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In Vivo Phosphorylation Site Mapping and Functional Characterization of Arabidopsis Phototropin 1

Molecular Plant 2008年第1期1卷 178-194页

作者： Stuart Sullivan Catriona E. Thomson douglas j. lamont Matthew A. j.nes j.hn M. Christie Plant Science Group Division of Biochemistry and Molecular Biology. Institute of Biomedical and Life Sciences University of Glasgow. University Avenue. Glasgow Scotland UK FingerPrints Proteomics Facility Post-Genomics and Molecular Interactions Centre. School of Life Sciences MSI/WTB/CIR Complex University of Dundee. Dundee Scotland UK

Phototropins （phot1 and phot2） are blue-light receptor kinases controlling a range of responses that optimize the photosynthetic efficiency of plants. Light sensing is mediated by two flavin-binding motifs, known as LOVl and LOV2, located within the N-terminal region of the protein. Photoexcitation via LOV2 leads to activation of the C-terminal kinase domain and consequently receptor autophosphorylation. However, knowledge of the in-vivo phosphorylation sites for Arabidopsis phototropins is lacking and has impeded progress in elucidating the functional significance of receptor phos- phorylation. We have purified photl from Arabidopsis and identified the in-vivo sites of receptor phosphorylation by liquid chromatography tandem mass spectrometry. Arabidopsis-derived photl binds flavin mononucleotide as chromophore and is phosphorylated at four maj.r sites located upstream of LOV2 （Ser^58, Ser^85, Ser^350, and Ser^410）, three of which are induced by blue light. Nevertheless, structure-function analysis indicates that the biological activity of photl can be attributed to a modular unit comprising the LOV2-kinase region of the protein. Thus, peptide regions upstream of LOV2, including the sites of receptor phosphorylation identified here, do not appear to be important for receptor signaling. By contrast, these regions may be necessary for maximizing stomatal performance and possibly light-induced relocalization of photl.

关键词： Phototropins (phot1 and phot2) lavin-binding motifs

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Seasonal variation and host sex affect bat–bat fly interaction networks in the Amazonian savannahs

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Integrative Zoology 2024年第3期19卷 400-416页

作者： Paulo MEj.A Gustavo Lima URBIETA Bruna da Silva XAVIER Isaíj.rge de CASTRO j.séj.lio DE TOLEDO Gustavo GRACIOLLI Lucio AndréVIANA DIAS William douglas CARVALHO Programa de Pós-Graduação em Biodiversidade Tropical Universidade Federal do Amapá(UNIFAP)MacapáAPBrazil Programa de Pós-Graduação em Ecologia Instituto de BiologiaCentro de Ciências da SaúdeUniversidade Federal do Rio de Janeiro(UFRJ)Rio de JaneiroRJBrazil Laboratório de Mamíferos Instituto de Pesquisas Científicas e Tecnológicas do Estado do Amapá(IEPA)MacapáAPBrazil Programa de Pós-Graduação em Biologia Animal Laboratório de SistemáticaEcologia e Evolução(LSEE)Instituto de BiociênciasUniversidade Federal de Mato Grosso do Sul(UFMS)Campo GrandeMTBrazil Terrestrial Ecology Group(TEG-UAM) Departamento de EcologíaFacultad de CienciasUniversidad Autónoma de MadridMadridSpain Centro de Investigación en Biodiversidad y Cambio Global(CIBC-UAM) Universidad Autónoma de MadridMadridSpain

Bats are the second-most diverse group of mammals in the world,and bat flies are their main ***,significant knowledge gaps remain regarding these antagonistic interactions,especially since diverse factors such as seasonality and host sex can affect their network ***,we explore the influence of such factors by comparing species richness and composition of bat flies on host bats,as well as specialization and modularity of bat–bat fly interaction networks between seasons and adult host *** captured bats and collected their ectoparasitic flies at 10 sampling sites in the savannahs of AmapáState,northeastern region of the Brazilian *** female bats being more parasitized and recording greater bat fly species richness in the wet season,neither relationship was statistically *** pooled network could be divided into 15 compartments with 54 links,and all subnetworks comprised>12 *** total number of links ranged from 27 to 48(for the dry and wet seasons,respectively),and female and male subnetworks had 44 and 41 links,*** values were very low for the pooled network and for all *** results revealed higher bat fly species richness and abundance in the wet season,whereas specialization and modularity were higher in the dry ***,the subnetwork for female bats displayed higher specialization and modularity than the male ***,both seasonality and host sex contribute in different ways to bat–bat fly network *** studies should consider these factors when evaluating bat–bat fly interaction networks.

