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Single-cell network analysis reveals gene expression programs for Arabidopsis root development and metabolism

Plant Communications 2024年第8期5卷 32-49页

作者： Ershang Han Zhenxing geng Yue Qin Yuewei Wang Shisong Ma MOE Key Laboratory for Cellular Dynamics School of Life SciencesDivision of Life Sciences and MedicineUniversity of Science and Technology of ChinaInnovation Academy for Seed DesignChinese Academy of SciencesHefei 230027China School of Data Science University of Science and Technology of ChinaHefei 230027China

Single-cell RNA-sequencing datasets of Arabidopsis roots have been generated,but related comprehensive gene co-expression network analyses are *** conducted a single-cell gene co-expression network analysis with publicly available scRNA-seq datasets of Arabidopsis roots using a SingleCellGGM *** analysis identified 149 gene co-expression modules,which we considered to be gene expression programs(GEPs).By examining their spatiotemporal expression,we identified GEPs specifically expressed in major root cell types along their developmental *** GEPs define gene programs regulating root cell development at different stages and are enriched with relevant developmental *** examples,a GEP specific for the quiescent center(QC)contains 20 genes regulating QC and stem cell niche homeostasis,and four GEPs are expressed in sieve elements(SEs)from early to late developmental stages,with the early-stage GEP containing 17 known SE developmental *** also identified GEPs for metabolic pathways with cell-type-specific expression,suggesting the existence of cell-type-specific metabolism in *** the GEPs,we discovered and verified a columellaspecific gene,NRL27,as a regulator of the auxin-related root gravitropism *** analysis thus systematically reveals GEPs that regulate Arabidopsis root development and metabolism and provides ample resources for root biology studies.

关键词： single-cell RNA sequencing single-cell gene co-expression network analysis gene expression program Arabidopsis root development NRL27 gravitropism

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Understanding Urban Vitality from the Economic and Human Activities Perspective:A Case Study of Chongqing,China

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Chinese Geographical Science 2024年第1期34卷 52-66页

作者： YANG Fiona Fan LIN geng LEI Yubing WANG Ying YI Zheng School of Geography and Planning Sun Yat-sen UniversityGuangzhou510006China Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai) Zhuhai519100China Chongqing Planning and Design Institute Chongqing401147China

The literature on urban vitality tends to focus on the built *** paper argues that some important processes in shaping vitality may be overlooked without examining the intensity and diversity of economic and human *** newly developed spatial big data and adopting the methods of multi-indicator measurement and spatial analysis methods,we analyzed the pattern of urban vitality in Chongqing,a provincial city in western China and,on this basis,evaluated the creation and maintenance of urban vitality from the economic and human activities *** findings indicate that the impacts of economic and human activities are positive and *** the three intensity and diversity indicators,economic intensity and population density show an effect on urban vitality stronger than that of economic ***,economic diversity has the strongest superposition or interactive effect,and is thus an important foundation *** positive effect of population density on urban vitality is largely a result of Chongqing’s jobs-housing *** case of Chongqing highlights the importance of topographic features,historical inheritance,large-scale migration,and cultural activities in shaping the distinctive vitality pattern of a *** study contends that the creation and maintenance of urban vitality can not be fully explained without incorporating the impacts of economic and human *** contributes to a comprehensive measurement of urban vitality and enriches its connotations.

关键词： urban vitality economic diversity economic intensity population density Chongqing,China

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Stress relaxation properties of calcium silicate hydrate:a molecular dynamics study

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Journal of Zhejiang University-Science A(Applied Physics & Engineering) 2024年第2期25卷 97-115页

作者： Zhicheng geng Shengwen TANG Yang WANG Hubao A Zhen HE Kai WU Lei WANG State Key Laboratory of Water Resources Engineering and Management Wuhan UniversityWuhan430072China Key Laboratory of Advanced Civil Engineering Materials of Ministry of Education School of Materials Science and EngineeringTongji UniversityShanghai200092China College of Materials Science and Engineering Xi’an University of Architecture and TechnologyXi’an710055China

