National biobank of Thailand(NbT) National Science and Technology Development Agency(NSTDA)111 Thailand Science ParkThanon PhahonyothinTambon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand

This is a multidimensional review of mangrove fungi occurring as saprobes,pathogens and endophytes of a wide range of host substrates and those isolated from the water columns and sediments in ***-hundred and fifty taxa including 658 that are supported by both morphology and molecular data and 192 with only morphological data are *** constitute Ascomycota,the dominant group with 773 species,and 58 basidiomycota,one blastocladiomycota,five Chytridiomycota,and 13 *** study also includes data on mangrove yeasts 103 Ascomycota,39 basidi-omycota and 193 taxa isolated from *** isolated from submerged parts of mangrove plants total *** most specious orders of mangrove fungi are Pleosporales 133,Saccharomycetales 102,Microascales 101,eurotiales 87,Hypocreales 60 and Xylariales *** genera include Candida 39,Aspergillus 53,Penicillium 17 and Corollospora *** highest number of mangrove fungi have been recorded from the Pacific Ocean 553,which is the largest ocean,followed by Indian 408 and Atlantic Oceans *** distribution of mangrove fungi varied from ocean to ocean with only 109 taxa common to the Atlantic,Indian and Pacific *** the various countries reported for mangrove fungi,India accommodates the highest number(339)followed by Thailand 303,Malaysia 171,Florida everglades,USA 134 and brunei 134.A total of 60 different mangrove plants and their associates have been surveyed for mangrove *** results are discussed and compared with previous studies.

关键词： Host preference Marine ecology Marine fungi World distribution

中国南海红树内生真菌No.1403次级代谢物的研究

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中山大学学报（自然科学版） 2000年第6期39卷 68-72页

作者：姜广策林永成周世宁 L.L.P.VRIJMOeD e.b.g.jones 中山大学化学与化学工程学院广东广州510275 中山大学生命科学学院广东广州510275 香港城市大学生物和化学系

中国南海红树的内生真菌No 140 3是由香港城市大学Vrijmoed教授等分离出来的 .其发酵液粗提物有明显的抗菌活性 ,对酵母菌和霉菌均有抑制作用 .采用硅胶柱层析、核磁共振、质谱 ,红外光谱和X光结晶衍射等方法对该菌静置培养的发酵液化... 详细信息

中国南海红树的内生真菌No 140 3是由香港城市大学Vrijmoed教授等分离出来的 .其发酵液粗提物有明显的抗菌活性 ,对酵母菌和霉菌均有抑制作用 .采用硅胶柱层析、核磁共振、质谱 ,红外光谱和X光结晶衍射等方法对该菌静置培养的发酵液化学成分进行研究 ,发现真菌No 140 3能产生灰黄霉素A和多种醌类抗生素b ,C ,D及其它化合物 ,其中C未见文献报道 .A的产量很高 ,约为 2 0mg/L ,本研究表明No 140 3是有应用价值的灰黄霉素新的产生菌 .

关键词：内生真菌次级代谢物抗生素抗菌活动红树

Stepping up after spinal cord injury:negotiating an obstacle during walking

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Neural Regeneration Research 2025年第7期20卷 1919-1929页

作者： Alain Frigon Charly g.Lecomte Department of Pharmacology-Physiology Faculty of Medicine and Health SciencesUniversitéde SherbrookeCentre de recherche du Centre Hospitalier Universitaire de SherbrookeSherbrookeQCCanada

every day walking consists of frequent voluntary modifications in the gait pattern to negotiate *** spinal cord injury,stepping over an obstacle becomes *** over an obstacle requires sensorimotor transformations in several structures of the brain,including the parietal cortex,premotor cortex,and motor *** information and planning are transformed into motor commands,which are sent from the motor cortex to spinal neuronal circuits to alter limb trajectory,coordinate the limbs,and maintain *** spinal cord injury,bidirectional communication between the brain and spinal cord is disrupted and animals,including humans,fail to voluntarily modify limb trajectory to step over an ***,in this review,we discuss the neuromechanical control of stepping over an obstacle,why it fails after spinal cord injury,and how it recovers to a certain extent.