关键词： Amapá Amazon biome bat flies bats interaction networks

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Oxidized organic molecules in the tropical free troposphere over Amazonia

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National Science Review 2024年第1期11卷 174-184页

作者： Qiaozhi Zha Diego Aliaga Radovan Krej.i Victoria A.Sinclair Cheng Wu Giancarlo Ciarelli Wiebke Scholz Liine Heikkinen Eva Partoll Yvette Gramlich Wei Huang Markus Leiminger j.onas Enroth Otso Per?kyl? Runlong Cai Xuemeng Chen Alkuin Maximilian Koenig Fernando Velarde Isabel Moreno Tuukka Pet?j. Paulo Artaxo Paolo Laj.Armin Hansel Samara Carbone Markku Kulmala Marcos Andrade douglas Worsnop Claudia Mohr Federico Bianchi Institute for Atmospheric and Earth System Research/Physics University of Helsinki j.int International Research Laboratory of Atmospheric and Earth System Sciences Nanjing University Department of Environmental Science & Bolin Centre for Climate Research Stockholm University Department of Chemistry and Molecular Biology University of Gothenburg Institute for Ion and Applied Physics University of Innsbruck Ionicon Analytik GmbH Laboratory for Atmospheric Physics Institute for Physics Research Universidad Mayor de San Andrés Institute of Physics University of Sao Paulo Institute for Geosciences and Environmental Research (IGE) University of Grenoble Alpes Agrarian Sciences Institute Federal University of Uberl?ndia Beij.ng Advanced Innovation Center for Soft Matter Science and Engineering Beijing University of Chemical Technology Department of Atmospheric and Oceanic Sciences University of Maryland Aerodyne Research Inc. Department of Environmental System Science ETH Zürich Switzerland and Laboratory of Atmospheric Chemistry Paul Scherrer Institute

New particle formation(NPF) in the tropical free troposphere(FT) is a globally important source of cloud condensation nuclei, affecting cloud properties and climate. Oxidized organic molecules(OOMs)produced from biogenic volatile organic compounds are believed to contribute to aerosol formation in the tropical FT, but without direct chemical observations. We performed in situ molecular-level OOMs measurements at the Bolivian station Chacaltaya at 5240 m above sea level, on the western edge of Amazonia. For the first time, we demonstrate the presence of OOMs, mainly with 4–5 carbon atoms, in both gas-phase and particle-phase(in terms of mass contribution) measurements in tropical FT air from Amazonia. These observations, combined with air mass history analyses, indicate that the observed OOMs are linked to isoprene emitted from the rainforests hundreds of kilometers away. Based on particle-phase measurements, we find that these compounds can contribute to NPF, at least the growth of newly formed nanoparticles, in the tropical FT on a continental scale. Thus, our study is a fundamental and significant step in understanding the aerosol formation process in the tropical FT.

关键词： oxidized organic molecules tropical aerosol formation Amazon free troposphere

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Tyrosine phosphorylation and bacterial virulence

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International j.urnal of Oral Science 2012年第1期4卷 1-6页

作者： Sarah E Whitmore Richard j.lamont Center for Oral Health and Systemic Disease School of DentistryUniversity of Louisville

Protein phosphorylation on tyrosine has emerged as a key device in the control of numerous cellular functions in *** this article,we review the structure and function of bacterial tyrosine kinases and *** is catalyzed by autophosphorylating adenosine triphosphate-dependent enzymes（bacterial tyrosine（BY） kinases） that are characterized by the presence of Walker *** reverse reaction is catalyzed by three classes of enzymes：the eukaryotic-like phosphatases（PTPs） and dual-specific phosphatases;the low molecular weight protein-tyrosine phosphatases（LMW-PTPs）;and the polymerase-histidinol phosphatases（PHP）.Many BY kinases and tyrosine phosphatases can utilize host cell proteins as substrates,thereby contributing to bacterial *** tyrosine phosphorylation/dephosphorylation is also involved in biofilm formation and community *** Porphyromonas gingivalis tyrosine phosphatase Ltp1 is involved in a restraint pathway that regulates heterotypic community development with Streptococcus ***1 is upregulated by contact with *** and Ltp1 activity controls adhesin expression and levels of the interspecies signal AI-2.