The time-dependent viscoelastic response of cement-based materials to applied deformation is far from fully understood at the atomic *** silicate hydrate(C-S-H),the main hydration product of Portland cement,is responsible for the viscoelastic mechanism of cement-based *** this study,a molecular model of C-S-H was developed to explain the stress relaxation characteristics of C-S-H at different initial deformation states,Ca/Si ratios,temperatures,and water contents,which cannot be accessed *** stress relaxation of C-S-H occurs regardless of whether it is subjected to initial shear,tensile,or compressive deformation,and shows a heterogeneous *** plays a crucial role in the stress relaxation process.A large Ca/Si ratio and high temperature reduce the cohesion between the calcium-silicate layer and the interlayer region,and the viscosity of the interlayer region,thereby accelerating the stress relaxation of *** effect of the hydrogen bond network and the morphology of C-S-H on the evolution of the stress relaxation characteristics of C-S-H at different water contents was elucidated by nonaffine mean squared *** results shed light on the stress relaxation characteristics of C-S-H from a microscopic perspective,bridging the gap between the microscopic phenomena and the underlying atomic-level mechanisms.

关键词： Calcium silicate hydrate(C-S-H) Stress relaxation Ca/Si ratio Temperature Water content Atomic simulation

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Design and modification of metal sulfide-based catalysts for lithiumsulfur batteries

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Particuology 2024年第3期86卷 86-100页

作者： Yufei Zhao Chuannan geng Li Wang Haotian Yang Wei Lv Quan-Hong Yang Nanoyang Group State Key Laboratory of Chemical EngineeringSchool of Chemical Engineering and TechnologyNational Industry-Education Integration Platform of Energy Storageand Collaborative Innovation Center of Chemical Science and Engineering(Tianjin)Tianjin UniversityTianjin300072China Shenzhen Geim Graphene Center Engineering Laboratory for Functionalized Carbon MaterialsTsinghua Shenzhen International Graduate SchoolTsinghua UniversityShenzhen518055China Haihe Laboratory of Sustainable Chemical Transformations Tianjin300192China Joint School of National University of Singapore and Tianjin University International Campus of Tianjin UniversityFuzhou350207China

Metal sulfide(MS)have good conductivity,strong adsorption ability,and excellent catalytic activity for the conversion of sulfur species,and thus,show great promise as the catalysts in LieS ***,the relationship between their properties and electrochemical performance is still ***,further in-depth discussions are required to improve their design in Li-S *** review systematically summarizes the basic structural and electrochemical properties of MSs and highlights the advantages that guarantee them as high-performance catalysts in Li-S ***,various modification strategies for MSs to enhance the catalytic activity,efficiency,and stability are also *** last,future opportunities for MS catalysts in Li-S batteries are proposed.

关键词： Lithium-sulfur battery Metal sulfide Catalysis

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Numerical and experimental study on the falling film flow characteristics with the effect of co-current gas flow in hydrogen liquefaction process

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Petroleum Science 2024年第2期21卷 1369-1384页

作者： Chong-Zheng Sun Yu-Xing Li Hui Han Xiao-Yi geng Xiao Lu College of Energy Storage Technology Shandong University of Science and TechnologyQingdao 266590ShandongChina College of Pipeline and Civil Engineering/Shandong Provincial Key Laboratory of Oil&Gas Storage and Transportation Safety China University of PetroleumQingdao 266580ShandongChina

Liquid hydrogen storage and transportation is an effective method for large-scale transportation and utilization of hydrogen energy. Revealing the flow mechanism of cryogenic working fluid is the key to optimize heat exchanger structure and hydrogen liquefaction process(LH2). The methods of cryogenic visualization experiment, theoretical analysis and numerical simulation are conducted to study the falling film flow characteristics with the effect of co-current gas flow in LH2spiral wound heat *** results show that the flow rate of mixed refrigerant has a great influence on liquid film spreading process, falling film flow pattern and heat transfer performance. The liquid film of LH2mixed refrigerant with column flow pattern can not uniformly and completely cover the tube wall surface. As liquid flow rate increases, the falling film flow pattern evolves into sheet-column flow and sheet flow, and liquid film completely covers the surface of tube wall. With the increase of shear effect of gas-phase mixed refrigerant in the same direction, the liquid film gradually becomes unstable, and the flow pattern eventually evolves into a mist flow.

