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Gene capture by transposable elements leads to epigenetic conflict in maize

Molecular Plant 2021年第2期14卷 237-252页

作者： Aline Muyle danelle seymour Nikos Darzentas Elias Primetis Brandon S.Gaut Alexandros Bousios Department of Ecology and Evolutionary Biology UC IrvineIrvineCA 92697USA Department of Botany and Plant Sciences UC RiversideRiversideCA 92521USA Central European Institute of Technology Masaryk UniversityBrnoCzech Republic School of Life Sciences University of SussexBrightonUK

Transposable elements(TEs)regularly capture fragments of *** the host silences these TEs,siRNAs homologous to the captured regions may also target the *** epigenetic crosstalk establishes an intragenomic conflict:silencing the TEs has the cost of silencing the *** genes are important,however,natural selection may maintain function by moderating the silencing response,which may also advantage the *** this study,we examined this model by focusing on Helitrons,Pack-MULEs,and Sirevirus LTR retrotransposons in the maize *** documented 1263 TEs containing exon fragments from 1629 donor *** with epigenetic conflict,donor genes mapped more siRNAs and were more methylated than genes with no evidence of ***,these patterns differed between syntelog versus translocated donor *** appeared to maintain function,as measured by gene expression,consistent with moderation of silencing for functionally important *** marks did not spread beyond their captured regions and 24nt crosstalk siRNAs were linked with CHH *** genes,in contrast,bore the signature of *** were highly methylated and less expressed,but also overrepresented among donor genes and located away from chromosomal arms,which suggests a link between capture and gene *** genes into potential functional categories based on evolutionary constraint supported the synteny-based *** families captured genes in different ways,but the evidence for their advantage was generally less obvious;nevertheless,TEs with captured fragments were older,mapped fewer siRNAs,and were slightly less methylated than TEs without captured ***,our results argue that TE capture triggers an intragenomic conflict that may not affect the function of important genes but may lead to the pseudogenization of less-constrained genes.

关键词： transposable elements intragenomic conflict gene capture epigenetic silencing methylation synteny

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A review of public health guidelines for postpartum physical activity and sedentary behavior from around the world

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Journal of Sport and Health Science 2024年第4期13卷 472-483,F0003页

作者： Kelly R.Evenson Wendy J.Brown Alison K.Brinson Emily Budzynski-seymour Melanie Hayman Department of Epidemiology Gillings School of Global Public HealthUniversity of North Carolina at Chapel HillChapel HillNC 27599-8050USA Faculty of Health Sciences and Medicine Bond UniversityGold CoastQLD 4226Australia School of Human Movement and Nutrition Sciences The University of QueenslandBrisbaneQLD 4072Australia Department of Anthropology University of North Carolina at Chapel HillChapel HillNC 27599-3115USA Carolina Population Center University of North Carolina at Chapel HillChapel HillNC 27599-8120USA Faculty of Sport Health and Social SciencesSolent UniversitySouthamptonSO140YNUK Appleton Institute School of HealthMedical and Applied SciencesCentral Queensland UniversityRockhamptonQLD 4701Australia

Background:The period following pregnancy is a critical time window when future habits with respect to physical activity(PA) and sedentary behavior(SB) are established;therefore,it warrants *** purpose of this scoping review was to summarize public health-oriented country-specific postpartum PA and SB guidelines ***:To identity guidelines published since 2010,we performed a(a) systematic search of 4 databases(CINAHL,Global Health,PubMed,and SPORTDiscus),(b) structured repeatable web-based search separately for 194 countries,and(c) separate web-based *** the most recent guideline was included for each ***:We identified 22 countries with public health-oriented postpartum guidelines for PA and 11 countries with SB *** continents with guidelines included Europe(n=12),Asia(n=5),Oceania(n=2),Africa(n=1),North America(n=1),and South America(n=1).The most common benefits recorded for PA included weight control/management(n=10),reducing the risk of postpartum depression or depressive symptoms(n=9),and improving mood/well-being(n=8).Postpartum guidelines specified exercises to engage in,including pelvic floor exercises(n=17);muscle strengthening,weight training,or resistance exercises(n=13);aerobics/general aerobic activity(n=13);walking(n=11);cycling(n=9);and swimming(n=9).Eleven guidelines remarked on the interaction between PA and breastfeeding;several guidelines stated that PA did not impact breast milk quantity(n=7),breast milk quality(n=6),or infant growth(n=3).For SB,suggestions included limiting long-term sitting and interrupting sitting with ***:Country-specific postpartum guidelines for PA and SB can help promote healthy behaviors using a culturally appropriate context while providing specific guidance to public health practitioners.