关键词： oral biofilm Porphyromonas gingivalis Streptococcus tyrosine phosphorylation virulence

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Quantifying golf course nitrogen use efficiency

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Grassland Research 2022年第3期1卷 174-186页

作者： Michael A.H.Bekken douglas j.Soldat Department of Soil Science University of Wisconsin-MadisonMadisonWisconsinUSA

Background:Previous studies have surveyed golf courses to determine nitrogen(N)fertilizer application rates on golf courses,but no previous studies have attempted to quantify how efficiently golf courses use ***:This study tests the ability of the growth potential(GP)N Requirement model as a benchmarking tool to predict a target level of N use on 76 golf courses in 5 regions of the US(Midwest,Northeast,East Texas,Florida,Northwest)and 3 countries in Europe(Denmark,Norway,UK).Results:The ratio of the golf course-wide N application rate to the GP N requirement prediction(termed the nitrogen efficiency score or NES)was 0.27,indicating that golf courses used 73%less N than predicted by the *** such,the GP N Requirement model needs to be recalibrated to predict N use on golf *** was achieved by adj.sting the Nmax coefficient in the model.N rates on golf courses were widely variable both within and across *** regions had a coefficient of variation in N rates of 0.46 or ***:The high variation in N rates,which is largely unexplained by climate,economic factors,grass type,and soil type,may be indicative of inefficient N use in golf course management.

关键词： biophysical modeling decision support tools fertilizer golf growth potential nitrogen nitrogen efficiency turfgrass

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Evidence-based management of gastrointestinal diseases

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Gastroenterology Report 2015年第1期3卷 1-2页

作者： j.Thomas lamont Division of Gastroenterology Beth Israel Deaconess Medical CenterHarvard Medical SchoolDA-501330 Brookline AvenueBostonMA 02215USA

This special issue of Gastroenterology Report is directed at“Evidence-based management of gastrointestinal(GI)diseases”.Gastroenterologists are now using a range of diagnostic tests and therapies that were largely unavailable twenty years *** is a fast-moving field,with innovations being developed at a rapid *** in this issue are authoritative reviews on how to manage a wide variety of conditions that affect the GI and biliary tracts using both established and emerging technologies,with emphasis on evidence to support the best practices and to achieve the best possible outcomes for our patients;for example,much has changed as regards our diagnostic accuracy in celiac disease.

关键词： diseases gastrointestinal patients

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Parallel boron nitride nanoribbons and etch tracks formed through catalytic etching

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Nano Research 2018年第9期11卷 4874-4882页

作者： Armin Ansary Mohsen Nasseri Mathias j. Boland douglas R. Strachan Department of Physics &Astronomy University of Kentucky Lexington KY40506 USA

One-dimensional （1D） catalytic etching was investigated in few-layer hexagonal boron nitride （hBN） films. Etching of hBN was shown to share a number of similarities with that of graphitic films. As in graphitic films, etch tracks in hBN commenced at film edges and occurred predominantly along certain crystal directions of its lattice, though it was shown that the tracks were generally narrower than those of few-layer graphene under similar processing conditions. It was also shown that catalytic hydrogenation can occur completely through a few-layer hBN film, demonstrating that this process can be used in the formation of isolated low-dimensional nanoscale structures from other layered 2D materials beyond graphene. This ability for thin hBN films to be etched completely through allowed for a crystalline substrate to guide the etching process, which was demonstrated with the successful etch track formation of few-layer hBN on single-crystalline sapphire substrates. The substrate-guided etching resulted in parallel few-layer hBN nanoribbons having an average width of 32 nm and spacing of 13 nm.

关键词： hexagonal(hBN) one-dimensional catalytic etching hydrogenation etch tracks nanoribbons

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Simulated Microbe Removal around Finger Rings Using Different Hand Sanitation Methods

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International j.urnal of Oral Science 2009年第3期1卷 136-142页

作者： Archana A. Alur Madhavi j. Rane j.mes P. Scheetz douglas j. Lorenz Lawrence Gettleman Ballard High School Louisville Kentucky USA School of Medicine University of Louisville Louisville Kentucky USA School of Dentistry University of Louisville Louisville Kentucky USA School of Public Health & Information Sciences University of Louisville Louisville Kentucky USA

Aim It is our opinion that the CDC and the WHO have underestimated cross-contamination under examination gloves in dental clinics while wearing j.welry, such as finger rings. These agencies only ＂recommend＂ removing j.welry, and only washing hands for 15 seconds with soap and warm water before donning gloves. This study examined several washing procedures and finger rings using simulated microbes. Methodology A gloved robber hand manikin was made and fitted with a flesh disposable vinyl glove. Four fingers were fitted with rings or no ring, dusted with simulated microbes, and washed with a scrub brush for 5, 15, and 25 seconds under 20℃ and 40℃ water alone, or with liquid hand soap. Light levels （in lux） of fluorescent powder before and after washing were measured and delta scores calculated for changes in light levels, equivalent to effectiveness of hand washing procedures. A full-factorial, 3-factor analysis of variance （ANOVA） was used to test for differences among levels of the three study factors-time, temperature, and soap use. Tukey＇s post hoc honestly significant difference （HSD） test was applied to significant factors to examine pair-wise differences between factor levels. Results It was found that the longer the hands with rings were washed with a scrub brush under flowing water, the more simulated microbes were removed. By 25 seconds, all methods were essentially the same. Simulated microbes were more difficult to remove from the palm compared to the back of the hand. The liquid hand soap used in this study was more effective with warm water than cold. When given a choice of washing with cold water up to 15 seconds, it would be preferable not to use soap to remove simulated microbes. Qualitatively, the outer surface of finger rings were more effectively cleaned than the crevice below the ring, and the ring with a stone setting appeared to accumulate and retain simulated microbes more than other rings. Conclusion The most effective treatment was washing wi