关键词： Hydrogen liquefaction Spiral wound heat exchanger Flow pattern transition Falling film flow

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Planar Graphs whose Second Largest Eigenvalue Smaller than ■

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Journal of Mathematical Research with Applications 2024年第1期44卷 1-6页

作者： Zihao geng Jiming GUO Department of Mathematics East China University of Science and Technology

A graph G is said to be planar if G can be drawn on the plane in such a way that its edges intersect only at their *** this paper,all the planar graphs without isolated vertices whose second largest eigenvalue smaller... 详细信息

关键词： planar graph the second largest eigenvalue complete product

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AHLNet:Adaptive Multihead Structure and Lightweight Feature Pyramid Network for Detection of Live Working in Substations

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Machine Intelligence Research 2024年第5期21卷 983-992页

作者： Mengle Peng Xiaoyong Jiang Langyue Huang Zhongyi Li Haiteng Wu Xiaotang geng Zhejiang University of Science and Technology Hangzhou310023China Zhejiang Key Laboratory of Intelligent Operation and Maintenance Robot Hangzhou311100China

With the increasing demand for power in society,there is much live equipment in substations,and the safety and standardization of live working of workers are facing *** at these problems of scene complexity and object diversity in the real-time detection of the live working safety of substation workers,an adaptive multihead structure and lightweight feature pyramid-based network(AHLNet)is proposed in this study,which is based on ***,we take AH-Darknet53 as the backbone network of YOLOV3,which can introduce an adaptive multihead(AMH)structure,reduce the number of network parameters,and improve the feature extraction ability of the backbone ***,to reduce the number of convolution layers of the deeper feature map,a lightweight feature pyramid network(LFPN)is proposed,which can perform feature fusion in advance to alleviate the problem of feature imbalance and gradient ***,the proposed AHLNet is evaluated on the datasets of 16 categories of substation safety operation scenarios,and the average prediction accuracy MAP_(50)reaches 82.10%.Compared with YOLOV3,MAP_(50)is increased by 2.43%,and the number of parameters is 90 M,which is only 38%of the number of parameters of *** addition,the detection speed is basically the same as that of YOLOV3,which can meet the real-time and accurate detection requirements for the safe operation of substation staff.

关键词： Adaptive multihead structure lightweight feature pyramid substation feature imbalance multiobject detection

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Dynamic Organization of Large-scale Functional Brain Networks Supports Interactions Between Emotion and Executive Control

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Neuroscience Bulletin 2024年第7期40卷 981-991页

作者： Haiyang geng Pengfei Xu Andre Aleman Shaozheng Qin Yue-Jia Luo State Key Laboratory of Cognitive Neuroscience and Learning Beijing Normal UniversityBeijing 100875China Tianqiao and Chrissy Chen Institute for Translational ResearchShanghai 200040China Beijing Key Laboratory of Applied Experimental Psychology National Demonstration Center for Experimental Psychology Education(BNU)Faculty of PsychologyBeijing Normal UniversityBeijing 100875China Center for Neuroimaging Shenzhen Institute of NeuroscienceShenzhen 518107China University of Groningen Department of Biomedical Sciences of Cells and SystemsSection Cognitive NeuroscienceUniversity Medical Center GroningenGroningenThe Netherlands Institute for Neuropsychological Rehabilitation University of Health and Rehabilitation SciencesQingdao 266113China Shenzhen Key Laboratory of Affective and Social Neuroscience Magnetic Resonance ImagingCenter for Brain Disorders and Cognitive SciencesShenzhen UniversityShenzhen 518060China Chinese Institute for Brain Research Beijing 102206China

Emotion and executive control are often conceptualized as two distinct modes of human brain ***,however,is known about how the dynamic organization of large-scale functional brain networks that support flexible emotion processing and executive control,especially their *** amygdala and prefrontal systems have long been thought to play crucial roles in these *** advances in human neuroimaging studies have begun to delineate functional organization principles among the large-scale brain networks underlying emotion,executive control,and their ***,we propose a dynamic brain network model to account for interactive competition between emotion and executive control by reviewing recent resting-state and task-related neuroimaging studies using network-based *** this model,dynamic interactions among the executive control network,the salience network,the default mode network,and sensorimotor networks enable dynamic processes of emotion and support flexible executive control of multiple processes;neural oscillations across multiple frequency bands and the locus coeruleus−norepinephrine pathway serve as communicational mechanisms underlying dynamic synergy among large-scale functional brain *** model has important implications for understanding how the dynamic organization of complex brain systems and networks empowers flexible cognitive and affective functions.