关键词： Breastfeeding Caesarean section Guidelines Postnatal Recommendations

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植物凝集素类受体激酶研究进展

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热带亚热带植物学报 2024年

作者：熊圭 John seymour HESLOP-HARRISON 刘青植物多样性与特色经济作物全国重点实验室广东省应用植物学重点实验室中国科学院华南植物园华南国家植物园中国科学院大学莱斯特大学遗传学和基因组生物学系

植物凝集素类受体激酶(lectin receptor-like kinases， LecRLKs)，隶属于植物膜蛋白类受体激酶，LecRLKs主要由胞外凝集素结构域、跨膜结构域和胞内激酶结构域组成，根据胞外结构域的特异性，分为G型、L型和C型，凝集素类受体激酶参与... 详细信息

植物凝集素类受体激酶(lectin receptor-like kinases， LecRLKs)，隶属于植物膜蛋白类受体激酶，LecRLKs主要由胞外凝集素结构域、跨膜结构域和胞内激酶结构域组成，根据胞外结构域的特异性，分为G型、L型和C型，凝集素类受体激酶参与植物的生长发育和环境响应调控。该文总结凝集素类受体激酶的研究历史、结构和分类，阐述植物LecRLKs的发育调控和胁迫响应功能，对功能明确的LecRLKs基因进行归类。提出凝集素类受体激酶研究中存在的不足之处，包括该家族演化历史研究极其缺乏、信号传导途径及其潜在配体亟待开展等方面。在此基础上，提出未来深入研究的方向，以期为植物凝集素类受体激酶基因家族的定向育种提供理论支持。

关键词：凝集素类受体蛋白激酶生长发育生物/非生物胁迫免疫

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Ocean waves propagating over a porous seabed: Residual and oscillatory mechanisms

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Science China(Technological Sciences) 2007年第1期50卷 81-89页

作者： seymour Brian Department of Mathematics The University of British ColumbiaVancouverV6Z 1Z2Canada

Two mechanisms for the wave-induced pore pressures in a porous seabed, i.e. oscillatory and residual excess pore pressures, have been observed in laboratory experiments and field measurements. Most previous investigations have focused on one of the mechanisms individually. In this paper, an analytical solution for the wave-induced residual pore pressure, which is not available yet, is derived, and compared with the existing experimental data. With the new solution, a parametric analysis is performed to clarify the applicable ranges of two mechanisms. Then, a simplified approximation for the prediction of wave-induced liquefaction potential is proposed for engineering practice.

关键词： seabed pore pressure residual oscillatory wave loading

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Finite groups whose element orders do not exceed twenty

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Progress in Natural Science:Materials International 2000年第1期10卷 13-23页

作者： seymour LIPSCHUTZ,施武杰 Department of Mathematics Temple University Philadelphia PA 19122 USA Institute of Mathematics Southwest Normal University Chongqing 400715 China

Let h(γ) denote the number of distinct finite groups G such that πe(G) = γ. Hereγ is a set of positive integers, and πe ( G) is the set of element orders of G. It is proved that h(γ)℃{0, 1,2, ∞} for γ(?){1, 2... 详细信息

关键词： finite group element orders classification theorem.