关键词： dental exam gloves finger ring j.welry crosscontamination hand hygiene microbes fluorescent powder dental health care workers

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Persistent diarrhea with petechial rash-unusual pattern of light chain amyloidosis deposition on skin and gastrointestinal biopsies:A case report

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World j.urnal of Clinical Cases 2022年第28期10卷 10252-10259页

作者： Shawna E Bilton Nikhil Shah Diana Dougherty Sarah Simpson Alex Holliday Farhad Sahebj.m douglas j.Grider Department of Basic Science Education Virginia Tech Carilion School of MedicineRoanokeVA 24016United States Department of Internal Medicine Carilion ClinicRoanokeVA 24016United States Gastroenterology and Hepatology Section Department of Internal MedicineCarilion ClinicRoanokeVA 24016United States Dermatology Section Department of Internal MedicineCarilion ClinicRoanokeVA 24016United States Dominion Pathology Associates RoanokeVA 24018United States

BACKGROUND Amyloidosis is a rare disease characterized by extracellular deposition of misfolded protein aggregated into insoluble *** involvement in systemic amyloidosis is common,but is often subclinical or presents as vague and nonspecific *** is rare for gastrointestinal symptoms to be the main presenting symptom in patients with systemic amyloidosis,causing it to be undiagnosed until late-stage *** SUMMARY A 53 year-old man with diarrhea,hematochezia,and weight loss presented to a community *** with biopsy at that time was suspicious for Crohn *** to worsening symptoms including nausea,vomiting,and a new petechial rash,an abdominal fat pad biopsy was *** biopsy showed papillary and adnexal dermal amyloid deposition,in a pattern usually seen with cutaneous ***,Cytokeratin 5/6 was negative,excluding cutaneous *** patterns of nodular amyloidosis,subcutaneous amyloid deposits and perivascular amyloid were not *** Acid-Schiff stain was negative for lipoid proteinosis,Congo red was positive for apple green birefringence on polarization and amyloid typing confirmed amyloid light chain *** endoscopic biopsies of the gastrointestinal tract showed amyloid deposition from the esophagus to the rectum,in a pattern usually seen in serum amyloid A in the setting of chronic inflammatory diseases,including severe inflammatory bowel *** marrow biopsy showed kappa-restricted plasma cell *** Described is an unusual presentation of primary systemic amyloidosis,highlighting the risk of misdiagnosis with subsequent significant organ dysfunction and high mortality.

关键词： Light chain amyloidosis Diarrhea Endoscopy Petechial rash Plasma cell dyscrasia Case report

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Interleukin-7 Receptor Signaling Network:An Integrated Systems Perspective

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Cellular & Molecular Immunology 2008年第2期5卷 79-89页

作者： Megan j. Palmer Vinay S. Mahaj.n Lily C. Traj.an Darrell j. Irvine douglas A.Lauffenburger j.anzhu Chen Department of Biological Engineering Koch Institute for Integrative Cancer Research and Department of Biology Massachusetts Institute of Technology Cambridge MA 02139 USA

Interleukin-7 （IL-7） is an essential cytokine for the development and homeostatic maintenance of T and B lymphocytes. Binding of IL-7 to its cognate receptor, the IL-7 receptor （IL-7R）, activates multiple pathways that regulate lymphocyte survival, glucose uptake, proliferation and differentiation. There has been much interest in understanding how IL-7 receptor signaling is modulated at multiple interconnected network levels. This review examines how the strength of the signal through the IL-7 receptor is modulated in T and B cells, including the use of shared receptor components, signaling crosstalk, shared interaction domains, feedback loops, integrated gene regulation, multimerization and ligand competition. We discuss how these network control mechanisms could integrate to govern the properties of IL-7R signaling in lymphocytes in health and disease. Analysis of IL-7 receptor signaling at a network level in a systematic manner will allow for a comprehensive approach to understanding the impact of multiple signaling pathways on lymphocyte biology. Cellular ＆ Molecular Immunology.

关键词： IL-7 receptor cytokine signaling network systems biology modeling

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