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Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation

Zoological Research 2021年第4期42卷 450-460页

作者： Lin Zeng He-Qun Liu Xiao-Long Tu Chang-Mian j. Xiao Gou Ali Esmailizadeh Sheng Wang Ming-Shan Wang Ming-Cheng Wang Xiao-Long Li Hadi Charati Adeniyi CAdeola Rahamon Akinyele Moshood Adedokun Olatunbosun Oladipo Sunday Charles Olaogun Oscar j.anke Mangbon Godwin F Sheila Cecily Ommeh Bernard Agwanda j.cqueline Kasiiti Lichoti j.an-Lin Han Hong-Kun Zheng Chang-Fa Wang Ya-ping Zhang Laurent A.F.Frantz Dong-Dong Wu State Key Laboratory of Genetic Resources and Evolution Kunming Institute of ZoologyChinese Academy of SciencesKunmingYunnan 650223China Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions Institute of Tropical Bioscience and BiotechnologyChinese Academy of Tropical Agricultural SciencesHaikouHainan 571101China College of Animal Science and Technology Yunnan Agricultural UniversityKunmingYunnan 650201China Department of Animal Science Faculty of AgricultureShahid Bahonar University of KermanKermanPB 76169-133Iran Kunming College of Life Science University of Chinese Academy of SciencesKunmingYunnan 650204China Sino-Africa j.int Research Center Chinese Academy of SciencesKunmingYunnan 650223China Center for Excellence in Animal Evolution and Genetics Chinese Academy of SciencesKunmingYunnan 650223China Institute of Three-River-Source National park Chinese Academy of SciencesXiningQinghai 810008China School of Biological and Chemical Sciences Queen Mary University of LondonLondon E14NSUK Department of Genetics Albert Einstein College of MedicineBronxNew YorkNY 10461USA Annoroad Gene Tech.(Beij.ng)Co. Ltd.Beijing 100176China State Key Laboratory of Genetic Resources and Evolution Yunnan Laboratory of Molecular Biology of Domestic AnimalsGermplasm Bank of Wild SpeciesKunming Institute of ZoologyChinese Academy of SciencesKunmingYunnan 650223China Department of Veterinary Medicine University of IbadanIbadan 200284Nigeria Federal College of Animal Health and production Technology Moor-PlantationIbadan 234102Nigeria Taraba State Ministry of Agriculture and Natural Resources Jalingo 660221Nigeria Division of Veterinary Office Serti 663101Nigeria Institute For Biotechnology Research j.mo Kenyatta University of Agriculture and Technology Nairobi 62000-00200Kenya Department of Zoology National Museums of KenyaNairobi 40658-00100Kenya State Department of Livestock Ministry of AgricultureLivestockFisheries and IrrigationN

Over the last several hundred years,donkeys have adapted to high-altitude conditions on the Tibetan ***,the kiang,a closely related equid species,also inhabits this *** reports have demonstrated the importance of specific genes and adaptive introgression in divergent lineages for adaptation to hypoxic conditions on the Tibetan ***,we assessed whether donkeys and kiangs adapted to the Tibetan plateau via the same or different biological pathways and whether adaptive introgression has *** assembled a de novo genome from a kiang individual and analyzed the genomes of five kiangs and 93 donkeys(including 24 from the Tibetan plateau).Our analyses suggested the existence of a strong hard selective sweep at the EpAS1 locus in *** Tibetan donkeys,however,another gene,i.e.,EGLN1,was likely involved in their adaptation to high *** addition,admixture analysis found no evidence for interspecific gene flow between kiangs and Tibetan *** findings indicate that despite the short evolutionary time scale since the arrival of donkeys on the Tibetan plateau,as well as the existence of a closely related species already adapted to hypoxia,Tibetan donkeys did not acquire adaptation via admixture but instead evolved adaptations via a different biological pathway.