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Tomato Flavor： Lost and Found？

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Molecular Plant 2017年第6期10卷 782-784页

作者： Duoduo Wang Graham B. seymour University of Nottingham School of Biosciences Division of Plant and Crop Science Sutton Bonington Lough Leics LE12 5RD UK

Tomato is the highest value fruit crop in the world （Tieman et al., 2017） and a major component of healthy diets as it provides ready sources of vitamins A, C, E, and K, minerals including K and Fe, and lycopene as an antioxidant. However, modern varieties are often described as having little flavor, especially in comparison with traditional or heirloom types.

关键词： Tomato Flavor Lost and Found volatile compounds

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Molecular and biochemical basis of softening in tomato

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Molecular Horticulture 2022年第1期2卷 63-72页

作者： Duoduo Wang Graham B.seymour College of Chemistry and Life Sciences Zhejiang Normal UniversityJinhuaZhejiang 321004China School of Life Sciences Jiangsu UniversityZhenjiang 212013China Divison of Plant and Crop Sciences University of NottinghamSutton BoningtonLoughboroughLeics LE125RDUK

We review the latest information related to the control of fruit softening in tomato and where relevant compare the events with texture changes in other fleshy *** of an acceptable texture is essential for consumer acceptance,but also determines the postharvest life of *** complex modern supply chain demands effective control of shelf life in tomato without compromising colour and *** control of softening and ripening in tomato(Solanum lycopersicum)are discussed with respect to hormonal cues,epigenetic regulation and transcriptional modulation of cell wall structure-related *** the last section we focus on the biochemical changes closely linked with softening in tomato including key aspects of cell wall *** important elements of the softening process have been identified,but our understanding of the mechanistic basis of the process in tomato and other fruits remains incomplete,especially the precise relationship between changes in cell wall structure and alterations in fruit texture.

关键词： Tomato Cell walls Softening Pectin Ripening

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Promises and pitfalls of targeted agents in chronic lymphocytic leukemia

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Cancer Drug Resistance 2020年第3期3卷 415-444页

作者： Thomas E.Lew Mary Ann Anderson John F.seymour Department of Clinical Haematology The Royal Melbourne Hospital and Peter MacCallum Cancer CentreParkville 3050Australia. Blood Cells and Blood Cancer Division Walter and Eliza Hall Institute of Medical ResearchParkville 3050Australia. Faculty of Medicine Dentistry and Health SciencesThe University of MelbourneParkville 3050Australia.

Targeted agents have significantly improved outcomes for patients with chronic lymphocytic leukemia,particularly high-risk subgroups for whom chemoimmunotherapy previously offered limited *** classes of agent in particular,the Bruton tyrosine kinase inhibitors(e.g.,ibrutinib)and the B-cell lymphoma 2 inhibitor,venetoclax,induce high response rates and durable remissions in the relapsed/refractory and frontline ***,maturing clinical data have revealed promises and pitfalls for both *** drugs induce remissions and disease control in the majority of patients,often in situations where modest efficacy would be expected with traditional chemoimmunotherapy ***,in the relapsed and refractory setting,both agents appear to be associated with an inevitable risk of disease relapse and *** patterns of resistance are being described for both agents but a common theme appears to be multiple sub-clonal drivers of disease *** these mechanisms and developing effective and safe methods to circumvent the emergence of resistance will determine the longer-term utility of these agents to improve patients’quality and length of *** drug combinations,optimised scheduling and sequencing of therapy will likely hold the key to achieving these important goals.

关键词： Chronic lymphocytic leukemia drug resistance venetoclax B-cell lymphoma 2 ibrutinib bruton tyrosine kinase idelalisib phosphatidylinositol 3-kinase

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Impact of tumour histological subtype on chemotherapy outcome in advanced oesophageal cancer

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World Journal of Gastrointestinal Oncology 2017年第8期9卷 333-340页

作者： Michael Davidson Ian Chau David Cunningham Komel Khabra Timothy Iveson Tamas Hickish Matthew seymour Naureen Starling Royal Marsden Hospital NHS Foundation Trust London and Surrey Southampton University Hospital NHS Trust and Salisbury Hospital NHS Foundation Trust Department of Haematology and Oncology Bournemouth University and Poole Hospital NHS Trust St James’s Institute of Oncology St James’s Hospital