关键词： Dynamic brain network Emotion Executive control Salience network Executive control network Default mode network

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Investigation on cavitating turbulent flow for the twisted NACA66 hydrofoil using a PANS model with helicity modification

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Journal of Hydrodynamics 2024年第2期36卷 219-231页

作者： Chen geng Zhao-hui Qian Ke-xin Zheng Wei-xiang Ye Xian-wu Luo State Key Laboratory of Hydroscience cand Engineering Deparment of Energy and Power EngineeringTsinghua UniversityBeijing 100084China Institute of Nuclear and New Energy Technology Tsinghua UniversityBeijing 100084China

In the present paper,the unsteady cavitating turbulent flow over the twisted NACA66 hydrofoil is investigated based on an modified shear stress transfer k-ωpartially averaged Navier-Stokes(MSST PANS)model,i.e.,new MSST PANS(NMSST PANS)model,where the production term of kinetic energy in the turbulence model is modified with *** with the experimental data,cavitation evolution and its characteristic frequency are satisfactorily predicted by the proposed NMSST PANS *** is revealed that the interaction among the main flow,the reentrant jets,and sheet cavitation causes the formation of the primary shedding cavity near the mid-span and the secondary shedding cavity at each side of the twisted hydrofoil,and further induces the remarkable pressure gradient around shedding *** with the development of the primary and the secondary shedding cavities,the great pressure gradient associated with large cavity volume variation promotes the vortical flow generation and the spatial deformation of vortex structure during cavitation evolution,and results in the primary and the secondary U-type ***,dynamic mode decomposition(DMD)analysis is utilized to confirm the interaction among the main flow,the main reentrant jet and two side reentrant jets,and *** results indicate that the proposed NMSST PANS model is suitable to simulate the complicated cavitating turbulent flow for various engineering applications.

关键词： Cavitating turbulent flow partially averaged Navier-Stokes(PANS)model hydrofoil numerical simulation

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Deployment optimization for target perpetual coverage in energy harvesting wireless sensor network

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Digital Communications and Networks 2024年第2期10卷 498-508页

作者： Zhenkun Jin Yixuan geng Chenlu Zhu Yunzhi Xia Xianjun Deng Lingzhi Yi Xianlan Wang Wuhan Business University 430056China Wuhan Research Institute of Post and Telecommunication Wuhan430074China Hubei Key Laboratory of Distributed System Security Hubei Engineering Research Center on Big Data SecuritySchool of Cyber Science and EngineeringHuazhong University of Science and TechnologyWuhan430074China Hubei Chutian Expressway Digital Technology Co.Ltd Wuhan430074China School of Information and Safety Engineering Zhongnan University of Economics and LawWuhan430073China

Energy limitation of traditional Wireless Sensor Networks(WSNs)greatly confines the network lifetime due to generating and processing massive sensing data with a limited *** energy harvesting WSN is a novel network architecture to address the limitation of traditional ***,existing coverage and deployment schemes neglect the environmental correlation of sensor nodes and external energy with respect to physical *** considering the spatial correlation of the environment and the uneven distribution of energy in energy harvesting WSN,we investigate how to deploy a collection of sensor nodes to save the deployment cost while ensuring the target perpetual *** Confident Information Coverage(CIC)model is adopted to formulate the CIC Minimum Deployment Cost Target Perpetual Coverage(CICMTP)problem to minimize the deployed sensor *** the CICMTP is NP-hard,we devise two approximation algorithms named Local Greedy Threshold Algorithm based on CIC(LGTA-CIC)and Overall Greedy Search Algorithm based on CIC(OGSA-CIC).The LGTA-CIC has a low time complexity and the OGSA-CIC has a better approximation *** simulation results demonstrate that the OGSA-CIC is able to achieve lower deployment cost and the performance of the proposed algorithms outperforms GRNP,TPNP and EENP algorithms.

关键词： Energy harvesting WSN Deployment optimization Confident information coverage(CIC) Target perpetual coverage

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