关键词： Kiang Donkey High altitude Adaptation Selection

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Small p values may not yield robust findings:an example using REST-meta-pD

引用

Science Bulletin 2021年第21期66卷 2148-2152,M0003页

作者： Xi-Ze j.a Na Zhao Hao-Ming Dong j.a-Wei Sun Marek Barton Roxana Burciu Nicolas Carrière Antonio Cerasa Bo-Yu Chen j.n Chen Stephen Coombes Luc Defebvre Christine Delmaire Kathy Duj.rdin Fabrizio Esposito Guo-Guang Fan Federica Di Nardo Yi-Xuan Feng Brett W.Fling Saurabh Garg Moran Gilat Martin Gorges Shu-Leong Ho Fay BHorak Xiao Hu Xiao-Fei Hu Biao Huang pei-Yu Huang Ze-j.an j.a Christina j.nes j.n Kassubek Lenka Kraj.ovicova Aj.y Kurani j.ng Li Qing Li Ai-ping Liu Bo Liu Hu Liu Wei-Guo Liu Renaud Lopes Yu-Ting Lou Wei Luo Tara Madhyastha Ni-Ni Mao Grainne McAlonan Martin j.McKeown Shirley pang Andrea Quattrone Irena Rektorova Alessia Sarica Hui-Fang Shang j.mes M.Shine priyank Shukla Tomas Slavicek Xiao-peng Song Gioacchino Tedeschi Alessandro Tessitore David Vaillancourt j.an Wang j.e Wang Z.j.ne Wang Lu-Qing Wei Xia Wu Xiao-j.n Xu Lei Yan j.ng Yang Wan-Qun Yang Nai-Lin Yao De-Long Zhang j.u-Quan Zhang Min-Ming Zhang Yan-Ling Zhang Cai-Hong Zhou Chao-Gan Yan Xi-Nian Zuo Mark Hallett Tao Wu Yu-Feng Zang Center for Cognition and Brain Disorders the Affiliated HospitalHangzhou Normal UniversityHangzhou 310015China Zhej.ang Key Laboratory for Research in Assessment of Cognitive Impairments Hangzhou 311121China National Basic Science Data Center Beijing 100190China State Key Laboratory of Cognitive Neuroscience and Learning&McGovern Institute for Brain Research Beijing Normal UniversityBeijing 100875China School of Information and Electronics Technology Jiamusi UniversityJiamusi 154007China Neuroscience program Central European Institute of TechnologyCEITECMasaryk UniversityBrno 62500Czech Republic Department of Applied physiology and Kinesiology University of FloridaGainesville FL 32611USA Univ.Lille InsermCHU LilleU1172-LilNCog-Lille Neuroscience&CognitionLille F-59000France The Institute for Biomedical Research and Innovation National Research CouncilMangone CS 87050Italy Department of Radiology The First Affiliated Hospital of China Medical UniversityShenyang 110001China Department of Radiology Guangdong Provincial Hospital of Chinese MedicineGuangzhou 510120China Department of Medicine Surgery and DentistryScuola Medica SalernitanaUniversity of SalernoFiscianoSA 132-84084Italy Department of Advanced Medical and Surgery Sciences University of Campania“Luigi Vanvitelli”Caserta 81100Italy Eye Center of the 2nd Affiliated Hospital Medical College of Zhejiang UniversityHangzhou 310020China Zhej.ang provincial Key Lab of Ophthalmology Hangzhou 310020China Department of Health and Exercise Science Colorado State UniversityFort Collins CO 80523USA pacific parkinson’s Research Centre University of British ColumbiaVancouver BC V6E 2M6Canada Department of Medicine(Neurology)University of British Columbia Vancouver BC V6T 1B7Canada Brain and Mind Center The University of SydneySydney NSW 2006Australia Department of Neurology Ulm UniversityUlm 89081Germany Division of Neurology Department of MedicineQueen Mary HospitalUniversity of Hong KongHong Kong 999077China Department of

Thousands of resting state functional magnetic resonance imaging(RS-f MRI)articles have been published on brain *** precise localization of abnormal brain activity,a voxel-level comparison is *** of the large number of voxels in the brain,multiple comparison correction(MCC)must be performed to reduce false positive rates,and a smaller p value(usually including either liberal or stringent MCC)is widely recommended[1].

关键词：帕金森病 precise correction

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