To investigate the impact of histology on outcome in advanced oesophageal cancer treated with first-line fluoropyrimidine-based chemotherapy. METHODSIndividual patient data were pooled from three randomised phase III trials of fluoropyrimidine-based chemotherapy ± platinum/anthracycline in patients with advanced, untreated gastroesophageal adenocarcinoma or squamous cell carcinoma (SCC) randomised between 1994 and 2005. The primary endpoint was overall survival of oesophageal cancer patients according to histology. Secondary endpoints were response rates and a toxicity composite endpoint. RESULTSOf the total 1836 randomised patients, 973 patients (53%) were eligible (707 patients with gastric cancer were excluded), 841 (86%) had adenocarcinoma and 132 (14%) had SCC. There was no significant difference in survival between patients with adenocarcinoma and SCC, with median overall survivals of 9.5 mo vs 7.6 mo (HR = 0.85, 95%CI: 0.70-1.03, P = 0.09) and one-year survivals of 38.8% vs 28.2% respectively. The overall response rate to chemotherapy was 44% for adenocarcinoma vs 33% for SCC (P = 0.01). There was no difference in the frequency of the toxicity composite endpoint between the two groups. CONCLUSIONThere was no significant difference in survival between adenocarcinoma and SCC in patients with advanced oesophageal cancer treated with fluoropyrimidine-based chemotherapy despite a trend for worse survival and less chemo-sensitivity in SCC. Tolerance to treatment was similar in both groups. This analysis highlights the unmet need for SCC-specific studies in advanced oesophageal cancer and will aid in the design of future trials of targeted agents.

关键词： Oesophageal cancer Adenocarcinoma Chemotherapy Squamous Pooled analysis

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Taxonomic and metabolic shifts in the Coorong bacterial metagenome driven by salinity and external inputs

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Journal of Oceanology and Limnology 2018年第6期36卷 2033-2049页

作者： Kelly NEWTON Thomas C.JEFFRIES Renee J.SMITH Justin R.seymour Laurent SEURONT James G.MITCHELL School of Biological Sciences Flinders University School of Science and Health Western Sydney University Flinders Centre for Innovation in Cancer Flinders University Climate Change Cluster University of Technology Sydney Centre National de la Recherche Scientifi que Laboratoire d'Océanologie et de Géosciences

The Coorong estuary lies at the terminus of Australia's largest river system, the Murray-Darling; both are strongly influenced by human activities; including farming and extensive flow modification. Metagenomic approaches were used to determine the planktonic bacterial community composition and potential metabolic function at two extremes in the Coorong, the river mouth which exhibits marine-like salinity, and the hypersaline upper-reaches of the estuary. Significant shifts in taxa and metabolic function were seen between the two sites. The river mouth exhibited an increase in abundance of R hodobacteriaceae and Alteromonadaceae; families readily able to adapt to change in nutrient conditions; and the potentially pathogenic families B rucellaceae, Enterobacteriaceae and Vibrionaceae. Metabolisms over-represented include motility and chemotaxis, RNA metabolism and membrane transport, all of which are involved in actively searching for and obtaining nutrients. Also over-represented were metabolisms involved in population succession and stress response. An over-representation of taxa and metabolisms indicative of environmental change is reflective of anthropogenically af fected riverine input. In the hypersaline upper reaches of the estuary, the halophilic family Ectothiorhodospiraceae was over-represented, as were the families Flavobacteriaceae, Cytophagaceae and Nocardioidaceae, members of which are able to survive over a wide salinity range. Metabolisms over-represented here were reflective of increased bacterial growth, characteristic of hypersaline environments, and included DNA metabolism, nucleotide and nucleoside synthesis and cell cycle. Coorong metagenomes clustered taxonomically and metabolically with other planktonic metagenomes, but remained an outlier of this group with only 71% and 84% similarity, respectively. This indicates that the Coorong exhibits a unique planktonic bacterial community that is influenced by riverine input at the river mouth and sali

关键词： hypersaline estuary bacteria taxonomy metabolic potential

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