关键词： biomechanics locomotion neurophysiology obstacle negotiation spinal cord injury

Intrumer:A Multi Module Distributed explainable IDS/IPS for Securing Cloud environment

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Computers, Materials & Continua 2025年第1期82卷 579-607页

作者： Nazreen banu A S.K.b.Sangeetha Department of Computer Science and engineering SRM Institute of Science and TechnologyVadapalani CampusChennai600026Tamil NaduIndia

The increasing use of cloud-based devices has reached the critical point of cybersecurity and unwanted network *** environments pose significant challenges in maintaining privacy and *** approaches,such as IDS,have been developed to tackle these ***,most conventional Intrusion Detection System(IDS)models struggle with unseen cyberattacks and complex high-dimensional *** fact,this paper introduces the idea of a novel distributed explainable and heterogeneous transformer-based intrusion detection system,named INTRUMeR,which offers balanced accuracy,reliability,and security in cloud settings bymultiplemodulesworking together within *** traffic captured from cloud devices is first passed to the TC&TM module in which the Falcon Optimization Algorithm optimizes the feature selection process,and Naie bayes algorithm performs the classification of *** selected features are classified further and are forwarded to the Heterogeneous Attention Transformer(HAT)*** this module,the contextual interactions of the network traffic are taken into account to classify them as normal or malicious *** classified results are further analyzed by the explainable Prevention Module(XPM)to ensure trustworthiness by providing interpretable *** the explanations fromthe classifier,emergency alarms are transmitted to nearby IDSmodules,servers,and underlying cloud devices for the enhancement of preventive *** experiments on benchmark IDS datasets CICIDS 2017,Honeypots,and NSL-KDD were conducted to demonstrate the efficiency of the INTRUMeR model in detecting network trafficwith high accuracy for different *** outperforms state-of-the-art approaches,obtaining better performance metrics:98.7%accuracy,97.5%precision,96.3%recall,and 97.8%*** results validate the robustness and effectiveness of INTRUMeR in securing diverse cloud environments against sophisticated cyber threats.

关键词： Cloud computing intrusion detection system transformers and explainable artificial intelligence(XAI)

Neuroinflammation revisited through the microglial lens

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Neural Regeneration Research 2025年第7期20卷 1989-1990页

作者： Renato Socodato João b.Relvas Institute of Research and Innovation in Health(i3S)and Institute for Molecular and Cell biology(IbMC) University of PortoPortoPortugal Department of biomedicine Faculty of Medicine of the University of Porto(FMUP)PortoPortugal

Neuroimmunology is emerging as a pivotal field,shedding light on the intricate dialogues between the central nervous system(CNS)and the immune *** exploration is particularly significant in understanding microglia,the CNS’s innate immune cells,beyond the conventional conflation of“neuroinflammation”and“microglial activation.”This conflation has clouded the true complexity of these processes,potentially stalling scientific progress and the development of new *** challenge the long-standing perspectives that have oversimplified these interactions,advocating for a deeper exploration of the dynamic relationship between neuroinflammation and microglial *** dissecting specific molecular pathways,we aim to illuminate their elaborate roles in neuroinflammatory responses,especially in the context of Alzheimer’s disease(AD).Here,neuroinflammation is not merely a passive observer or a direct antagonist but a complex agent in the disease’s *** article calls for a significant paradigm shift towards an integrative,multi-omics approach to *** such a comprehensive framework is crucial for advancing our understanding of neuroinflammatory conditions and paving the way for targeted therapeutic strategies for brain diseases.

关键词： inflammation simplified activation

An SPH Framework for earthquake-Induced Liquefaction Hazard Assessment of geotechnical Structures

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Computer Modeling in engineering & Sciences 2025年第1期142卷 251-277页

作者： Sourabh Mhaski g.V.Ramana Department of Civil engineering Indian Institute of Technology DelhiNew Delhi110016India

earthquake-induced soil liquefaction poses significant risks to the stability of geotechnical structures *** understanding of the liquefaction triggering,and the post-failure large deformation behaviour is essential for designing resilient *** present study develops a Smoothed Particle Hydrodynamics(SPH)framework for earthquake-induced liquefaction hazard assessment of geotechnical *** coupled flowdeformation behaviour of soils subjected to cyclic loading is described using the PM4Sand model implemented in a three-phase,single-layer SPH framework.A staggered discretisation scheme based on the stress particle SPH approach is adopted to minimise numerical inaccuracies caused by zero-energy modes and tensile ***,non-reflecting boundary conditions for seismic analysis of semi-infinite soil domains using the SPH method are *** numerical framework is employed for the analysis of cyclic direct simple shear test,seismic analysis of a level ground site,and liquefaction-induced failure of the Lower San Fernando *** agreement for liquefaction triggering and post-failure behaviour demonstrates that the SPH framework can be utilised to assess the effect of seismic loading on field-scale geotechnical *** present study also serves as the basis for future advancements of the SPH method for applications related to earthquake geotechnical engineering.

关键词： earthquake seismic liquefaction stress particle PM4Sand smoothed particle hydrodynamics(SPH)